Mercurial > repos > rliterman > csp2

comparison CSP2/bin/chooseRefs.py @ 39:93393808f415

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"planemo upload"
author rliterman
date Thu, 12 Dec 2024 13:53:15 -0500
parents 893a6993efe3
children
comparison
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38:ee512a230a1e 39:93393808f415
184 possible_refs = possible_refs.loc[~possible_refs['Isolate_ID'].isin(refs_chosen)].copy() 184 possible_refs = possible_refs.loc[~possible_refs['Isolate_ID'].isin(refs_chosen)].copy()
185 185
186 non_ref_df = cluster_df.loc[~cluster_df['Isolate_ID'].isin(refs_chosen)].sort_values('Base_Score', ascending=False) 186 non_ref_df = cluster_df.loc[~cluster_df['Isolate_ID'].isin(refs_chosen)].sort_values('Base_Score', ascending=False)
187 non_ref_df['Is_Ref'] = False 187 non_ref_df['Is_Ref'] = False
188 final_ref_df['Is_Ref'] = True 188 final_ref_df['Is_Ref'] = True
189 pd.concat([final_ref_df, non_ref_df]).reset_index(drop=True).to_csv(ref_file, index=False, sep="\t") 189
190 with open(ref_file, 'w') as f:
191 pd.concat([final_ref_df, non_ref_df]).reset_index(drop=True).to_csv(f, index=False, sep="\t")
190 192
191 print(",".join(final_ref_df['Path'].tolist())) 193 print(",".join(final_ref_df['Path'].tolist()))