| Previous changeset 13:74baf1a6c3bd (2023-09-05) Next changeset 15:1972677994a6 (2023-09-07) |
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Commit message:
"planemo upload" |
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modified:
0.6.1/conf/computeinfra.config 0.6.1/conf/modules.config |
| 0.6.1/conf/computeinfra.config |
| diff -r 74baf1a6c3bd -r b0a37e88ecb5 0.6.1/conf/computeinfra.config |
| 0.6.1/conf/computeinfra.config |
| --- a/0.6.1/conf/computeinfra.config Tue Sep 05 13:04:15 2023 -0400 +++ b/0.6.1/conf/computeinfra.config Thu Sep 07 10:13:31 2023 -0400 @@ -128,7 +128,7 @@ kondagac { process.executor = 'slurm' executor.$slurm.exitReadTimeout = 120000 - process.queue = 'q8cpu' + process.queue = 'centriflaken' process.cpus = 4 singularity.enabled = false docker.enabled = false |
| 0.6.1/conf/modules.config |
| diff -r 74baf1a6c3bd -r b0a37e88ecb5 0.6.1/conf/modules.config |
| 0.6.1/conf/modules.config |
| --- a/0.6.1/conf/modules.config Tue Sep 05 13:04:15 2023 -0400 +++ b/0.6.1/conf/modules.config Thu Sep 07 10:13:31 2023 -0400 @@ -14,78 +14,54 @@ ![0].contains(task.exitStatus) ? dynamic_retry(task.attempt, 10) : 'finish' } - maxRetries = 1 + maxRetries = 80 withLabel: 'process_femto' { - cpus = { 1 * task.attempt } - memory = { 1.GB * task.attempt } - time = { 1.h * task.attempt } + cpus = 2 } withLabel: 'process_pico' { - cpus = { min_cpus(2) * task.attempt } - memory = { 4.GB * task.attempt } - time = { 2.h * task.attempt } + cpus = min_cpus(2) } withLabel: 'process_nano' { - cpus = { min_cpus(4) * task.attempt } - memory = { 8.GB * task.attempt } - time = { 4.h * task.attempt } + cpus = min_cpus(4) } withLabel: 'process_micro' { - cpus = { min_cpus(8) * task.attempt } - memory = { 16.GB * task.attempt } - time = { 8.h * task.attempt } + cpus = min_cpus(8) } withLabel: 'process_only_mem_low' { - cpus = { 1 * task.attempt } - memory = { 60.GB * task.attempt } - time = { 20.h * task.attempt } + cpus = 2 } withLabel: 'process_only_mem_medium' { - cpus = { 1 * task.attempt } - memory = { 100.GB * task.attempt } - time = { 30.h * task.attempt } + cpus = 2 } withLabel: 'process_only_mem_high' { - cpus = { 1 * task.attempt } - memory = { 128.GB * task.attempt } - time = { 60.h * task.attempt } + cpus = 2 } withLabel: 'process_low' { - cpus = { min_cpus(10) * task.attempt } - memory = { 60.GB * task.attempt } - time = { 20.h * task.attempt } + cpus = min_cpus(8) } withLabel: 'process_medium' { - cpus = { min_cpus(10) * task.attempt } - memory = { 100.GB * task.attempt } - time = { 30.h * task.attempt } + cpus = min_cpus(8) } withLabel: 'process_high' { - cpus = { min_cpus(10) * task.attempt } - memory = { 128.GB * task.attempt } - time = { 60.h * task.attempt } + cpus = min_cpus(8) } withLabel: 'process_higher' { - cpus = { min_cpus(10) * task.attempt } - memory = { 256.GB * task.attempt } - time = { 60.h * task.attempt } + cpus = min_cpus(8) } withLabel: 'process_gigantic' { - cpus = { min_cpus(10) * task.attempt } - memory = { 512.GB * task.attempt } - time = { 60.h * task.attempt } + cpus = min_cpus(8) } } |