| Previous changeset 27:1044c9a132c5 (2018-01-31) Next changeset 29:e488850b2507 (2018-01-31) |
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Commit message:
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty |
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modified:
6_merge_vcfs.xml |
| 6_merge_vcfs.xml |
| diff -r 1044c9a132c5 -r 1d77f9fb51f3 6_merge_vcfs.xml |
| 6_merge_vcfs.xml |
| --- a/6_merge_vcfs.xml Wed Jan 31 13:24:56 2018 -0500 +++ b/6_merge_vcfs.xml Wed Jan 31 13:34:32 2018 -0500 @@ -8,9 +8,10 @@ <requirement type="package" version="3.4">python3</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ - export LD_LIBRARY_PATH="\$LD_LIBRARY_PATH:\$CONDA_DEFAULT_ENV/lib" && + export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && env && ls -lah \$CONDA_DEFAULT_ENV && + ls -lah \$CONDA_DEFAULT_ENV\lib && python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf" #for $vcf in $vcfs -n $vcf.element_identifier -f $vcf |