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Changeset 12:8764af78e270 (2018-01-30)

Previous changeset 11:772f310d2506 (2018-01-30) Next changeset 13:6adaecff5f2b (2018-01-31)

Commit message:
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty

modified:
1_map_reads.xml
4_merge_sites.xml
5_call_consensus.xml
6_merge_vcfs.xml
7_smp_matrix.xml

diff -r 772f310d2506 -r 8764af78e270 1_map_reads.xml

--- a/1_map_reads.xml Tue Jan 30 17:15:09 2018 -0500
+++ b/1_map_reads.xml Tue Jan 30 17:21:24 2018 -0500
@@ -1,6 +1,7 @@
<tool id="map_reads" name="1. Map Reads" version="1.0.1" profile="16.10">
     <description>to index, or lookup cached alignment</description>
     <requirements>
+        <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="2.3.4">bowtie2</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
         <requirement type="package" version="3.4">python3</requirement>

4_merge_sites.xml

diff -r 772f310d2506 -r 8764af78e270 4_merge_sites.xml

4_merge_sites.xml

--- a/4_merge_sites.xml Tue Jan 30 17:15:09 2018 -0500
+++ b/4_merge_sites.xml Tue Jan 30 17:21:24 2018 -0500
@@ -3,6 +3,7 @@
     <requirements>
         <requirement type="package" version="2.2.6">bowtie2</requirement>
         <requirement type="package" version="1.2">samtools</requirement>
+        <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package">snp-pipeline</requirement>
         <requirement type="package" version="3.4">python3</requirement>
     </requirements>

5_call_consensus.xml

diff -r 772f310d2506 -r 8764af78e270 5_call_consensus.xml

5_call_consensus.xml

--- a/5_call_consensus.xml Tue Jan 30 17:15:09 2018 -0500
+++ b/5_call_consensus.xml Tue Jan 30 17:21:24 2018 -0500
@@ -1,6 +1,7 @@
<tool id="call_consensus" name="5. Call consensus SNPs" version="1.0.1" profile="16.10">
     <description>for a sample, or lookup cached consensus SNP calls</description>
     <requirements>
+        <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
         <requirement type="package" version="3.4">python3</requirement>

6_merge_vcfs.xml

diff -r 772f310d2506 -r 8764af78e270 6_merge_vcfs.xml

6_merge_vcfs.xml

--- a/6_merge_vcfs.xml Tue Jan 30 17:15:09 2018 -0500
+++ b/6_merge_vcfs.xml Tue Jan 30 17:21:24 2018 -0500
@@ -2,6 +2,7 @@
     <description>into a multi-sample VCF with consensus SNPs</description>
     <requirements>
         
+        <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package">tabix</requirement>
         <requirement type="package" version="3.4">python3</requirement>

7_smp_matrix.xml

diff -r 772f310d2506 -r 8764af78e270 7_smp_matrix.xml

7_smp_matrix.xml

--- a/7_smp_matrix.xml Tue Jan 30 17:15:09 2018 -0500
+++ b/7_smp_matrix.xml Tue Jan 30 17:21:24 2018 -0500
@@ -1,6 +1,7 @@
<tool id="snp_matrix" name="7. Create a SNP matrix" version="1.0.1" profile="16.10">
     <description>and associated distance metrics</description>
     <requirements>
+        <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package">tabix</requirement>
         <requirement type="package" version="3.4">python3</requirement>