Mercurial > repos > rliterman > csp2

changeset 64:6f3b67127e44

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"planemo upload"
author rliterman
date Thu, 19 Dec 2024 14:35:57 -0500
parents b87f07ac9edc
children c2a886313008
files csp2_snp.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/csp2_snp.xml	Thu Dec 19 14:02:04 2024 -0500
+++ b/csp2_snp.xml	Thu Dec 19 14:35:57 2024 -0500
@@ -48,7 +48,7 @@
         #for _, $read_file in enumerate($query_reads.list):
                 ln -sf ${read_file} ./queries/${read_file.element_identifier};
         #end for
-        export QUERY_FASTA_ARG="--reads ./queries";
+        export QUERY_READS_ARG="--reads ./queries";
 #end if
 
 #if (str($ref_reads.ref_reads_select) == "none"):
@@ -63,7 +63,7 @@
         #for _, $read_file in enumerate($ref_reads.list):
                 ln -sf ${read_file} ./references/${read_file.element_identifier};
         #end for
-        export REF_FASTA_ARG="--ref_reads ./references";
+        export REF_READS_ARG="--ref_reads ./references";
 #end if
 
 if [ -n "$trim_name" ] && [ "$trim_name" != "None" ]; then