Mercurial > repos > estrain > amrformat
annotate amrformat.xml @ 3:508c2b662f0d
Uploaded
| author | estrain |
|---|---|
| date | Wed, 29 Jan 2020 16:42:31 -0500 |
| parents | ae0d90df065f |
| children | ca30f4c285de |
| rev | line source |
|---|---|
| estrain@1 | 1 <tool id="amrformat" name="amrformat" version="0.0.1"> |
| estrain@3 | 2 <description>Format AMRFinder Output</description> |
| estrain@1 | 3 <requirements> |
| estrain@1 | 4 </requirements> |
| estrain@1 | 5 |
| estrain@1 | 6 <command detect_errors="exit_code"><![CDATA[ |
| estrain@1 | 7 |
| estrain@2 | 8 perl $__tool_directory__/amrformat.pl $infile results.tsv |
| estrain@1 | 9 |
| estrain@1 | 10 ]]></command> |
| estrain@1 | 11 <inputs> |
| estrain@1 | 12 <param name="infile" type="tabular" label="Select Input File"> |
| estrain@1 | 13 </inputs> |
| estrain@1 | 14 <outputs> |
| estrain@1 | 15 <data format="tabular" name="results.tsv" label="${tool.name} on ${on_string}" from_work_dir="*.tsv"/> |
| estrain@1 | 16 </outputs> |
| estrain@1 | 17 |
| estrain@1 | 18 <help><![CDATA[ |
| estrain@1 | 19 |
| estrain@1 | 20 ]]></help> |
| estrain@1 | 21 </tool> |