Mercurial > repos > rliterman > csp2

comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/bbmap-39.01-1/pytools/ReadMe @ 68:5028fdace37b

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planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author jpayne
date Tue, 18 Mar 2025 16:23:26 -0400
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67:0e9998148a16 68:5028fdace37b
1 The readqc standalone pipeline;
2 The filter standalone pipeline;
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4 ex data:
5 12248.8.247376.CAGAGTG-ACACTCT.fastq.gz
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7 ex run syntax:
8 % time filter.py -o OUTDIR -f FASTQ.gz --prod-type RNA --skip-blast
9 % readqc.py -o OUTDIR -f FASTQ.gz --skip-blast -html
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