| Previous changeset 18:75558ffe3e68 (2024-07-15) Next changeset 20:133571bf891f (2024-07-15) |
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Commit message:
planemo upload |
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modified:
cfsan_bettercallsal.xml |
| cfsan_bettercallsal.xml |
| diff -r 75558ffe3e68 -r 4b304d77bbfb cfsan_bettercallsal.xml |
| cfsan_bettercallsal.xml |
| --- a/cfsan_bettercallsal.xml Mon Jul 15 11:01:13 2024 -0400 +++ b/cfsan_bettercallsal.xml Mon Jul 15 11:20:22 2024 -0400 @@ -36,7 +36,7 @@ $__tool_directory__/0.7.0/cpipes --pipeline bettercallsal --input \${input_path} - --output \${pwd_path}/cpipes-output + --output cpipes-output --fq_suffix '${input_read_type_cond.fq_suffix}' #if (str($input_read_type_cond.input_read_type) == "single_long"): --fq_single_end true @@ -59,8 +59,8 @@ --fq_filename_delim_idx $fq_filename_delim_idx -profile gxkubernetes; mv './cpipes-output/bettercallsal-multiqc/multiqc_report.html' './multiqc_report.html' || exit 1; - rm -rf ./cpipes-output > || exit 1; - rm -rf ./work || exit 1 + rm -rf ./cpipes-output || exit 1; + rm -rf ./work || exit 1; ]]></command> <inputs> <conditional name="input_read_type_cond"> |