Mercurial > repos > rliterman > csp2
annotate CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/bbmap-39.01-1/pytools/ReadMe @ 68:5028fdace37b
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 16:23:26 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| jpayne@68 | 1 The readqc standalone pipeline; |
| jpayne@68 | 2 The filter standalone pipeline; |
| jpayne@68 | 3 |
| jpayne@68 | 4 ex data: |
| jpayne@68 | 5 12248.8.247376.CAGAGTG-ACACTCT.fastq.gz |
| jpayne@68 | 6 |
| jpayne@68 | 7 ex run syntax: |
| jpayne@68 | 8 % time filter.py -o OUTDIR -f FASTQ.gz --prod-type RNA --skip-blast |
| jpayne@68 | 9 % readqc.py -o OUTDIR -f FASTQ.gz --skip-blast -html |
| jpayne@68 | 10 |
| jpayne@68 | 11 |
| jpayne@68 | 12 |
| jpayne@68 | 13 |