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comparison CSP2/bin/userSNPDiffs.py @ 27:792274118b2e

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"planemo upload"
author rliterman
date Wed, 04 Dec 2024 12:50:59 -0500
parents 01431fa12065
children 893a6993efe3
comparison
equal deleted inserted replaced
26:6f85641ecd48 27:792274118b2e
29 header_data['SNPDiffs_File'] = snpdiffs_path 29 header_data['SNPDiffs_File'] = snpdiffs_path
30 return header_data 30 return header_data
31 31
32 parser = argparse.ArgumentParser() 32 parser = argparse.ArgumentParser()
33 parser.add_argument("--snpdiffs_file", help="Path to the SNP diffs list file") 33 parser.add_argument("--snpdiffs_file", help="Path to the SNP diffs list file")
34 parser.add_argument("--trim_name", help="Trim name") 34 parser.add_argument('--trim_name', type=str, default="", help='trim name')
35 args = parser.parse_args() 35 args = parser.parse_args()
36 36
37 snpdiffs_list_file = args.snpdiffs_file 37 snpdiffs_list_file = args.snpdiffs_file
38 trim_name = args.trim_name 38 trim_name = args.trim_name
39 header_rows = [] 39 header_rows = []