Repository 'snp_pipeline'
hg clone https://toolrepo.galaxytrakr.org/repos/jpayne/snp_pipeline

Changeset 24:cf6f7548f15a (2018-01-31)
Previous changeset 23:43113449a74f (2018-01-31) Next changeset 25:f986ff235d69 (2018-01-31)
Commit message:
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
modified:
6_merge_vcfs.xml
6_merge_vcfs.xml
diff -r 43113449a74f -r cf6f7548f15a 6_merge_vcfs.xml
6_merge_vcfs.xml
--- a/6_merge_vcfs.xml Wed Jan 31 13:01:06 2018 -0500
+++ b/6_merge_vcfs.xml Wed Jan 31 13:08:27 2018 -0500
@@ -9,6 +9,7 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         env &&
+        export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$CONDA_DEFAULT/lib" &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
             #for $vcf in $vcfs
                 -n $vcf.element_identifier -f $vcf