Mercurial > repos > rliterman > csp2
diff CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/include/mash/sketchParameterSetup.h @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author | jpayne |
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date | Tue, 18 Mar 2025 17:55:14 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/include/mash/sketchParameterSetup.h Tue Mar 18 17:55:14 2025 -0400 @@ -0,0 +1,20 @@ +// Copyright © 2015, Battelle National Biodefense Institute (BNBI); +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy +// +// See the LICENSE.txt file included with this software for license information. + +#ifndef sketchParameterSetup_h +#define sketchParameterSetup_h + +#include "Command.h" +#include "Sketch.h" + +namespace mash { + +int sketchParameterSetup(Sketch::Parameters & parameters, const Command & command); +void warnKmerSize(const Sketch::Parameters & parameters, const Command & command, uint64_t lengthMax, const std::string & lengthMaxName, double randomChance, int kMin, int warningCount); + +} // namespace mash + +#endif