Repository 'snp_pipeline'
hg clone https://toolrepo.galaxytrakr.org/repos/jpayne/snp_pipeline

Changeset 22:54255ae587ec (2018-01-31)
Previous changeset 21:46b274d082a9 (2018-01-31) Next changeset 23:43113449a74f (2018-01-31)
Commit message:
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
modified:
6_merge_vcfs.xml
6_merge_vcfs.xml
diff -r 46b274d082a9 -r 54255ae587ec 6_merge_vcfs.xml
6_merge_vcfs.xml
--- a/6_merge_vcfs.xml Wed Jan 31 12:50:31 2018 -0500
+++ b/6_merge_vcfs.xml Wed Jan 31 12:57:26 2018 -0500
@@ -9,9 +9,6 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         env &&
-        which bcftools &&
-        which snp-pipeline &&
-        which python   &&
         ldconfig -p | grep "libbz2.so*" &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
             #for $vcf in $vcfs