Mercurial > repos > rliterman > csp2

comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/bbmap-39.01-1/current/sketch/AlignmentJob.java @ 68:5028fdace37b

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planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author jpayne
date Tue, 18 Mar 2025 16:23:26 -0400
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67:0e9998148a16 68:5028fdace37b
1 package sketch;
2
3 import java.util.concurrent.ArrayBlockingQueue;
4
5 public class AlignmentJob {
6
7 AlignmentJob(Comparison c_, ArrayBlockingQueue<Comparison> dest_){
8 c=c_;
9 dest=dest_;
10 }
11
12 void doWork(){
13 assert(!isPoison());
14 try {
15 c.ssuIdentity();
16 }catch (Throwable t){
17 t.printStackTrace();
18 }
19 put();
20 }
21
22 private void put(){
23 boolean success=false;
24 while(!success){
25 try {
26 dest.put(c);
27 success=true;
28 } catch (InterruptedException e) {
29 // TODO Auto-generated catch block
30 e.printStackTrace();
31 }
32 }
33 }
34
35 final boolean isPoison(){return c==null;}
36
37 final Comparison c;
38 final ArrayBlockingQueue<Comparison> dest;
39
40 }