| bettercallsal is an automated workflow to assign Salmonella serotype based on NCBI Pathogen Detection Project for Salmonella. It uses MASH to reduce the search space followed by additional genome filtering with sourmash. It then performs genome based alignment with kma followed by count generation using salmon. |
hg clone https://toolrepo.galaxytrakr.org/repos/kkonganti/cfsan_bettercallsal
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| An automated workflow to assign Salmonella serotype based on NCBI Pathogen Detection Project for Salmonella. | 0.7.0+galaxy23.1 | 16.01 | |