diff CSP2/conf/profiles.config @ 36:f6cd698b6f62

"planemo upload"
author rliterman
date Thu, 05 Dec 2024 18:09:26 -0500
parents 6f4e6377ba64
children
line wrap: on
line diff
--- a/CSP2/conf/profiles.config	Thu Dec 05 16:30:58 2024 -0500
+++ b/CSP2/conf/profiles.config	Thu Dec 05 18:09:26 2024 -0500
@@ -79,7 +79,7 @@
         params.trim_name = ""
     }
     
-    csp2_galaxy1 {
+    csp2_galaxy {
         conda.enabled = true
         conda.useMicromamba = true
         conda.cacheDir = "${projectDir}/CSP2_env"
@@ -99,25 +99,4 @@
         params.mash_module = ""
         params.trim_name = ""
     }
-    
-    csp2_galaxy2 {
-        conda.enabled = true
-        conda.useMicromamba = true
-        conda.cacheDir = "${projectDir}/CSP2_env"
-        process.conda = "${projectDir}/conf/CSP2.yaml"
-        
-        process.queue = "q8cpu"
-
-        executor.$slurm.exitReadTimeout = 120000
-
-        process.executor = 'slurm'
-        params.cores = 8
-        params.python_module = ""
-        params.mummer_module = ""
-        params.skesa_module = ""
-        params.bedtools_module = ""
-        params.bbtools_module = ""
-        params.mash_module = ""
-        params.trim_name = ""
-    }
 }