Mercurial > repos > rliterman > csp2

comparison CSP2/conf/profiles.config @ 36:f6cd698b6f62

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"planemo upload"
author rliterman
date Thu, 05 Dec 2024 18:09:26 -0500
parents 6f4e6377ba64
children
comparison
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35:106d28c851fa 36:f6cd698b6f62
77 params.bbtools_module = "" 77 params.bbtools_module = ""
78 params.mash_module = "" 78 params.mash_module = ""
79 params.trim_name = "" 79 params.trim_name = ""
80 } 80 }
81 81
82 csp2_galaxy1 { 82 csp2_galaxy {
83 conda.enabled = true 83 conda.enabled = true
84 conda.useMicromamba = true 84 conda.useMicromamba = true
85 conda.cacheDir = "${projectDir}/CSP2_env" 85 conda.cacheDir = "${projectDir}/CSP2_env"
86 process.conda = "${projectDir}/conf/CSP2.yaml" 86 process.conda = "${projectDir}/conf/CSP2.yaml"
87 87
97 params.bedtools_module = "" 97 params.bedtools_module = ""
98 params.bbtools_module = "" 98 params.bbtools_module = ""
99 params.mash_module = "" 99 params.mash_module = ""
100 params.trim_name = "" 100 params.trim_name = ""
101 } 101 }
102
103 csp2_galaxy2 {
104 conda.enabled = true
105 conda.useMicromamba = true
106 conda.cacheDir = "${projectDir}/CSP2_env"
107 process.conda = "${projectDir}/conf/CSP2.yaml"
108
109 process.queue = "q8cpu"
110
111 executor.$slurm.exitReadTimeout = 120000
112
113 process.executor = 'slurm'
114 params.cores = 8
115 params.python_module = ""
116 params.mummer_module = ""
117 params.skesa_module = ""
118 params.bedtools_module = ""
119 params.bbtools_module = ""
120 params.mash_module = ""
121 params.trim_name = ""
122 }
123 } 102 }