| Previous changeset 6:83ed52d5af32 (2023-06-06) Next changeset 8:22165d5e5e0a (2023-06-06) |
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Commit message:
"planemo upload" |
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modified:
cfsan_bettercallsal.xml |
| cfsan_bettercallsal.xml |
| diff -r 83ed52d5af32 -r 7d2019190ba2 cfsan_bettercallsal.xml |
| cfsan_bettercallsal.xml |
| --- a/cfsan_bettercallsal.xml Tue Jun 06 10:05:24 2023 -0400 +++ b/cfsan_bettercallsal.xml Tue Jun 06 10:22:20 2023 -0400 @@ -148,7 +148,7 @@ **Testing and Validation** The CPIPES - bettercallsal Nextflow pipeline has been wrapped to make it work in Galaxy. It takes in either paired or unpaired short reads list as an input -and generates a MultiQC report in the final step. The pipeline has been tested on 2x300 bp MiSeq and 2x150 bp NextSeq reads and has shown to call multiple +and generates a MultiQC report in the final step. The pipeline has been tested on 2x300 bp MiSeq and 2x150 bp NextSeq simulated reads and has shown to call multiple Salmonella serotypes with up to ~95% accuracy. The pipeline has also been tested on metagenomics data sets from Peach and Papaya outbreaks as discussed in our preprint (https://www.biorxiv.org/content/10.1101/2023.04.06.535929v1.full). All the original testing and validation was done on the command line on the CFSAN Raven2 HPC Cluster. @@ -160,7 +160,7 @@ **Outputs** -The main output files are: +The main output file is a: :: |