Mercurial > repos > rliterman > csp2

comparison CSP2/bin/screenSNPDiffs.py @ 28:893a6993efe3

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"planemo upload"
author rliterman
date Wed, 04 Dec 2024 13:48:13 -0500
parents 792274118b2e
children 93393808f415
comparison
equal deleted inserted replaced
27:792274118b2e 28:893a6993efe3
553 parser.add_argument("--min_iden", default=99,type=float, help="Minimum identity") 553 parser.add_argument("--min_iden", default=99,type=float, help="Minimum identity")
554 parser.add_argument("--ref_edge", default=150,type=int, help="Reference edge") 554 parser.add_argument("--ref_edge", default=150,type=int, help="Reference edge")
555 parser.add_argument("--query_edge", default=150,type=int, help="Query edge") 555 parser.add_argument("--query_edge", default=150,type=int, help="Query edge")
556 parser.add_argument("--density_windows",default="1000,125,15", help="Density windows (comma-separated)") 556 parser.add_argument("--density_windows",default="1000,125,15", help="Density windows (comma-separated)")
557 parser.add_argument("--max_snps", default="3,2,1",help="Maximum SNPs (comma-separated)") 557 parser.add_argument("--max_snps", default="3,2,1",help="Maximum SNPs (comma-separated)")
558 parser.add_argument('--trim_name', type=str, default="", help='trim name') 558 parser.add_argument('--trim_name', nargs='?', const="", default="", type=str, help='Trim name')
559 parser.add_argument("--output_file", help="Output file") 559 parser.add_argument("--output_file", help="Output file")
560 parser.add_argument("--ref_id", help="Reference IDs file") 560 parser.add_argument("--ref_id", help="Reference IDs file")
561 parser.add_argument("--tmp_dir",default="", help="TMP dir") 561 parser.add_argument("--tmp_dir",default="", help="TMP dir")
562 562
563 args = parser.parse_args() 563 args = parser.parse_args()