| Previous changeset 48:fc7a28de6aa0 (2019-05-08) Next changeset 50:e90a783a4e8b (2019-05-09) |
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Commit message:
planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty |
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modified:
5_call_consensus.xml |
| 5_call_consensus.xml |
| diff -r fc7a28de6aa0 -r ebfa7fd256aa 5_call_consensus.xml |
| 5_call_consensus.xml |
| --- a/5_call_consensus.xml Wed May 08 11:10:14 2019 -0400 +++ b/5_call_consensus.xml Wed May 08 11:43:17 2019 -0400 @@ -9,7 +9,7 @@ <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && #set $identifier = $call_pileup.name.split(' ')[0] - python $__tool_directory__/snp-cache.py snp_consenus_calls + python3 $__tool_directory__/snp-cache.py snp_consenus_calls "\$(md5sum $snps $calls $call_pileup | cut -c -32 | md5sum | cut -c -32)" -c " mkdir ./$identifier/ |