hg clone https://toolrepo.galaxytrakr.org/repos/jpayne/snp_pipeline
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| of high-confidence SNPs, or lookup cached sitecall | 1.0.1 | 16.1 | |
| into a multi-sample VCF with consensus SNPs | 1.0.1 | 16.1 | |
| from multiple samples | 1.0.1 | 16.1 | |
| for a sample, or lookup cached consensus SNP calls | 1.0.1 | 16.1 | |
| and associated distance metrics | 1.0.1 | 16.1 | |
| to index, or lookup cached alignment | 1.0.1 | 16.1 | |
| based on SNP location, or lookup cached filtered sitecall | 1.0.1 | 16.1 | |
| Name | steps | format-version | annotation |
|---|---|---|---|
| CFSAN SNP Pipeline | 13 | 0.1 | |