| Previous changeset 46:d273453b30bb (2019-05-07) Next changeset 48:fc7a28de6aa0 (2019-05-08) |
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Commit message:
planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty |
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modified:
1_map_reads.xml 2_call_sites.xml 3_filter_regions.xml 4_merge_sites.xml 5_call_consensus.xml 6_merge_vcfs.xml 7_smp_matrix.xml |
| 1_map_reads.xml |
| diff -r d273453b30bb -r 1667e4c08344 1_map_reads.xml |
| 1_map_reads.xml |
| --- a/1_map_reads.xml Tue May 07 16:01:52 2019 -0400 +++ b/1_map_reads.xml Tue May 07 16:12:09 2019 -0400 @@ -3,8 +3,8 @@ <requirements> <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="2.3.4">bowtie2</requirement> - <requirement type="package" version="1.5.11">boto3</requirement> - <requirement type="package" version="3.6.0">python</requirement> + <requirement type="package" version="1.9.134">boto3</requirement> + <requirement type="package" version="3.7.3">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && |
| 2_call_sites.xml |
| diff -r d273453b30bb -r 1667e4c08344 2_call_sites.xml |
| 2_call_sites.xml |
| --- a/2_call_sites.xml Tue May 07 16:01:52 2019 -0400 +++ b/2_call_sites.xml Tue May 07 16:12:09 2019 -0400 @@ -6,8 +6,8 @@ <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package">picard</requirement> <requirement type="package">varscan</requirement> - <requirement type="package" version="1.5.11">boto3</requirement> - <requirement type="package" version="3.6.0">python</requirement> + <requirement type="package" version="1.9.134">boto3</requirement> + <requirement type="package" version="3.7.3">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && |
| 3_filter_regions.xml |
| diff -r d273453b30bb -r 1667e4c08344 3_filter_regions.xml |
| 3_filter_regions.xml |
| --- a/3_filter_regions.xml Tue May 07 16:01:52 2019 -0400 +++ b/3_filter_regions.xml Tue May 07 16:12:09 2019 -0400 @@ -4,8 +4,8 @@ <requirement type="package" version="1.6">samtools</requirement> <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="1.0.1">snp-pipeline</requirement> - <requirement type="package" version="1.5.11">boto3</requirement> - <requirement type="package" version="3.6.0">python</requirement> + <requirement type="package" version="1.9.134">boto3</requirement> + <requirement type="package" version="3.7.3">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && |
| 4_merge_sites.xml |
| diff -r d273453b30bb -r 1667e4c08344 4_merge_sites.xml |
| 4_merge_sites.xml |
| --- a/4_merge_sites.xml Tue May 07 16:01:52 2019 -0400 +++ b/4_merge_sites.xml Tue May 07 16:12:09 2019 -0400 @@ -5,7 +5,7 @@ <requirement type="package" version="1.2">samtools</requirement> <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="1.0.1">snp-pipeline</requirement> - <requirement type="package" version="3.6.0">python</requirement> + <requirement type="package" version="3.7.3">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && |
| 5_call_consensus.xml |
| diff -r d273453b30bb -r 1667e4c08344 5_call_consensus.xml |
| 5_call_consensus.xml |
| --- a/5_call_consensus.xml Tue May 07 16:01:52 2019 -0400 +++ b/5_call_consensus.xml Tue May 07 16:12:09 2019 -0400 @@ -3,8 +3,8 @@ <requirements> <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="1.0.1">snp-pipeline</requirement> - <requirement type="package" version="1.5.11">boto3</requirement> - <requirement type="package" version="3.6.0">python</requirement> + <requirement type="package" version="1.9.134">boto3</requirement> + <requirement type="package" version="3.7.3">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && |
| 6_merge_vcfs.xml |
| diff -r d273453b30bb -r 1667e4c08344 6_merge_vcfs.xml |
| 6_merge_vcfs.xml |
| --- a/6_merge_vcfs.xml Tue May 07 16:01:52 2019 -0400 +++ b/6_merge_vcfs.xml Tue May 07 16:12:09 2019 -0400 @@ -6,7 +6,7 @@ <requirement type="package" version="1.0.1">snp-pipeline</requirement> <requirement type="package" version="0.2.5">tabix</requirement> <requirement type="package" version="1.6">htslib</requirement> - <requirement type="package" version="3.6.0">python</requirement> + <requirement type="package" version="3.7.3">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && |
| 7_smp_matrix.xml |
| diff -r d273453b30bb -r 1667e4c08344 7_smp_matrix.xml |
| 7_smp_matrix.xml |
| --- a/7_smp_matrix.xml Tue May 07 16:01:52 2019 -0400 +++ b/7_smp_matrix.xml Tue May 07 16:12:09 2019 -0400 @@ -5,7 +5,7 @@ <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="1.0.1">snp-pipeline</requirement> <requirement type="package" version="0.2.5">tabix</requirement> - <requirement type="package" version="3.6.0">python</requirement> + <requirement type="package" version="3.7.3">python</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && |