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jpayne@68
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1 from array import array
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jpayne@68
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2 from typing import Iterable, Optional, Tuple, Union
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3
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4 def get_encoding_error_handler() -> str: ...
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jpayne@68
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5 def set_encoding_error_handler(name: str) -> str: ...
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6 def _pysam_dispatch(
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7 collection: str,
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8 method: str,
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9 args: Optional[Iterable[str]],
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10 catch_stdout: bool = ...,
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11 is_usage: bool = ...,
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12 save_stdout: Optional[str] = ...,
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13 ) -> Tuple[int, Union[bytes, str], Union[bytes, str]]: ...
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14 def parse_region(
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15 contig: Optional[str] = ...,
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16 start: Optional[int] = ...,
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17 stop: Optional[int] = ...,
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18 region: Optional[str] = ...,
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19 reference: Optional[str] = ...,
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20 end: Optional[int] = ...,
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21 ) -> Tuple[str, int, int]: ...
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22 def qualitystring_to_array(
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23 input_str: Optional[str], offset: int = ...
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24 ) -> Optional[array]: ...
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25 def array_to_qualitystring(qualities: array, offset: int = ...) -> Optional[str]: ...
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26 def qualities_to_qualitystring(
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27 qualities: Union[array, Iterable[str]], offset: int = ...
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28 ) -> Optional[str]: ...
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