| Previous changeset 38:a057e69d13a7 (2018-02-05) Next changeset 40:02733e77f84f (2018-02-14) |
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Commit message:
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty |
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modified:
1_map_reads.xml 4_merge_sites.xml |
| 1_map_reads.xml |
| diff -r a057e69d13a7 -r 1fe3b14f7f1b 1_map_reads.xml |
| 1_map_reads.xml |
| --- a/1_map_reads.xml Mon Feb 05 13:25:39 2018 -0500 +++ b/1_map_reads.xml Wed Feb 14 13:06:44 2018 -0500 @@ -7,6 +7,7 @@ <!-- <requirement type="package" version="3.5">python</requirement> --> </requirements> <command detect_errors="exit_code"><![CDATA[ + env && #if $reads.reads_select == 'collection' export files="$reads.coll.forward $reads.coll.reverse" && export params="-1 $reads.coll.forward -2 $reads.coll.reverse" && |
| 4_merge_sites.xml |
| diff -r a057e69d13a7 -r 1fe3b14f7f1b 4_merge_sites.xml |
| 4_merge_sites.xml |
| --- a/4_merge_sites.xml Mon Feb 05 13:25:39 2018 -0500 +++ b/4_merge_sites.xml Wed Feb 14 13:06:44 2018 -0500 @@ -25,10 +25,10 @@ <test> <param name="calls"> <collection type="list"> - <element name="sample1" value="samples/sample1/var.flt_preserved.vcf" /> - <element name="sample2" value="samples/sample2/var.flt_preserved.vcf" /> - <element name="sample3" value="samples/sample3/var.flt_preserved.vcf" /> - <element name="sample4" value="samples/sample4/var.flt_preserved.vcf" /> + <element name="sample1" value="samples/sample1/var.flt_preserved.vcf" ftype="fastqsanger" /> + <element name="sample2" value="samples/sample2/var.flt_preserved.vcf" ftype="fastqsanger" /> + <element name="sample3" value="samples/sample3/var.flt_preserved.vcf" ftype="fastqsanger" /> + <element name="sample4" value="samples/sample4/var.flt_preserved.vcf" ftype="fastqsanger" /> </collection> </param> <!-- <output name="snplist" value="snplist.txt" /> --> |