Mercurial > repos > rliterman > csp2
annotate CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/include/mash/sketchParameterSetup.h @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 17:55:14 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| jpayne@69 | 1 // Copyright © 2015, Battelle National Biodefense Institute (BNBI); |
| jpayne@69 | 2 // all rights reserved. Authored by: Brian Ondov, Todd Treangen, |
| jpayne@69 | 3 // Sergey Koren, and Adam Phillippy |
| jpayne@69 | 4 // |
| jpayne@69 | 5 // See the LICENSE.txt file included with this software for license information. |
| jpayne@69 | 6 |
| jpayne@69 | 7 #ifndef sketchParameterSetup_h |
| jpayne@69 | 8 #define sketchParameterSetup_h |
| jpayne@69 | 9 |
| jpayne@69 | 10 #include "Command.h" |
| jpayne@69 | 11 #include "Sketch.h" |
| jpayne@69 | 12 |
| jpayne@69 | 13 namespace mash { |
| jpayne@69 | 14 |
| jpayne@69 | 15 int sketchParameterSetup(Sketch::Parameters & parameters, const Command & command); |
| jpayne@69 | 16 void warnKmerSize(const Sketch::Parameters & parameters, const Command & command, uint64_t lengthMax, const std::string & lengthMaxName, double randomChance, int kMin, int warningCount); |
| jpayne@69 | 17 |
| jpayne@69 | 18 } // namespace mash |
| jpayne@69 | 19 |
| jpayne@69 | 20 #endif |