| Previous changeset 42:11296a86e01b (2018-03-08) Next changeset 44:e7cac7790476 (2018-04-25) |
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Commit message:
planemo upload commit 0399c6bd696435a7a99d8d8b4c237e5a78ee5856-dirty |
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modified:
1_map_reads.xml |
| 1_map_reads.xml |
| diff -r 11296a86e01b -r 62531f7399dc 1_map_reads.xml |
| 1_map_reads.xml |
| --- a/1_map_reads.xml Thu Mar 08 11:10:45 2018 -0500 +++ b/1_map_reads.xml Wed Apr 25 15:54:10 2018 -0400 @@ -8,7 +8,6 @@ </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && - env && #if $reads.reads_select == 'collection' export files="$reads.coll.forward $reads.coll.reverse" && export params="-1 $reads.coll.forward -2 $reads.coll.reverse" && @@ -81,11 +80,11 @@ <option value="history">Two FASTQ datasets from your history</option> </param> <when value="collection"> - <param label="Paired reads" name="coll" type="data_collection" format="fastq,fastqsanger" collection_type="paired" /> + <param label="Paired reads" name="coll" type="data_collection" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" collection_type="paired" /> </when> <when value="history"> - <param label="Forward reads" type="data" name="forward" format="fastq,fastqsanger" /> - <param label="Reverse reads" type="data" name="reverse" format="fastq,fastqsanger" /> + <param label="Forward reads" type="data" name="forward" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" /> + <param label="Reverse reads" type="data" name="reverse" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" /> </when> </conditional> </inputs> |