Mercurial > repos > estrain > ncbi_amrfinderplus
comparison test-data/2019-08-27.1/changes.txt @ 3:dddde93d5c20
Uploaded
| author | estrain |
|---|---|
| date | Fri, 06 Mar 2020 10:43:40 -0500 |
| parents | |
| children |
comparison
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inserted
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| 2:1d11ddcf3c4a | 3:dddde93d5c20 |
|---|---|
| 1 --------------------------------------------------------------------- | |
| 2 Changes included in 2019-08-27.1 | |
| 3 --------------------------------------------------------------------- | |
| 4 | |
| 5 This release includes a new database file to correspond with AMRFinderPlus | |
| 6 version 3.1 that includes information for blacklisting of a few "plus" proteins | |
| 7 common in some organisms that are interesting when found in others. This | |
| 8 release also includes the usual new AMR genes and alleles; the fixing of some | |
| 9 typos; removal of a redundant point mutation reference sequence; and the | |
| 10 addition, reoorganization, and renaming of some "plus" genes. | |
| 11 | |
| 12 - Reference Gene Catalog protein and allele changes: | |
| 13 | |
| 14 Total in prev: 6110 | |
| 15 Total in release: 6274 | |
| 16 Removed: 18 | |
| 17 Added: 182 | |
| 18 Changed: 33 | |
| 19 Removed emrD3 WP_000850833.1 | |
| 20 Removed blaOXA-671 WP_016660101.1 | |
| 21 Removed arsB-mob WP_063116263.1 | |
| 22 Removed gyrA_A67S WP_001281242.1 | |
| 23 Removed gyrA_A84P WP_001281242.1 | |
| 24 Removed gyrA_D87G WP_001281242.1 | |
| 25 Removed gyrA_D87H WP_001281242.1 | |
| 26 Removed gyrA_D87N WP_001281242.1 | |
| 27 Removed gyrA_D87V WP_001281242.1 | |
| 28 Removed gyrA_D87Y WP_001281242.1 | |
| 29 Removed gyrA_G81C WP_001281242.1 | |
| 30 Removed gyrA_H80P WP_001281242.1 | |
| 31 Removed gyrA_N57K WP_001281242.1 | |
| 32 Removed gyrA_Q106H WP_001281242.1 | |
| 33 Removed gyrA_S83F WP_001281242.1 | |
| 34 Removed gyrA_S83I WP_001281242.1 | |
| 35 Removed gyrA_S83L WP_001281242.1 | |
| 36 Removed gyrA_S83W WP_001281242.1 | |
| 37 Added arsB AAA21095.1 | |
| 38 Added arsC AAA21096.1 | |
| 39 Added arsR AAA25636.1 | |
| 40 Added arsB AAA25637.1 | |
| 41 Added copC AAA25808.1 | |
| 42 Added arsR AAA27587.1 | |
| 43 Added arsB AAA27588.1 | |
| 44 Added arsR AAB09624.1 | |
| 45 Added arsC AAB09628.1 | |
| 46 Added arsC AAB42203.1 | |
| 47 Added arsB AAB42204.1 | |
| 48 Added ipaH9.8 AAC23714.1 | |
| 49 Added pic AAD23953.1 | |
| 50 Added efa1 AAD49229.2 | |
| 51 Added iha AAG55323.1 | |
| 52 Added stb AAK29747.1 | |
| 53 Added efa1 AAL57562.1 | |
| 54 Added pic AAN78833.1 | |
| 55 Added iha AAN82058.1 | |
| 56 Added cif AAQ07241.1 | |
| 57 Added iha AAT68782.1 | |
| 58 Added efa1 AAV91321.1 | |
| 59 Added sab AAZ76500.1 | |
| 60 Added senB AAZ89288.1 | |
| 61 Added iha ABB17254.1 | |
| 62 Added emrD3 ABQ18953.1 | |
| 63 Added kdeA ABR76310.1 | |
| 64 Added lmrC ABX00624.1 | |
| 65 Added iha ACB20136.1 | |
| 66 Added iha ACD08748.1 | |
| 67 Added amvA ACQ82816.1 | |
| 68 Added ipaH4 ADA74402.1 | |
| 69 Added iha ADI47068.1 | |
| 70 Added iha ADN47767.1 | |
| 71 Added arsR ADZ44504.1 | |
| 72 Added iha AEQ14190.1 | |
| 73 Added stb AET14866.1 | |
| 74 Added arsR AET17094.1 | |
| 75 Added pic AFS72825.1 | |
| 76 Added iha AFS75030.1 | |
| 77 Added asr BAA15331.2 | |
| 78 Added arsB BAA24823.1 | |
| 79 Added arsC BAA24824.1 | |
| 80 Added espK BAB34991.1 | |
| 81 Added fieF BAB89353.1 | |
| 82 Added fieF BAE77395.1 | |
| 83 Added arsR BAE77793.1 | |
| 84 Added cif BAG66370.1 | |
| 85 Added iha BAI27255.1 | |
| 86 Added efa1 BAI32294.1 | |
| 87 Added iha CAC39288.1 | |
| 88 Added efa1 CAC81883.1 | |
| 89 Added efa1 CAD30848.1 | |
| 90 Added stb CAD87835.1 | |
| 91 Added iha CAE55782.1 | |
| 92 Added efa1 CAI43818.1 | |
| 93 Added hlyA-alpha CAQ77251.1 | |
| 94 Added iha CAR09712.2 | |
| 95 Added pic CAU99295.1 | |
| 96 Added iha CBW53086.1 | |
| 97 Added ipaH5 EID63069.1 | |
| 98 Added fosB WP_000920239.1 | |
| 99 Added dfrA36 WP_000949574.1 | |
| 100 Added mphM WP_001041372.1 | |
| 101 Added cfr(B) WP_002405682.1 | |
| 102 Added mphK WP_003246254.1 | |
| 103 Added blaPDC-374 WP_003454242.1 | |
| 104 Added tet(56) WP_003635403.1 | |
| 105 Added blaCDD-1 WP_009901927.1 | |
| 106 Added mphH WP_015776248.1 | |
| 107 Added erm(49) WP_019728092.1 | |
| 108 Added blaCDD-2 WP_021361759.1 | |
| 109 Added mphN WP_024127776.1 | |
| 110 Added tet(X) WP_024160783.1 | |
| 111 Added blaPDC-361 WP_031638595.1 | |
| 112 Added tet(G) WP_032489471.1 | |
| 113 Added vga(E) WP_032495718.1 | |
| 114 Added blaACT-72 WP_045895620.1 | |
| 115 Added blaACT-70 WP_047364854.1 | |
| 116 Added blaACT-69 WP_048209719.1 | |
| 117 Added ble WP_063842967.1 | |
| 118 Added blaOXA-671 WP_081401608.1 | |
| 119 Added icr-Mo WP_082741435.1 | |
| 120 Added blaOXA-653 WP_087554513.1 | |
| 121 Added tet(X) WP_094309310.1 | |
| 122 Added blaMOX-13 WP_096807444.1 | |
| 123 Added blaFOX-15 WP_096807445.1 | |
| 124 Added blaCMY-157 WP_096807446.1 | |
| 125 Added blaIMP-69 WP_099156051.1 | |
| 126 Added blaPDC-249 WP_104009845.1 | |
| 127 Added blaACT-58 WP_111965422.1 | |
| 128 Added blaACT-62 WP_111967096.1 | |
| 129 Added blaACT-63 WP_112780466.1 | |
| 130 Added blaOXA-727 WP_114272532.1 | |
| 131 Added blaOXA-731 WP_116786833.1 | |
| 132 Added blaOXA-728 WP_116786835.1 | |
| 133 Added blaPDC-367 WP_121286063.1 | |
| 134 Added blaPDC-364 WP_121347819.1 | |
| 135 Added blaFLC-1 WP_123061077.1 | |
| 136 Added blaPDC-371 WP_126118969.1 | |
| 137 Added blaPDC-353 WP_128550481.1 | |
| 138 Added blaVIM-67 WP_142875125.1 | |
| 139 Added blaADC-196 WP_145850033.1 | |
| 140 Added blaAQU WP_148044401.1 | |
| 141 Added blaAQU WP_148044402.1 | |
| 142 Added dfrA29 WP_148044403.1 | |
| 143 Added blaCAM-1 WP_148044405.1 | |
| 144 Added blaCMY-165 WP_148044406.1 | |
| 145 Added blaCMY-166 WP_148044407.1 | |
| 146 Added blaCMY-167 WP_148044408.1 | |
| 147 Added blaCTX-M-227 WP_148044409.1 | |
| 148 Added blaCTX-M-228 WP_148044410.1 | |
| 149 Added blaCTX-M-229 WP_148044411.1 | |
| 150 Added blaDHA-29 WP_148044412.1 | |
| 151 Added blaGES-42 WP_148044413.1 | |
| 152 Added blaGES-43 WP_148044414.1 | |
| 153 Added blaIMP-82 WP_148044416.1 | |
| 154 Added blaIMP-83 WP_148044417.1 | |
| 155 Added blaIMP-84 WP_148044418.1 | |
| 156 Added blaKPC-41 WP_148044419.1 | |
| 157 Added blaKPC-45 WP_148044420.1 | |
| 158 Added blaKPC-46 WP_148044421.1 | |
| 159 Added blaOXA-835 WP_148044422.1 | |
| 160 Added blaOXA-836 WP_148044423.1 | |
| 161 Added blaPAU-1 WP_148044424.1 | |
| 162 Added blaPDC-196 WP_148044425.1 | |
| 163 Added blaPDC-334 WP_148044426.1 | |
| 164 Added blaPDC-335 WP_148044427.1 | |
| 165 Added blaPDC-336 WP_148044428.1 | |
| 166 Added blaPDC-337 WP_148044429.1 | |
| 167 Added blaPDC-338 WP_148044430.1 | |
| 168 Added blaPDC-339 WP_148044431.1 | |
| 169 Added blaPDC-340 WP_148044432.1 | |
| 170 Added blaPDC-341 WP_148044433.1 | |
| 171 Added blaPDC-342 WP_148044434.1 | |
| 172 Added blaPDC-343 WP_148044435.1 | |
| 173 Added blaPDC-344 WP_148044436.1 | |
| 174 Added blaPDC-345 WP_148044437.1 | |
| 175 Added blaPDC-346 WP_148044438.1 | |
| 176 Added blaPDC-347 WP_148044439.1 | |
| 177 Added blaPDC-348 WP_148044440.1 | |
| 178 Added blaPDC-349 WP_148044441.1 | |
| 179 Added blaPDC-350 WP_148044442.1 | |
| 180 Added blaPDC-351 WP_148044443.1 | |
| 181 Added blaPDC-352 WP_148044444.1 | |
| 182 Added blaPDC-354 WP_148044445.1 | |
| 183 Added blaPDC-355 WP_148044446.1 | |
| 184 Added blaPDC-356 WP_148044447.1 | |
| 185 Added blaPDC-357 WP_148044448.1 | |
| 186 Added blaPDC-358 WP_148044449.1 | |
| 187 Added blaPDC-359 WP_148044450.1 | |
| 188 Added blaPDC-360 WP_148044451.1 | |
| 189 Added blaPDC-362 WP_148044452.1 | |
| 190 Added blaPDC-363 WP_148044453.1 | |
| 191 Added blaPDC-365 WP_148044454.1 | |
| 192 Added blaPDC-366 WP_148044455.1 | |
| 193 Added blaPDC-368 WP_148044456.1 | |
| 194 Added blaPDC-369 WP_148044457.1 | |
| 195 Added blaPDC-370 WP_148044458.1 | |
| 196 Added blaPDC-372 WP_148044459.1 | |
| 197 Added blaPDC-373 WP_148044460.1 | |
| 198 Added blaPDC-375 WP_148044461.1 | |
| 199 Added blaPDC-376 WP_148044462.1 | |
| 200 Added blaPDC-377 WP_148044463.1 | |
| 201 Added blaPDC-378 WP_148044464.1 | |
| 202 Added blaPDC-379 WP_148044465.1 | |
| 203 Added blaPDC-380 WP_148044466.1 | |
| 204 Added blaPDC-381 WP_148044467.1 | |
| 205 Added blaPDC-382 WP_148044468.1 | |
| 206 Added blaPDC-383 WP_148044469.1 | |
| 207 Added blaPFM-1 WP_148044470.1 | |
| 208 Added blaTEM-241 WP_148044472.1 | |
| 209 Added blaTEM-242 WP_148044473.1 | |
| 210 Added blaTEM-39 WP_148044474.1 | |
| 211 Added blaVEB-22 WP_148044475.1 | |
| 212 Added blaVIM-68 WP_148044476.1 | |
| 213 Added mcr-1.22 WP_148044477.1 | |
| 214 Added mcr-5.4 WP_148044478.1 | |
| 215 Added blaOXA-837 WP_148281568.1 | |
| 216 Added gyrA_H80P WP_001281243.1 | |
| 217 Added gyrA_N57K WP_001281243.1 | |
| 218 Added gyrA_S83F WP_001281243.1 | |
| 219 Changes: | |
| 220 faeG AAA24032.1 | |
| 221 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG | |
| 222 faeG AAA24035.1 | |
| 223 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG | |
| 224 faeG AAA24390.1 | |
| 225 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG | |
| 226 nccX AAA65102.1 | |
| 227 subclass METAL -> | |
| 228 merB AAA88369.1 | |
| 229 class MECURY -> MERCURY | |
| 230 subclass ORGANOMECURY -> ORGANOMERCURY | |
| 231 merC AAC33908.1 | |
| 232 class MECURY -> MERCURY | |
| 233 subclass ORGANOMECURY -> ORGANOMERCURY | |
| 234 faeG AAC34727.1 | |
| 235 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG | |
| 236 merB AAC38230.1 | |
| 237 class MECURY -> MERCURY | |
| 238 subclass ORGANOMECURY -> ORGANOMERCURY | |
| 239 merC AAC38233.1 | |
| 240 class MECURY -> MERCURY | |
| 241 subclass ORGANOMECURY -> ORGANOMERCURY | |
| 242 ipaH2 AAN43435.1 | |
| 243 gene_family ipaH9.8 -> ipaH2 | |
| 244 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH2 | |
| 245 mreA AAN68577.1 | |
| 246 subclass METAL -> | |
| 247 ipaH2 AAZ87985.1 | |
| 248 gene_family ipaH9.8 -> ipaH2 | |
| 249 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH2 | |
| 250 ipaH3 ABB62096.1 | |
| 251 gene_family ipaH9.8 -> ipaH3 | |
| 252 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH3 | |
| 253 ipaH2 ABB62098.1 | |
| 254 gene_family ipaH9.8 -> ipaH2 | |
| 255 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH2 | |
| 256 ipaH2 ABB66229.1 | |
| 257 gene_family ipaH9.8 -> ipaH2 | |
| 258 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH2 | |
| 259 ipaH1 ABF02983.1 | |
| 260 gene_family ipaH9.8 -> ipaH1 | |
| 261 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH1/H6 | |
| 262 ipaH2 ABF04028.1 | |
| 263 gene_family ipaH9.8 -> ipaH2 | |
| 264 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH2 | |
| 265 faeG ACB72721.1 | |
| 266 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG | |
| 267 ipaH2 ACD09076.1 | |
| 268 gene_family ipaH9.8 -> ipaH2 | |
| 269 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH2 | |
| 270 faeG AFH14350.1 | |
| 271 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG | |
| 272 merC BAA14138.2 | |
| 273 class MECURY -> MERCURY | |
| 274 subclass ORGANOMECURY -> ORGANOMERCURY | |
| 275 merB BAA20338.2 | |
| 276 class MECURY -> MERCURY | |
| 277 subclass ORGANOMECURY -> ORGANOMERCURY | |
| 278 merG BAA23166.1 | |
| 279 class MECURY -> MERCURY | |
| 280 merB BAB47641.1 | |
| 281 class MECURY -> MERCURY | |
| 282 subclass ORGANOMECURY -> ORGANOMERCURY | |
| 283 merB CAC86907.1 | |
| 284 class MECURY -> MERCURY | |
| 285 subclass ORGANOMECURY -> ORGANOMERCURY | |
| 286 faeG CAE82650.1 | |
| 287 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG | |
| 288 faeG CAE82653.1 | |
| 289 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG | |
| 290 faeG CAE82670.1 | |
| 291 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG | |
| 292 mphL WP_002047670.1 | |
| 293 gene_family mph(B) -> mphL | |
| 294 product_name Mph(B) family macrolide 2'-phosphotransferase -> macrolide 2'-phosphotransferase MphL | |
| 295 poxtA WP_002415638.1 | |
| 296 genbank_cds_start 1856 -> 57639 | |
| 297 genbank_cds_stop 3484 -> 59267 | |
| 298 genbank_nucleotide_accession MF095097.1 -> MH746818.1 | |
| 299 mcr-3.22 WP_094308975.1 | |
| 300 refseq_nucleotide_accession NG_060581.1 -> NG_060581.2 | |
| 301 blaPDC-259 WP_109791193.1 | |
| 302 genbank_nucleotide_accession MH243333.1 -> MH243333.2 | |
| 303 refseq_nucleotide_accession NG_057591.1 -> NG_057591.2 | |
| 304 blaPDC-265 WP_109791199.1 | |
| 305 genbank_nucleotide_accession MH243339.1 -> MH243339.2 | |
| 306 refseq_nucleotide_accession NG_057597.1 -> NG_057597.2 | |
| 307 | |
| 308 - HMM library Changes: | |
| 309 Total: Added 6 | |
| 310 Total: Prev. Release 603 | |
| 311 Total: Removed 1 | |
| 312 Total: This Release 608 | |
| 313 HMM Removed: NF000274.2 PF04439 | |
| 314 HMM Added: NF007456.1 PRK10026.1 | |
| 315 HMM Added: NF033636.1 acid_shock_Asr | |
| 316 HMM Added: NF033877.0 arsB_Sta_pI258 | |
| 317 HMM Added: NF033895.1 blaCAM | |
| 318 HMM Added: NF033929.1 blaAXC | |
| 319 HMM Added: NF033933.0 fosA8 | |
| 320 | |
| 321 - Protein family changes: | |
| 322 Total: Added 47 | |
| 323 Total: Prev. Release 1454 | |
| 324 Total: Removed 1 | |
| 325 Total: This Release 1500 | |
| 326 Family Removed: - ubiq_IpaH3 | |
| 327 Family Added: - ACID | |
| 328 Family Added: - CDF_efflux | |
| 329 Family Added: - amvA | |
| 330 Family Added: NF033877.0 arsB_pI258 | |
| 331 Family Added: - arsB_pKW301 | |
| 332 Family Added: - arsB_pYV | |
| 333 Family Added: NF007456.1 arsC_gluta | |
| 334 Family Added: - arsR | |
| 335 Family Added: - arsR_K-12 | |
| 336 Family Added: - arsR_R46 | |
| 337 Family Added: - arsR_pI258 | |
| 338 Family Added: - arsR_pKW301 | |
| 339 Family Added: - arsR_pSX267 | |
| 340 Family Added: - arsR_pYV | |
| 341 Family Added: NF033636.1 asr | |
| 342 Family Added: NF033929.1 blaAXC | |
| 343 Family Added: NF033895.1 blaCAM | |
| 344 Family Added: - blaPFM | |
| 345 Family Added: - cif | |
| 346 Family Added: - copC_Psyr | |
| 347 Family Added: - dfrA29 | |
| 348 Family Added: - efa1 | |
| 349 Family Added: - erm(49) | |
| 350 Family Added: - espK | |
| 351 Family Added: - fieF | |
| 352 Family Added: NF033933.0 fosA8 | |
| 353 Family Added: - hlyA-alpha | |
| 354 Family Added: - icr-Mo | |
| 355 Family Added: - iha | |
| 356 Family Added: - ipaH1 | |
| 357 Family Added: - ipaH2 | |
| 358 Family Added: - ipaH3 | |
| 359 Family Added: - ipaH4 | |
| 360 Family Added: - ipaH5 | |
| 361 Family Added: - ipa_gen | |
| 362 Family Added: - kdeA | |
| 363 Family Added: - lmrC_abcf | |
| 364 Family Added: - mphH | |
| 365 Family Added: - mphK | |
| 366 Family Added: - mphL | |
| 367 Family Added: - mphM | |
| 368 Family Added: - mphN | |
| 369 Family Added: - pic_auto | |
| 370 Family Added: - sab | |
| 371 Family Added: - senB | |
| 372 Family Added: - stb | |
| 373 Family Added: - tet(56) | |
| 374 Family Changed: NF000274.2 ant6_gen updated to - ant6_gen | |
| 375 | |
| 376 --------------------------------------------------------------------- | |
| 377 Changes included in 2019-07-10.1 | |
| 378 --------------------------------------------------------------------- | |
| 379 | |
| 380 New alleles and sequences were added, a few product names were made more | |
| 381 specific as more phenotype information became available. Cleanup of the | |
| 382 database caused some families and HMMs not used by AMRFinderPlus to be removed. | |
| 383 | |
| 384 - Protein changes: | |
| 385 Total: Added 57 | |
| 386 Total: Prev. Release 5757 | |
| 387 Total: Removed 3 | |
| 388 Total: This Release 5811 | |
| 389 Protein Removed: WP_029728367.1 blaB BlaB_family_subclass_B1_metallo-beta-lactamase | |
| 390 Protein Removed: WP_063842622.1 blaB BlaB_family_subclass_B1_metallo-beta-lactamase | |
| 391 Protein Removed: WP_063842629.1 blaGOB GOB_family_subclass_B3_metallo-beta-lactamase | |
| 392 Protein Added: AAA21095.1 arsB_R773 arsenite_efflux_transporter_membrane_subunit_ArsB | |
| 393 Protein Added: ABQ18953.1 emrD3 multidrug_efflux_MFS_transporter_EmrD-3 | |
| 394 Protein Added: WP_000850833.1 emrD3 multidrug_efflux_MFS_transporter_EmrD-3 | |
| 395 Protein Added: WP_010446567.1 tet(B) tetracycline_efflux_MFS_transporter_Tet(B) | |
| 396 Protein Added: WP_039902635.1 blaOXA-134_like OXA-134_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-646 | |
| 397 Protein Added: WP_063116263.1 arsB_R773 arsenite_efflux_transporter_membrane_subunit_ArsB | |
| 398 Protein Added: WP_063844329.1 dfrA12 trimethoprim-resistant_dihydrofolate_reductase_DfrA12 | |
| 399 Protein Added: WP_063856066.1 tet(B) tetracycline_efflux_MFS_transporter_Tet(B) | |
| 400 Protein Added: WP_063856068.1 tet(B) tetracycline_efflux_MFS_transporter_Tet(B) | |
| 401 Protein Added: WP_070342370.1 dfrA7 trimethoprim-resistant_dihydrofolate_reductase_DfrA7 | |
| 402 Protein Added: WP_071593205.1 aadA1bt ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA1bt | |
| 403 Protein Added: WP_071593208.1 aadA1bt ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA1bt | |
| 404 Protein Added: WP_086264536.1 blaOXA-213_like OXA-213_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-832 | |
| 405 Protein Added: WP_094323230.1 mcr-2 phosphoethanolamine--lipid_A_transferase_MCR-2.3 | |
| 406 Protein Added: WP_110174956.1 blaTEM class_A_beta-lactamase_TEM-235 | |
| 407 Protein Added: WP_125052736.1 blaOXA-51_like OXA-51_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-834 | |
| 408 Protein Added: WP_129336087.1 mcr-1 phosphoethanolamine--lipid_A_transferase_MCR-1.19 | |
| 409 Protein Added: WP_135350920.1 blaGES class_A_beta-lactamase_GES-41 | |
| 410 Protein Added: WP_140423191.1 aac(6')-Ib AAC(6')-Ib_family_aminoglycoside_6'-N-acetyltransferase | |
| 411 Protein Added: WP_140423278.1 aadA1 ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA1 | |
| 412 Protein Added: WP_140423279.1 aadA2 ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA2 | |
| 413 Protein Added: WP_140423280.1 aadA2 ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA2 | |
| 414 Protein Added: WP_140423281.1 aadA2 ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA2 | |
| 415 Protein Added: WP_140423282.1 aadA5 ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA5 | |
| 416 Protein Added: WP_140423283.1 dfrA1 trimethoprim-resistant_dihydrofolate_reductase_DfrA1 | |
| 417 Protein Added: WP_140423284.1 dfrA12 trimethoprim-resistant_dihydrofolate_reductase_DfrA12 | |
| 418 Protein Added: WP_140423285.1 dfrA17 trimethoprim-resistant_dihydrofolate_reductase_DfrA17 | |
| 419 Protein Added: WP_140423286.1 dfrA17 trimethoprim-resistant_dihydrofolate_reductase_DfrA17 | |
| 420 Protein Added: WP_140423287.1 dfrA17 trimethoprim-resistant_dihydrofolate_reductase_DfrA17 | |
| 421 Protein Added: WP_140423305.1 blaADC class_C_beta-lactamase_ADC-195 | |
| 422 Protein Added: WP_140423306.1 blaB subclass_B1_metallo-beta-lactamase_BlaB-15 | |
| 423 Protein Added: WP_140423307.1 blaCMY class_C_beta-lactamase_CMY-164 | |
| 424 Protein Added: WP_140423308.1 blaFRI carbapenem-hydrolyzing_class_A_beta-lactamase_FRI-8 | |
| 425 Protein Added: WP_140423309.1 blaFRI carbapenem-hydrolyzing_class_A_beta-lactamase_FRI-9 | |
| 426 Protein Added: WP_140423310.1 blaIMI carbapenem-hydrolyzing_class_A_beta-lactamase_IMI-19 | |
| 427 Protein Added: WP_140423311.1 blaKPC carbapenem-hydrolyzing_class_A_beta-lactamase_KPC-44 | |
| 428 Protein Added: WP_140423312.1 blaOXA-211_like OXA-211_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-643 | |
| 429 Protein Added: WP_140423313.1 blaOXA-211_like OXA-211_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-644 | |
| 430 Protein Added: WP_140423314.1 blaOXA-211_like OXA-211_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-645 | |
| 431 Protein Added: WP_140423315.1 blaOXA-134_like OXA-134_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-647 | |
| 432 Protein Added: WP_140423316.1 blaOXA-134_like OXA-134_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-648 | |
| 433 Protein Added: WP_140423317.1 blaOXA-211_like OXA-211_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-650 | |
| 434 Protein Added: WP_140423318.1 blaOXA-143_like OXA-143_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-825 | |
| 435 Protein Added: WP_140423319.1 blaOXA-213_like OXA-213_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-826 | |
| 436 Protein Added: WP_140423320.1 blaOXA-10_like OXA-10_family_class_D_beta-lactamase_OXA-827 | |
| 437 Protein Added: WP_140423321.1 blaOXA-51_like OXA-51_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-828 | |
| 438 Protein Added: WP_140423322.1 blaOXA-51_like OXA-51_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-829 | |
| 439 Protein Added: WP_140423323.1 blaOXA-51_like OXA-51_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-831 | |
| 440 Protein Added: WP_140423324.1 blaOXA-48_like OXA-48_family_class_D_beta-lactamase_OXA-833 | |
| 441 Protein Added: WP_140423325.1 blaPDC class_C_beta-lactamase_PDC-333 | |
| 442 Protein Added: WP_140423326.1 blaPOM subclass_B3_metallo-beta-lactamase_POM-2 | |
| 443 Protein Added: WP_140423327.1 blaVIM subclass_B1_metallo-beta-lactamase_VIM-64 | |
| 444 Protein Added: WP_140423328.1 blaVIM subclass_B1_metallo-beta-lactamase_VIM-65 | |
| 445 Protein Added: WP_140423329.1 mcr-1 phosphoethanolamine--lipid_A_transferase_MCR-1.20 | |
| 446 Protein Added: WP_140423330.1 mcr-1 phosphoethanolamine--lipid_A_transferase_MCR-1.21 | |
| 447 Protein Added: WP_140423331.1 mcr-3 phosphoethanolamine--lipid_A_transferase_MCR-3.26 | |
| 448 Protein Added: WP_140423332.1 mcr-3 phosphoethanolamine--lipid_A_transferase_MCR-3.30 | |
| 449 Protein Modified: ACM67153.1 lamda-2 intimin_type_lambda updated to ACM67153.1 lambda-2 intimin_type_lambda | |
| 450 Protein Modified: WP_001100753.1 blaPER class_A_extended-spectrum_beta-lactamase_PER-1 updated to WP_001100753.1 blaPER inhibitor-resistant_class_A_extended-spectrum_beta-lactamase_PER-1 | |
| 451 Protein Modified: WP_002317273.1 vanR-B VanB-type_vancomycin_resistance_DNA-binding_response_regulator_VanR updated to WP_002317273.1 vanR-B VanB-type_vancomycin_resistance_response_regulator_transcription_factor_VanR | |
| 452 Protein Modified: WP_002368697.1 vanR-B VanB-type_vancomycin_resistance_DNA-binding_response_regulator_VanR updated to WP_002368697.1 vanR-B VanB-type_vancomycin_resistance_response_regulator_transcription_factor_VanR | |
| 453 Protein Modified: WP_032489743.1 vanR-B VanB-type_vancomycin_resistance_DNA-binding_response_regulator_VanR updated to WP_032489743.1 vanR-B VanB-type_vancomycin_resistance_response_regulator_transcription_factor_VanR | |
| 454 Protein Modified: WP_063856719.1 vanR-B VanB-type_vancomycin_resistance_DNA-binding_response_regulator_VanR updated to WP_063856719.1 vanR-B VanB-type_vancomycin_resistance_response_regulator_transcription_factor_VanR | |
| 455 Protein Modified: WP_063856723.1 vanR-B VanB-type_vancomycin_resistance_DNA-binding_response_regulator_VanR updated to WP_063856723.1 vanR-B VanB-type_vancomycin_resistance_response_regulator_transcription_factor_VanR | |
| 456 Protein Modified: WP_063856729.1 vanR-O VanO-type_vancomycin_resistance_DNA-binding_response_regulator_VanR updated to WP_063856729.1 vanR-O VanO-type_vancomycin_resistance_response_regulator_transcription_factor_VanR | |
| 457 Protein Modified: WP_063860636.1 blaKPC carbapenem-hydrolyzing_class_A_beta-lactamase_KPC-14 updated to WP_063860636.1 blaKPC inhibitor-resistant_class_A_extended-spectrum_beta-lactamase_KPC-14 | |
| 458 - AMR HMM library Changes: | |
| 459 Total: Added 5 | |
| 460 Total: Prev. Release 610 | |
| 461 Total: Removed 12 | |
| 462 Total: This Release 603 | |
| 463 HMM Removed: NF000252.1 MexX | |
| 464 HMM Removed: NF000282.2 RND_permease_1 | |
| 465 HMM Removed: NF000314.1 adeB | |
| 466 HMM Removed: NF000315.1 adeC-adeK-oprM | |
| 467 HMM Removed: NF007842.1 PRK10555.1 | |
| 468 HMM Removed: NF011706.2 PRK15127.1 | |
| 469 HMM Removed: NF028537.1 P_eth_NH2_trans | |
| 470 HMM Removed: NF033086.2 penta_rpt_Qnr | |
| 471 HMM Removed: NF033134.0 cmlA_floR | |
| 472 HMM Removed: NF033143.1 efflux_OM_AdeK | |
| 473 HMM Removed: NF033643.1 EspJ_gen | |
| 474 HMM Removed: NF033651.1 cyto_nec_fctrs | |
| 475 HMM Added: NF000478.2 linco_LnuE | |
| 476 HMM Added: NF012180.1 tet_MFS_43 | |
| 477 HMM Added: NF033866.1 blaCDD | |
| 478 HMM Added: NF033867.1 blaPAU | |
| 479 HMM Added: NF033868.0 trim_DfrA36 | |
| 480 - Protein family changes: | |
| 481 Total: Added 11 | |
| 482 Total: Prev. Release 1449 | |
| 483 Total: Removed 6 | |
| 484 Total: This Release 1454 | |
| 485 Family Removed: NF011706.2 acrB | |
| 486 Family Removed: NF007842.1 acrD | |
| 487 Family Removed: NF000314.1 adeB/adeJ | |
| 488 Family Removed: NF033143.1 adeK | |
| 489 Family Removed: - lamda | |
| 490 Family Removed: - lamda-2 | |
| 491 Family Added: - aadA1bt | |
| 492 Family Added: - arsB | |
| 493 Family Added: - arsB_R773 | |
| 494 Family Added: NF033866.1 blaCDD | |
| 495 Family Added: NF033867.1 blaPAU | |
| 496 Family Added: NF033868.0 dfrA36 | |
| 497 Family Added: - emrD3 | |
| 498 Family Added: - lambda | |
| 499 Family Added: - lambda-2 | |
| 500 Family Added: NF000478.2 lnu(E) | |
| 501 Family Added: NF012180.1 tet(43) | |
| 502 Family Changed: NF030466.1 MerP_Gneg updated to TIGR02052.1 MerP_Gneg | |
| 503 Family Changed: NF030467.1 merA updated to TIGR02053.1 merA | |
| 504 | |
| 505 | |
| 506 --------------------------------------------------------------------- | |
| 507 Changes included in 2019-06-18.1 | |
| 508 --------------------------------------------------------------------- | |
| 509 | |
| 510 This the first alpha release of the AMRFinderPlus database. For this and all | |
| 511 following releases there is a distinction between "core" proteins which | |
| 512 correspond to the genes that would previously have been reported by AMRFinder | |
| 513 and "plus" proteins that are new genes and classes of genes. The "core" | |
| 514 designation is given to proteins where we believe their presence is likely to | |
| 515 have an important effect on antimicrobial resistance. | |
| 516 | |
| 517 * Screen for select point mutations for antibiotic resistance from Salmonella, | |
| 518 E. coli, and Campylobacter | |
| 519 * Protein mutations in: 50S_L22 protein, acrB, acrR, basR, cmeR, cyaA, | |
| 520 fabG, fabI, folP, gyrA, gyrB, lon, marR, murA, nfsA, ompF, parC, parE, | |
| 521 pmrA, pmrB, ptsI, ramR, rpoB, rpsL, soxR, soxS, tufA, uhpA, uhpT | |
| 522 * Nucleotide mutations in 16S and 23S rRNA | |
| 523 * Included point mutations are listed in the reference gene database | |
| 524 (https://www.ncbi.nlm.nih.gov/pathogens/isolates#/refgene/) | |
| 525 * New "Plus" genes | |
| 526 * virulence factors | |
| 527 * biocide resistance | |
| 528 * metal resistance | |
| 529 * heat resistance | |
| 530 * acid resistance | |
| 531 * Combined and integrated results from nucleotide and protein searches | |
| 532 | |
| 533 File formats have changed significantly. See https://github.com/evolarjun/amr/wiki | |
| 534 for details. | |
| 535 | |
| 536 Since release 2019-04-29.1 only one change has been made to the core AMR | |
| 537 proteins. Qac's are now categorized under Type STRESS and Subtype BIOCIDE. | |
| 538 | |
| 539 - Protein changes: | |
| 540 Prev. Release: 4942 | |
| 541 This Release: 5718 | |
| 542 Added: 776 | |
| 543 Modified: 0 | |
| 544 | |
| 545 Protein Added: ABF69110.1 eae intimin type beta | |
| 546 Protein Added: ABF69117.1 eae intimin type epsilon | |
| 547 Protein Added: ABF69121.1 eae intimin type epsilon | |
| 548 Protein Added: ABF69122.1 eae intimin type alpha | |
| 549 Protein Added: KYU89760.1 subB subtilase AB5 cytotoxin subunit B | |
| 550 Protein Added: AAG16664.1 perA BFP system transcriptional regulator PerA | |
| 551 Protein Added: AAG16667.1 perA BFP system transcriptional regulator PerA | |
| 552 Protein Added: AAG16676.1 perA BFP system transcriptional regulator PerA | |
| 553 Protein Added: AAB09625.1 arsD arsenite efflux transporter metallochaperone ArsD | |
| 554 Protein Added: AAB09626.1 arsA arsenite efflux transporter ATPase subunit ArsA | |
| 555 Protein Added: CAJ76690.1 stx1Aa Shiga toxin Stx1a subunit A | |
| 556 Protein Added: CAJ76692.1 stx1Aa Shiga toxin Stx1a subunit A | |
| 557 Protein Added: AAA98291.1 terC tellurium resistance membrane protein TerC | |
| 558 Protein Added: AAA98293.1 terE tellurium resistance cAMP binding protein TerE | |
| 559 Protein Added: AAG27731.1 norM sodium-coupled multidrug efflux MATE transporter NorM | |
| 560 Protein Added: ABF02983.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8 | |
| 561 Protein Added: ABF04028.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8 | |
| 562 Protein Added: BAE98279.1 bfpA bundle-forming pilus major subunit BfpA | |
| 563 Protein Added: BAE98281.1 bfpA bundle-forming pilus major subunit BfpA | |
| 564 Protein Added: CAC14596.1 smeF multidrug efflux RND transporter outer membrane subunit SmeF | |
| 565 Protein Added: AAA83973.1 merR1 mercury resistance transcriptional regulator MerR1 | |
| 566 Protein Added: AAA83975.1 merT mercuric transport protein MerT | |
| 567 Protein Added: AAA98292.1 terD tellurium resistance membrane protein TerD | |
| 568 Protein Added: AAG34504.1 perA BFP system transcriptional regulator PerA | |
| 569 Protein Added: APX31172.1 yfdX1 heat resistance protein YfdX1 | |
| 570 Protein Added: APX31174.1 hdeD-GI heat resistance membrane protein HdeD-GI | |
| 571 Protein Added: APX31176.1 trxLHR heat resistance system thioredoxin Trx-GI | |
| 572 Protein Added: APX31177.1 kefB-GI heat resistance system K+/H+ antiporter KefB-GI | |
| 573 Protein Added: APX31178.1 psi-GI heat resistance protein PsiE-GI | |
| 574 Protein Added: AAA85087.1 f17a F17A fimbrial adhesin | |
| 575 Protein Added: AAA85196.1 cnf1 cytotoxic necrotizing factor CNF1 | |
| 576 Protein Added: AAG37043.1 espC serine protease autotransporter toxin EspC | |
| 577 Protein Added: ABI93207.1 fedF F18 fimbrial adhesin subunit FedF | |
| 578 Protein Added: BAF33872.1 capU putative hexosyltransferase CapU | |
| 579 Protein Added: BAF33878.1 aggR aggregative adherence transcriptional regulator AggR | |
| 580 Protein Added: BAF33885.1 sepA serine protease autotransporter toxin SepA | |
| 581 Protein Added: BAF33888.1 agg4D aggregative adherence fimbria 4 chaperone Agg4D/HdaD | |
| 582 Protein Added: BAF33891.1 agg4A aggregative adherence fimbria 4 major subunit Agg4A/HdaA | |
| 583 Protein Added: BAF33901.1 aatA dispersin export ABC transporter outer membrane protein AatA | |
| 584 Protein Added: BAF34018.1 aap dispersin Aap | |
| 585 Protein Added: ABJ00546.1 iss increased serum survival lipoprotein Iss | |
| 586 Protein Added: ABJ02430.1 ireA TonB-dependent siderophore receptor IreA | |
| 587 Protein Added: OPH66324.1 lpfA1 long polar fimbria major subunit LpfA1 | |
| 588 Protein Added: ABJ90288.1 fedF F18 fimbrial adhesin subunit FedF | |
| 589 Protein Added: AAA86846.1 terZ tellurium resistance-associated protein TerZ | |
| 590 Protein Added: ABC67318.2 stx2Aa Shiga toxin Stx2a subunit A | |
| 591 Protein Added: AAG40758.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 592 Protein Added: AAA88371.1 merE broad-spectrum mercury transporter MerE | |
| 593 Protein Added: AAG42788.1 perA BFP system transcriptional regulator PerA | |
| 594 Protein Added: ASF80766.1 yfdX2 heat resistance protein YfdX2 | |
| 595 Protein Added: ASF80771.1 shsP small heat shock protein sHSP20-GI | |
| 596 Protein Added: CAM11313.1 nleA type III secretion system effector NleA | |
| 597 Protein Added: CAM11314.1 nleA type III secretion system effector NleA | |
| 598 Protein Added: CAM11315.1 nleA type III secretion system effector NleA | |
| 599 Protein Added: CAM11317.1 nleA type III secretion system effector NleA | |
| 600 Protein Added: CAM11321.1 nleA type III secretion system effector NleA | |
| 601 Protein Added: CAM11323.1 nleA type III secretion system effector NleA | |
| 602 Protein Added: CAM11324.1 nleA type III secretion system effector NleA | |
| 603 Protein Added: CAM11325.1 nleA type III secretion system effector NleA | |
| 604 Protein Added: AAA92618.1 f17a F17A fimbrial adhesin | |
| 605 Protein Added: AAA92621.1 f17g F17G fimbrial adhesin | |
| 606 Protein Added: AAA93060.1 arsD arsenite efflux transporter metallochaperone ArsD | |
| 607 Protein Added: AAG53662.1 perA BFP system transcriptional regulator PerA | |
| 608 Protein Added: BAF45432.1 tccP Tir-cytoskeleton coupling protein TccP | |
| 609 Protein Added: BAF45437.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 610 Protein Added: BAF45439.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 611 Protein Added: BAF45440.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 612 Protein Added: BAF45447.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 613 Protein Added: BAF45451.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 614 Protein Added: BAF45459.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 615 Protein Added: ABM90581.1 perA BFP system transcriptional regulator PerA | |
| 616 Protein Added: ABM90583.1 perA BFP system transcriptional regulator PerA | |
| 617 Protein Added: ABM90587.1 perA BFP system transcriptional regulator PerA | |
| 618 Protein Added: ABM90589.1 perA BFP system transcriptional regulator PerA | |
| 619 Protein Added: ABM90597.1 perA BFP system transcriptional regulator PerA | |
| 620 Protein Added: ABM90605.1 perA BFP system transcriptional regulator PerA | |
| 621 Protein Added: ABM90615.1 perA BFP system transcriptional regulator PerA | |
| 622 Protein Added: AAC46147.1 yfeA iron/manganese ABC transporter substrate-binding protein YfeA | |
| 623 Protein Added: AAC46148.1 yfeB iron/manganese ABC transporter ATP-binding protein YfeB | |
| 624 Protein Added: AAC46150.1 yfeD iron/manganese ABC transporter permease subunit YfeD | |
| 625 Protein Added: ATE69525.1 acr3 arsenite efflux transporter Acr3 | |
| 626 Protein Added: AAG55141.1 nleC type III secretion system effector zinc metalloprotease NleC | |
| 627 Protein Added: AAG56990.1 espJ type III secretion system effector ADP-ribosyltransferase EspJ | |
| 628 Protein Added: AAG58695.1 lpfA1 long polar fimbria major subunit LpfA1 | |
| 629 Protein Added: AAG58814.1 espF type III secretion system LEE effector EspF | |
| 630 Protein Added: AAG58818.1 espB type III secretion system LEE translocon pore-forming subunit EspB | |
| 631 Protein Added: AAG58825.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 632 Protein Added: AAK15050.1 ttgR efflux transport transcriptional regulator TtgR | |
| 633 Protein Added: AAK16940.1 nleA type III secretion system effector NleA | |
| 634 Protein Added: AAK17180.1 nfaE Dr family non-fimbrial adhesin I chaperone NfaE | |
| 635 Protein Added: AAK18385.1 sepA serine protease autotransporter toxin SepA | |
| 636 Protein Added: AAK18444.1 ipaD type III secretion system needle tip complex protein IpaD | |
| 637 Protein Added: BAB37280.1 nleB type III secretion system effector arginine glycosyltransferase NleB | |
| 638 Protein Added: BAB38093.1 lpfA2 long polar fimbria major subunit LpfA2 | |
| 639 Protein Added: AAC44736.1 terW tellurium resistance protein TerW | |
| 640 Protein Added: AVL28824.1 aar AggR-activated transcriptional regulator Aar | |
| 641 Protein Added: SPD96882.1 silS copper/silver sensor histidine kinase SilS | |
| 642 Protein Added: SPD96883.1 silR copper/silver response regulator transcription factor SilR | |
| 643 Protein Added: SPD96884.1 silC Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC | |
| 644 Protein Added: CAA57177.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 645 Protein Added: CAA57175.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 646 Protein Added: CAA57173.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 647 Protein Added: CAA57171.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 648 Protein Added: BAB43874.1 cadD cadmium resistance transporter CadD | |
| 649 Protein Added: AAK48830.1 cadR cadmium resistance transcriptional regulator CadR | |
| 650 Protein Added: BAF52034.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 651 Protein Added: BAF52035.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 652 Protein Added: BAF52033.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 653 Protein Added: BAF52358.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 654 Protein Added: BAF52360.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 655 Protein Added: BAF52362.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 656 Protein Added: BAF52363.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 657 Protein Added: BAF52364.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 658 Protein Added: BAF52365.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 659 Protein Added: BAF52366.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 660 Protein Added: BAF52367.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 661 Protein Added: BAF52370.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 662 Protein Added: BAF52374.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 663 Protein Added: BAF52377.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 664 Protein Added: BAF52548.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 665 Protein Added: BAF52549.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 666 Protein Added: BAB47641.1 merB organomercurial lyase MerB | |
| 667 Protein Added: AAK56853.1 chrR class I chromate reductase ChrR | |
| 668 Protein Added: CAC39286.1 espI serine protease autotransporter EspI | |
| 669 Protein Added: AAA83977.1 merA mercury(II) reductase | |
| 670 Protein Added: AAA23405.1 fasA F6 fimbrial major subunit FasA | |
| 671 Protein Added: AAA23421.1 fim41a fimbrial adhesin F41 protein Fim41a | |
| 672 Protein Added: AAK66972.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 673 Protein Added: AAC41416.1 cfaC CFA/I pilus usher protein CfaC | |
| 674 Protein Added: CAB54534.2 mchB microcin H47 | |
| 675 Protein Added: AAK69562.1 srpS solvent efflux transporter transcriptional repressor SrpS | |
| 676 Protein Added: AAA23734.1 fedA F18 fimbrial major subunit FedA | |
| 677 Protein Added: ABQ02454.1 eae intimin type rho | |
| 678 Protein Added: AAA24032.1 faeG F4 fimbrial adhesin subunit FaeG | |
| 679 Protein Added: AAA24035.1 faeG F4 fimbrial adhesin subunit FaeG | |
| 680 Protein Added: AAA24390.1 faeG F4 fimbrial adhesin subunit FaeG | |
| 681 Protein Added: AXV27948.1 agg3C aggregative adherence fimbria 3 usher protein Agg3C | |
| 682 Protein Added: AAA19189.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 683 Protein Added: AAA19190.1 stx2Be Shiga toxin Stx2e subunit B | |
| 684 Protein Added: AAA24632.1 stx2Af Shiga toxin Stx2f subunit A | |
| 685 Protein Added: AAA24633.1 stx2Bf Shiga toxin Stx2f subunit B | |
| 686 Protein Added: AAA71893.1 stx1Aa Shiga toxin Stx1a subunit A | |
| 687 Protein Added: AAA71894.1 stx1Ba Shiga toxin Stx1a subunit B | |
| 688 Protein Added: AAA24653.1 sta1 heat-stable enterotoxin ST-I group a | |
| 689 Protein Added: ABR09925.1 stx2Ba Shiga toxin Stx2a subunit B | |
| 690 Protein Added: ABR09934.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 691 Protein Added: ABR09935.1 stx2Bc Shiga toxin Stx2c subunit B | |
| 692 Protein Added: ABR09936.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 693 Protein Added: ABR09937.1 stx2Bd Shiga toxin Stx2d subunit B | |
| 694 Protein Added: ABR09945.1 stx2Ba Shiga toxin Stx2a subunit B | |
| 695 Protein Added: ABR09961.1 stx2Ba Shiga toxin Stx2a subunit B | |
| 696 Protein Added: ABR09963.1 stx2Ba Shiga toxin Stx2a subunit B | |
| 697 Protein Added: ABR10024.1 stx2Ab Shiga toxin Stx2b subunit A | |
| 698 Protein Added: CAA30714.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 699 Protein Added: CAA30715.1 stx2Ba Shiga toxin Stx2a subunit B | |
| 700 Protein Added: AAB59075.1 merT mercuric transport protein MerT | |
| 701 Protein Added: AAA88369.1 merB organomercurial lyase MerB | |
| 702 Protein Added: AAA88370.1 merD mercury resistance co-regulator MerD | |
| 703 Protein Added: AAA98222.1 merT mercuric transport protein MerT | |
| 704 Protein Added: AAA98223.1 merP mercury resistance system periplasmic binding protein MerP | |
| 705 Protein Added: AAA25638.1 arsC thioredoxin-dependent arsenate reductase | |
| 706 Protein Added: AAA88432.1 chrA chromate resistance efflux protein ChrA | |
| 707 Protein Added: AAA25803.1 copR heavy metal response regulator transcription factor CopR | |
| 708 Protein Added: AAA25804.1 copS copper resistance membrane spanning protein CopS | |
| 709 Protein Added: AAA25806.1 copA laccase-like oxidase CopA | |
| 710 Protein Added: AAA25807.1 copB copper-binding protein CopB | |
| 711 Protein Added: CAC48396.1 stx2Ab Shiga toxin Stx2b subunit A | |
| 712 Protein Added: CAC48398.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 713 Protein Added: AAA21094.1 arsA arsenite efflux transporter ATPase subunit ArsA | |
| 714 Protein Added: BAB62897.1 cofA type IV pilus CFA/III major pilin | |
| 715 Protein Added: BAB62907.1 cofA type IV pilus CFA/III major pilin | |
| 716 Protein Added: CAA63849.1 ehxA enterohemolysin | |
| 717 Protein Added: AAA26402.1 klaB tellurium resistance system protein klaB | |
| 718 Protein Added: AAA26403.1 klaC tellurium resistance system protein klaC | |
| 719 Protein Added: AAK97136.1 cfaC CFA/I pilus usher protein CfaC | |
| 720 Protein Added: AAK99679.1 pmrA multidrug efflux MFS transporter PmrA | |
| 721 Protein Added: CAC69248.1 merR mercury resistance transcriptional regulator MerR | |
| 722 Protein Added: CAC69249.1 merT mercuric transport protein MerT | |
| 723 Protein Added: CAC69250.1 merP mercury resistance system periplasmic binding protein MerP | |
| 724 Protein Added: CAC69251.1 merA mercury(II) reductase | |
| 725 Protein Added: BAB64566.1 bexA multidrug efflux MATE transporter BexA | |
| 726 Protein Added: AAA27589.1 arsC thioredoxin-dependent arsenate reductase | |
| 727 Protein Added: ABU55302.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 728 Protein Added: BAF76383.1 ttgA toluene efflux RND transporter periplasmic adaptor subunit TtgA | |
| 729 Protein Added: BAF76384.1 ttgB multidrug efflux RND transporter permease subunit TtgB | |
| 730 Protein Added: ABV01314.1 ltcA heat-labile enterotoxin LT subunit A | |
| 731 Protein Added: BAF79679.1 smdA multidrug efflux ABC transporter permease/ATP-binding subunit SmdA | |
| 732 Protein Added: BAF79680.1 smdB multidrug efflux ABC transporter permease/ATP-binding subunit SmdB | |
| 733 Protein Added: ABV16438.1 eatA serine protease autotransporter toxin EatA | |
| 734 Protein Added: BAB68369.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 735 Protein Added: BAB68370.1 stx2Bc Shiga toxin Stx2c subunit B | |
| 736 Protein Added: BAF80121.1 ssmE multidrug efflux SMR transporter SsmE | |
| 737 Protein Added: AAL06376.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 738 Protein Added: AAL06381.1 espA type III secretion system LEE translocon filament protein EspA | |
| 739 Protein Added: AAL06387.1 espF type III secretion system LEE effector EspF | |
| 740 Protein Added: AAC23256.1 hmrM sodium-coupled multidrug efflux MATE transporter HmrM | |
| 741 Protein Added: ABQ02442.1 ehxA enterohemolysin | |
| 742 Protein Added: ABQ02443.1 ehxA enterohemolysin | |
| 743 Protein Added: ABQ02445.1 ehxA enterohemolysin | |
| 744 Protein Added: ABQ02447.1 ehxA enterohemolysin | |
| 745 Protein Added: ABQ02448.1 ehxA enterohemolysin | |
| 746 Protein Added: AAL08400.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF | |
| 747 Protein Added: BAF92845.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 748 Protein Added: AAL14441.1 adeC multidrug efflux RND transporter AdeABC outer membrane channel subunit AdeC | |
| 749 Protein Added: CAP17609.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 750 Protein Added: CAP17610.1 stx2Be Shiga toxin Stx2e subunit B | |
| 751 Protein Added: AAL18821.1 epeA serine protease autotransporter EpeA | |
| 752 Protein Added: AAL19305.1 mdsB multidrug efflux RND transporter permease subunit MdsB | |
| 753 Protein Added: AAL19306.1 mdsA multidrug efflux RND transporter periplasmic adaptor subunit MdsA | |
| 754 Protein Added: AAL19307.1 golT gold/copper-translocating P-type ATPase GolT | |
| 755 Protein Added: AAL19308.1 golS Au(I) sensor transcriptional regulator GolS | |
| 756 Protein Added: BAF96525.1 espJ type III secretion system effector ADP-ribosyltransferase EspJ | |
| 757 Protein Added: BAF96538.1 nleB2 type III secretion system effector arginine glycosyltransferase NleB2 | |
| 758 Protein Added: BAF96541.1 nleA type III secretion system effector NleA | |
| 759 Protein Added: BAA18405.1 acr3 arsenite efflux transporter Acr3 | |
| 760 Protein Added: BAA18407.1 arsC thioredoxin-dependent arsenate reductase | |
| 761 Protein Added: AAL26283.1 saa autoagglutinating adhesin Saa | |
| 762 Protein Added: CAA65654.1 espB type III secretion system LEE translocon pore-forming subunit EspB | |
| 763 Protein Added: AAC45964.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 764 Protein Added: AAC45965.1 stx2Be Shiga toxin Stx2e subunit B | |
| 765 Protein Added: ACA34793.1 tsh temperature-sensitive protease autotransporter hemagglutinin Tsh | |
| 766 Protein Added: BAG11995.1 tccP Tir-cytoskeleton coupling protein TccP | |
| 767 Protein Added: BAG11997.1 tccP Tir-cytoskeleton coupling protein TccP | |
| 768 Protein Added: BAG12001.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 769 Protein Added: ACB16424.1 lpfA long polar fimbria major subunit LpfA-O113 | |
| 770 Protein Added: ACB16655.1 eilA HilA family transcriptional regulator EilA | |
| 771 Protein Added: ACB17037.1 air inverse autotransporter adhesin EaeX/Air | |
| 772 Protein Added: CAA70196.1 merT mercuric transport protein MerT | |
| 773 Protein Added: ACB72721.1 faeG F4 fimbrial adhesin subunit FaeG | |
| 774 Protein Added: AAC44731.1 espC serine protease autotransporter toxin EspC | |
| 775 Protein Added: AAC74250.1 ymgB biofilm/acid-resistance regulator AriR | |
| 776 Protein Added: AAC76298.1 acrF multidrug efflux RND transporter permease subunit AcrF | |
| 777 Protein Added: AAC77293.1 mdtM multidrug efflux MFS transporter MdtM | |
| 778 Protein Added: AAL57565.1 nleB type III secretion system effector arginine glycosyltransferase NleB | |
| 779 Protein Added: BAB82994.1 stx2Ab Shiga toxin Stx2b subunit A | |
| 780 Protein Added: BAB82996.1 stx2Ab Shiga toxin Stx2b subunit A | |
| 781 Protein Added: BAB82998.1 stx2Ab Shiga toxin Stx2b subunit A | |
| 782 Protein Added: BAB83000.1 stx2Ab Shiga toxin Stx2b subunit A | |
| 783 Protein Added: BAB83002.1 stx2Ag Shiga toxin Stx2g subunit A | |
| 784 Protein Added: BAB83003.1 stx2Bg Shiga toxin Stx2g subunit B | |
| 785 Protein Added: BAB83005.1 stx2Bb Shiga toxin Stx2b subunit B | |
| 786 Protein Added: BAB83007.1 stx2Bb Shiga toxin Stx2b subunit B | |
| 787 Protein Added: BAB83020.1 stx2Ag Shiga toxin Stx2g subunit A | |
| 788 Protein Added: BAB83022.1 stx1Ac Shiga toxin Stx1c subunit A | |
| 789 Protein Added: BAB83023.1 stx1Bc Shiga toxin Stx1c subunit B | |
| 790 Protein Added: BAB83024.1 stx2Ab Shiga toxin Stx2b subunit A | |
| 791 Protein Added: AAL72309.1 sepA serine protease autotransporter toxin SepA | |
| 792 Protein Added: AAL72350.1 ipaD type III secretion system needle tip complex protein IpaD | |
| 793 Protein Added: AAL05407.1 tcrB copper-translocating P-type ATPase TcrB | |
| 794 Protein Added: ACD06066.1 capU putative hexosyltransferase CapU | |
| 795 Protein Added: ACD06132.1 ipaD type III secretion system needle tip complex protein IpaD | |
| 796 Protein Added: ACD07996.1 ipaH3 T3SS effector E3 ubiquitin-protein ligase IpaH3 | |
| 797 Protein Added: ACD09076.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8 | |
| 798 Protein Added: BAA11821.1 chrR class I chromate reductase ChrR | |
| 799 Protein Added: CAQ45062.1 emrC multidrug efflux transporter outer membrane subunit EmrC | |
| 800 Protein Added: CAQ45063.1 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | |
| 801 Protein Added: CAQ45064.1 emrB multidrug efflux MFS transporter permease subunit EmrB | |
| 802 Protein Added: ACF05260.1 agg4A aggregative adherence fimbria 4 major subunit Agg4A/HdaA | |
| 803 Protein Added: ACF30254.1 mtrR multidrug efflux system transcriptional repressor MtrR | |
| 804 Protein Added: ACF30256.1 mtrF AbgT family antimetabolite efflux transporter MtrF | |
| 805 Protein Added: BAG66379.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 806 Protein Added: BAG66729.1 espB type III secretion system LEE translocon pore-forming subunit EspB | |
| 807 Protein Added: BAG66736.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 808 Protein Added: ACG59623.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 809 Protein Added: ACG59674.1 espB type III secretion system LEE translocon pore-forming subunit EspB | |
| 810 Protein Added: ACG59676.1 espA type III secretion system LEE translocon filament protein EspA | |
| 811 Protein Added: ACG59681.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 812 Protein Added: ACG59730.1 espB type III secretion system LEE translocon pore-forming subunit EspB | |
| 813 Protein Added: ACG59732.1 espA type III secretion system LEE translocon filament protein EspA | |
| 814 Protein Added: ACG59737.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 815 Protein Added: ACG76368.1 arsP organoarsenical efflux permease ArsP | |
| 816 Protein Added: ACI12150.1 terB tellurium resistance membrane protein TerB | |
| 817 Protein Added: BAG76115.1 iss increased serum survival lipoprotein Iss | |
| 818 Protein Added: AAA98099.1 stx1Aa Shiga toxin Stx1a subunit A | |
| 819 Protein Added: CAS08589.1 nleB2 type III secretion system effector arginine glycosyltransferase NleB2 | |
| 820 Protein Added: CAS08990.1 nleA type III secretion system effector NleA | |
| 821 Protein Added: CAS10463.1 espC serine protease autotransporter toxin EspC | |
| 822 Protein Added: CAS06720.1 eae intimin type gamma | |
| 823 Protein Added: CAS06721.1 eae intimin type alpha | |
| 824 Protein Added: CAS06723.1 eae intimin type alpha | |
| 825 Protein Added: BAA20334.1 merR mercury resistance transcriptional regulator MerR | |
| 826 Protein Added: BAA20336.1 merP mercury resistance system periplasmic binding protein MerP | |
| 827 Protein Added: BAA20337.1 merA mercury(II) reductase | |
| 828 Protein Added: AAM70045.1 stx2Aa Shiga toxin Stx2a subunit A | |
| 829 Protein Added: CAQ87187.1 iroN siderophore salmochelin receptor IroN | |
| 830 Protein Added: CAV00478.1 lpfA long polar fimbria major subunit LpfA | |
| 831 Protein Added: CAV00812.1 lpfA long polar fimbria major subunit LpfA-O113 | |
| 832 Protein Added: CAV02025.1 capU putative hexosyltransferase CapU | |
| 833 Protein Added: CAQ90194.1 iss increased serum survival lipoprotein Iss | |
| 834 Protein Added: CAU95796.1 aatA dispersin export ABC transporter outer membrane protein AatA | |
| 835 Protein Added: CAU95824.1 agg3D aggregative adherence fimbria 3 chaperone Agg3D | |
| 836 Protein Added: CAQ97644.1 iss increased serum survival lipoprotein Iss | |
| 837 Protein Added: CAR01635.1 vactox vacuolating autotransporter toxin Vat | |
| 838 Protein Added: CAR09703.2 ireA TonB-dependent siderophore receptor IreA | |
| 839 Protein Added: CAR12622.1 iss increased serum survival lipoprotein Iss | |
| 840 Protein Added: CAR15326.1 air inverse autotransporter adhesin EaeX/Air | |
| 841 Protein Added: CAW30811.1 nfaE Dr family non-fimbrial adhesin I chaperone NfaE | |
| 842 Protein Added: CAW30815.1 nfaE Dr family non-fimbrial adhesin I chaperone NfaE | |
| 843 Protein Added: ACL13561.1 copR heavy metal response regulator transcription factor CopR | |
| 844 Protein Added: ACL13562.1 copS copper resistance membrane spanning protein CopS | |
| 845 Protein Added: ACL51961.1 ehxA enterohemolysin | |
| 846 Protein Added: ACL51990.1 toxB toxin B | |
| 847 Protein Added: AAM88296.1 agg3C aggregative adherence fimbria 3 usher protein Agg3C | |
| 848 Protein Added: AAM88297.1 agg3B aggregative adherence fimbria 3 minor subunit Agg3B | |
| 849 Protein Added: AAM88298.1 agg3A aggregative adherence fimbria 3 major subunit Agg3A | |
| 850 Protein Added: AAM88299.1 astA heat-stable enterotoxin EAST1 | |
| 851 Protein Added: AAM88302.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 852 Protein Added: BAA14138.2 merC organomercurial transporter MerC | |
| 853 Protein Added: AAM88668.1 cueA copper resistance metal-translocating P1-type ATPase CueA | |
| 854 Protein Added: AAM90978.1 stx2Ba Shiga toxin Stx2a subunit B | |
| 855 Protein Added: CAX18553.1 nleB type III secretion system effector arginine glycosyltransferase NleB | |
| 856 Protein Added: CAX18626.1 nleB type III secretion system effector arginine glycosyltransferase NleB | |
| 857 Protein Added: CAX18635.1 espF type III secretion system LEE effector EspF | |
| 858 Protein Added: CAX18641.1 espA type III secretion system LEE translocon filament protein EspA | |
| 859 Protein Added: CAX18646.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 860 Protein Added: CAX18721.1 espA type III secretion system LEE translocon filament protein EspA | |
| 861 Protein Added: CAX18726.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 862 Protein Added: ACM67143.1 eae intimin type alpha | |
| 863 Protein Added: ACM67145.1 eae intimin type iota | |
| 864 Protein Added: ACM67146.1 eae intimin type alpha | |
| 865 Protein Added: ACM67148.1 eae intimin type gamma | |
| 866 Protein Added: ACM67149.1 eae intimin type gamma | |
| 867 Protein Added: ACM67152.1 eae intimin type beta | |
| 868 Protein Added: ACM67153.1 eae intimin type lambda | |
| 869 Protein Added: ACM67154.1 eae intimin type gamma | |
| 870 Protein Added: ACM67155.1 eae intimin type epsilon | |
| 871 Protein Added: ACM67156.1 eae intimin type epsilon | |
| 872 Protein Added: ACM67157.1 eae intimin type beta | |
| 873 Protein Added: ACM67158.1 eae intimin type epsilon | |
| 874 Protein Added: ACM67160.1 eae intimin type beta | |
| 875 Protein Added: ACM67161.1 eae intimin type beta | |
| 876 Protein Added: ACM67162.1 eae intimin type gamma | |
| 877 Protein Added: ACM67163.1 eae intimin type rho | |
| 878 Protein Added: ACM67164.1 eae intimin type gamma | |
| 879 Protein Added: ACM67165.1 eae intimin type gamma | |
| 880 Protein Added: ACM67166.1 eae intimin type gamma | |
| 881 Protein Added: ACM67167.1 eae intimin type epsilon | |
| 882 Protein Added: ACM67168.1 eae intimin type alpha | |
| 883 Protein Added: ACM67169.1 eae intimin type gamma | |
| 884 Protein Added: ACM67172.1 eae intimin type epsilon | |
| 885 Protein Added: ACM67177.1 eae intimin type gamma | |
| 886 Protein Added: ACM67178.1 eae intimin type epsilon | |
| 887 Protein Added: BAH24012.1 toxB toxin B | |
| 888 Protein Added: CAB14520.2 acr3 arsenite efflux transporter Acr3 | |
| 889 Protein Added: ACO06752.1 emhB efflux RND transporter permease subunit EmhB | |
| 890 Protein Added: AAN03785.1 cnf1 cytotoxic necrotizing factor CNF1 | |
| 891 Protein Added: AAN03786.1 cnf1 cytotoxic necrotizing factor CNF1 | |
| 892 Protein Added: AAN04250.1 dpsA non-specific DNA-binding protein DpsA | |
| 893 Protein Added: BAC10987.1 stx1Ac Shiga toxin Stx1c subunit A | |
| 894 Protein Added: BAC10988.1 stx1Bc Shiga toxin Stx1c subunit B | |
| 895 Protein Added: BAC10992.1 stx1Bc Shiga toxin Stx1c subunit B | |
| 896 Protein Added: CAY54182.1 bfpA bundle-forming pilus major subunit BfpA | |
| 897 Protein Added: AAN29240.1 bepD multidrug efflux RND transporter periplasmic adaptor subunit BepD | |
| 898 Protein Added: AAN29241.1 bepE multidrug efflux RND transporter permease subunit BepE | |
| 899 Protein Added: AAN29871.1 bepC multidrug efflux RND transporter outer membrane subunit BepC | |
| 900 Protein Added: AAN33534.1 bepG multidrug efflux RND transporter permease subunit BepG | |
| 901 Protein Added: AAN33535.1 bepF multidrug efflux RND transporter periplasmic adaptor subunit BepF | |
| 902 Protein Added: CAD48850.1 cdtB cytolethal distending toxin type III/V nuclease subunit CdtB | |
| 903 Protein Added: CAC86907.1 merB organomercurial lyase MerB | |
| 904 Protein Added: BAH65949.1 iroN siderophore salmochelin receptor IroN | |
| 905 Protein Added: BAH72965.1 cdtB cytolethal distending toxin type II nuclease subunit CdtB | |
| 906 Protein Added: AAN42986.1 ipaH3 T3SS effector E3 ubiquitin-protein ligase IpaH3 | |
| 907 Protein Added: AAN43435.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8 | |
| 908 Protein Added: AAN44449.1 sigA serine protease autotransporter toxin SigA | |
| 909 Protein Added: CAQ68302.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 910 Protein Added: ACS88189.1 ipaD type III secretion system needle tip complex protein IpaD | |
| 911 Protein Added: AAC45719.1 f17a F17A fimbrial adhesin | |
| 912 Protein Added: AAC45722.1 f17g F17G fimbrial adhesin | |
| 913 Protein Added: AAN68576.1 mrdH Ni(II)/Co(II) efflux transporter permease subunit MrdH | |
| 914 Protein Added: AAN68577.1 mreA metal-sensing transcriptional repressor MreA | |
| 915 Protein Added: ACT33468.1 f17a F17A fimbrial adhesin | |
| 916 Protein Added: ACT33471.1 f17g F17G fimbrial adhesin | |
| 917 Protein Added: ACT72391.1 tccP Tir-cytoskeleton coupling protein TccP | |
| 918 Protein Added: CAR47993.1 espA type III secretion system LEE translocon filament protein EspA | |
| 919 Protein Added: CAR48009.1 nleB type III secretion system effector arginine glycosyltransferase NleB | |
| 920 Protein Added: BAH86759.1 stx2Af Shiga toxin Stx2f subunit A | |
| 921 Protein Added: BAH86760.1 stx2Bf Shiga toxin Stx2f subunit B | |
| 922 Protein Added: BAA20338.2 merB organomercurial lyase MerB | |
| 923 Protein Added: ACU32684.1 stx2Aa Shiga toxin Stx2a subunit A | |
| 924 Protein Added: ACU65296.1 merA mercury(II) reductase | |
| 925 Protein Added: CAX45702.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 926 Protein Added: CAX45706.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 927 Protein Added: CAX45714.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 928 Protein Added: CAX45718.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 929 Protein Added: CAX45737.1 stx2Bd Shiga toxin Stx2d subunit B | |
| 930 Protein Added: CAX45739.1 stx2Ba Shiga toxin Stx2a subunit B | |
| 931 Protein Added: CAX45746.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 932 Protein Added: CAX51714.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 933 Protein Added: AAB82330.1 aafA aggregative adherence fimbria II major subunit AafA | |
| 934 Protein Added: BAI25473.1 nleC type III secretion system effector zinc metalloprotease NleC | |
| 935 Protein Added: BAI31154.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 936 Protein Added: BAI32292.1 nleB type III secretion system effector arginine glycosyltransferase NleB | |
| 937 Protein Added: BAI32327.1 espB type III secretion system LEE translocon pore-forming subunit EspB | |
| 938 Protein Added: BAI32516.1 espI serine protease autotransporter EspI | |
| 939 Protein Added: BAI33940.1 etpD variant type II secretion system secretin EtpD | |
| 940 Protein Added: BAI36256.1 nleC type III secretion system effector zinc metalloprotease NleC | |
| 941 Protein Added: BAI36790.1 nleA type III secretion system effector NleA | |
| 942 Protein Added: BAI37513.1 nleB type III secretion system effector arginine glycosyltransferase NleB | |
| 943 Protein Added: BAI37519.1 espF type III secretion system LEE effector EspF | |
| 944 Protein Added: BAI37525.1 espA type III secretion system LEE translocon filament protein EspA | |
| 945 Protein Added: BAA23166.1 merG phenylmercury resistance protein MerG | |
| 946 Protein Added: AAN76093.1 iroN siderophore salmochelin receptor IroN | |
| 947 Protein Added: AAN77057.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 948 Protein Added: AAN77061.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 949 Protein Added: AAN77063.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 950 Protein Added: BAI44131.1 agg5A aggregative adherence fimbria V major subunit Agg5A | |
| 951 Protein Added: AAD12176.1 srpB solvent efflux RND transporter permease subunit SrpB | |
| 952 Protein Added: AAD12177.1 ttgI solvent efflux RND transporter outer membrane subunit SrpC | |
| 953 Protein Added: AAD12178.1 srpA solvent efflux RND transporter periplasmic adaptor subunit SrpA | |
| 954 Protein Added: AAN78874.1 vactox vacuolating autotransporter toxin Vat | |
| 955 Protein Added: AAN79707.1 iroN siderophore salmochelin receptor IroN | |
| 956 Protein Added: AAN80033.1 iss increased serum survival lipoprotein Iss | |
| 957 Protein Added: AAN83596.1 ireA TonB-dependent siderophore receptor IreA | |
| 958 Protein Added: CAB14519.1 arsC thioredoxin-dependent arsenate reductase | |
| 959 Protein Added: AAB91079.1 copB copper-binding protein CopB | |
| 960 Protein Added: CAA05105.1 copP copper-binding metallochaperone CopP | |
| 961 Protein Added: AAB88410.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 962 Protein Added: EEZ94110.1 sdeA multidrug efflux RND transporter periplasmic adaptor subunit SdeA | |
| 963 Protein Added: AAO17297.1 eatA serine protease autotransporter toxin EatA | |
| 964 Protein Added: ADA73787.1 ipaH3 T3SS effector E3 ubiquitin-protein ligase IpaH3 | |
| 965 Protein Added: ADA76801.1 sepA serine protease autotransporter toxin SepA | |
| 966 Protein Added: AAO19475.1 stx1Ad Shiga toxin Stx1d subunit A | |
| 967 Protein Added: AAO19476.1 stx1Bd Shiga toxin Stx1d subunit B | |
| 968 Protein Added: ADA79992.1 merT mercuric transport protein MerT | |
| 969 Protein Added: CBG87859.1 nleB type III secretion system effector arginine glycosyltransferase NleB | |
| 970 Protein Added: CBG89712.1 espA type III secretion system LEE translocon filament protein EspA | |
| 971 Protein Added: CAD66214.1 vactox vacuolating autotransporter toxin Vat | |
| 972 Protein Added: ADB20445.1 toxB toxin B | |
| 973 Protein Added: CBG36837.1 eilA HilA family transcriptional regulator EilA | |
| 974 Protein Added: CBG36838.1 air inverse autotransporter adhesin EaeX/Air | |
| 975 Protein Added: CBG37385.1 aaiC type VI secretion system protein AaiC/Hcp2 | |
| 976 Protein Added: CBG27762.1 aatA dispersin export ABC transporter outer membrane protein AatA | |
| 977 Protein Added: CBG27784.1 aafB aggregative adherence fimbria II minor subunit AafB | |
| 978 Protein Added: CBG27798.1 aafD aggregative adherence fimbria II chaperone AafD | |
| 979 Protein Added: CBG27800.1 aafA aggregative adherence fimbria II major subunit AafA | |
| 980 Protein Added: CBG27804.1 aggR aggregative adherence transcriptional regulator AggR | |
| 981 Protein Added: CBG27807.1 aap dispersin Aap | |
| 982 Protein Added: CBG27812.1 aar AggR-activated transcriptional regulator Aar | |
| 983 Protein Added: AAD12174.1 stx2Ab Shiga toxin Stx2b subunit A | |
| 984 Protein Added: AAO49780.1 ttgD toluene efflux RND transporter periplasmic adaptor subunit TtgD | |
| 985 Protein Added: AAC38390.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 986 Protein Added: AAC38394.1 espA type III secretion system LEE translocon filament protein EspA | |
| 987 Protein Added: AAC38400.1 espF type III secretion system LEE effector EspF | |
| 988 Protein Added: BAA24822.1 arsA arsenite efflux transporter ATPase subunit ArsA | |
| 989 Protein Added: AAA20885.1 astA heat-stable enterotoxin EAST1 | |
| 990 Protein Added: AAA23736.1 f17g F17G fimbrial adhesin | |
| 991 Protein Added: AAA23737.1 f17a F17A fimbrial adhesin | |
| 992 Protein Added: ADD58872.1 espF type III secretion system LEE effector EspF | |
| 993 Protein Added: ADD58881.1 eae intimin type gamma | |
| 994 Protein Added: ADD58883.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 995 Protein Added: EFF39147.1 norM sodium-coupled multidrug efflux MATE transporter NorM | |
| 996 Protein Added: AAO66617.1 espA type III secretion system LEE translocon filament protein EspA | |
| 997 Protein Added: BAJ04486.1 perA BFP system transcriptional regulator PerA | |
| 998 Protein Added: BAJ04488.1 perA BFP system transcriptional regulator PerA | |
| 999 Protein Added: AAC38219.1 merP mercury resistance system periplasmic binding protein MerP | |
| 1000 Protein Added: AAC38220.1 merA mercury(II) reductase | |
| 1001 Protein Added: AAC38221.1 merD mercury resistance co-regulator MerD | |
| 1002 Protein Added: ADE90928.1 vactox vacuolating autotransporter toxin Vat | |
| 1003 Protein Added: AAC38229.1 merR mercury resistance transcriptional regulator MerR | |
| 1004 Protein Added: AAC38230.1 merB organomercurial lyase MerB | |
| 1005 Protein Added: AAC38231.1 merT mercuric transport protein MerT | |
| 1006 Protein Added: AAC38232.1 merP mercury resistance system periplasmic binding protein MerP | |
| 1007 Protein Added: AAC38233.1 merC organomercurial transporter MerC | |
| 1008 Protein Added: AAC38236.1 merE broad-spectrum mercury transporter MerE | |
| 1009 Protein Added: ADF64798.1 ncrC Ni(II)/Co(II) efflux transporter permease subunit NcrC | |
| 1010 Protein Added: CBK85583.1 iroN siderophore salmochelin receptor IroN | |
| 1011 Protein Added: CBL93318.1 capU putative hexosyltransferase CapU | |
| 1012 Protein Added: CBL93506.1 lngA type IV pilus longus major pilin | |
| 1013 Protein Added: ADI59685.1 astA heat-stable enterotoxin EAST1 | |
| 1014 Protein Added: ADI95409.1 ttgE multidrug efflux RND transporter permease subunit TtgE | |
| 1015 Protein Added: ADI95411.1 ttgT efflux transport transcriptional regulator TtgT | |
| 1016 Protein Added: AAP03990.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF | |
| 1017 Protein Added: AAP18950.1 lpfA long polar fimbria major subunit LpfA-O113 | |
| 1018 Protein Added: ADK23698.1 qacR multidrug-binding transcriptional regulator QacR | |
| 1019 Protein Added: ADK73987.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1020 Protein Added: AAM22256.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 1021 Protein Added: AAM22257.1 stx2Bd Shiga toxin Stx2d subunit B | |
| 1022 Protein Added: CAD56174.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF | |
| 1023 Protein Added: CAD56186.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF | |
| 1024 Protein Added: AAA16360.1 stx2Ab Shiga toxin Stx2b subunit A | |
| 1025 Protein Added: AAA16361.1 stx2Bb Shiga toxin Stx2b subunit B | |
| 1026 Protein Added: AAA16362.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 1027 Protein Added: ADM83435.1 nleA type III secretion system effector NleA | |
| 1028 Protein Added: ADN71659.1 iss increased serum survival lipoprotein Iss | |
| 1029 Protein Added: AAP37403.1 stx2Ag Shiga toxin Stx2g subunit A | |
| 1030 Protein Added: AAC26634.1 pet serine protease autotransporter toxin Pet | |
| 1031 Protein Added: CBJ04488.1 cfaC CFA/I pilus usher protein CfaC | |
| 1032 Protein Added: AAC15683.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1033 Protein Added: ADO96486.1 hmrM sodium-coupled multidrug efflux MATE transporter HmrM | |
| 1034 Protein Added: ADP02162.1 merA mercury(II) reductase | |
| 1035 Protein Added: CAA73506.1 espA type III secretion system LEE translocon filament protein EspA | |
| 1036 Protein Added: ADR26561.1 iss increased serum survival lipoprotein Iss | |
| 1037 Protein Added: ADR70747.1 copA laccase-like oxidase CopA | |
| 1038 Protein Added: ADR70748.1 copB copper-binding protein CopB | |
| 1039 Protein Added: BAC77251.1 sdeY multidrug efflux RND transporter permease subunit SdeY | |
| 1040 Protein Added: ADW66881.1 arsH arsenic resistance NADPH-dependent reductase ArsH | |
| 1041 Protein Added: AAP78989.1 ipaD type III secretion system needle tip complex protein IpaD | |
| 1042 Protein Added: BAC78639.1 stx1Aa Shiga toxin Stx1a subunit A | |
| 1043 Protein Added: BAC78640.1 stx1Ba Shiga toxin Stx1a subunit B | |
| 1044 Protein Added: AAC69314.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1045 Protein Added: AAC69318.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1046 Protein Added: BAJ79293.1 aafA aggregative adherence fimbria II major subunit AafA | |
| 1047 Protein Added: BAJ79295.1 aafA aggregative adherence fimbria II major subunit AafA | |
| 1048 Protein Added: BAJ79296.1 aafA aggregative adherence fimbria II major subunit AafA | |
| 1049 Protein Added: BAJ79297.1 aafA aggregative adherence fimbria II major subunit AafA | |
| 1050 Protein Added: BAJ79299.1 agg5A aggregative adherence fimbria V major subunit Agg5A | |
| 1051 Protein Added: BAJ79300.1 agg5A aggregative adherence fimbria V major subunit Agg5A | |
| 1052 Protein Added: ADY84088.1 nreB nickel resistance MFS transporter NreB | |
| 1053 Protein Added: AAC24352.1 ehxA enterohemolysin | |
| 1054 Protein Added: ADZ45128.1 ehxA enterohemolysin | |
| 1055 Protein Added: AAP88295.1 copA laccase-like oxidase CopA | |
| 1056 Protein Added: AEC46567.1 copA laccase-like oxidase CopA | |
| 1057 Protein Added: AEC46568.1 copB copper-binding protein CopB | |
| 1058 Protein Added: AAC38671.1 ttgB multidrug efflux RND transporter permease subunit TtgB | |
| 1059 Protein Added: BAA31774.1 ehxA enterohemolysin | |
| 1060 Protein Added: BAA31815.1 toxB toxin B | |
| 1061 Protein Added: BAA31832.1 katP catalase/peroxidase KatP | |
| 1062 Protein Added: BAA31836.1 espP serine protease autotransporter EspP | |
| 1063 Protein Added: AAQ17236.1 mco multi-copper oxidase Mco | |
| 1064 Protein Added: AAQ17546.1 stx2Ae Shiga toxin Stx2e subunit A | |
| 1065 Protein Added: CAA74174.1 espB type III secretion system LEE translocon pore-forming subunit EspB | |
| 1066 Protein Added: AEG95593.1 iroN siderophore salmochelin receptor IroN | |
| 1067 Protein Added: AAQ20107.1 cfaC CFA/I pilus usher protein CfaC | |
| 1068 Protein Added: AEK01061.1 iroN siderophore salmochelin receptor IroN | |
| 1069 Protein Added: AAC31499.1 espB type III secretion system LEE translocon pore-forming subunit EspB | |
| 1070 Protein Added: AAY90617.2 emhA efflux RND transporter periplasmic adaptor subunit EmhA | |
| 1071 Protein Added: CAA12346.1 espA type III secretion system LEE translocon filament protein EspA | |
| 1072 Protein Added: CAA12348.1 espA type III secretion system LEE translocon filament protein EspA | |
| 1073 Protein Added: AEM17342.1 cdtB cytolethal distending toxin nuclease subunit CdtB | |
| 1074 Protein Added: AAC33154.1 lngA type IV pilus longus major pilin | |
| 1075 Protein Added: AEQ14997.1 eilA HilA family transcriptional regulator EilA | |
| 1076 Protein Added: AEQ15694.1 capU putative hexosyltransferase CapU | |
| 1077 Protein Added: AAC33908.1 merC organomercurial transporter MerC | |
| 1078 Protein Added: CCE21264.1 agg3A aggregative adherence fimbria 3 major subunit Agg3A | |
| 1079 Protein Added: EHE72460.1 pmrA multidrug efflux MFS transporter PmrA | |
| 1080 Protein Added: EHF16244.1 aatA dispersin export ABC transporter outer membrane protein AatA | |
| 1081 Protein Added: EHF16297.1 aggB aggregative adherence fimbria I minor subunit AggB | |
| 1082 Protein Added: EHF16298.1 aggA aggregative adherence fimbria I major subunit AggA | |
| 1083 Protein Added: AET11941.1 nleA type III secretion system effector NleA | |
| 1084 Protein Added: AET11995.1 nleA type III secretion system effector NleA | |
| 1085 Protein Added: AET12008.1 nleA type III secretion system effector NleA | |
| 1086 Protein Added: BAL46940.1 eae intimin type alpha | |
| 1087 Protein Added: BAL46941.1 eae intimin type epsilon | |
| 1088 Protein Added: BAL47132.1 eae intimin type epsilon | |
| 1089 Protein Added: BAL47176.1 eae intimin type rho | |
| 1090 Protein Added: BAL47179.1 eae intimin type epsilon | |
| 1091 Protein Added: BAL47181.1 eae intimin type alpha | |
| 1092 Protein Added: AEZ42789.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1093 Protein Added: AEZ43710.1 nleA type III secretion system effector NleA | |
| 1094 Protein Added: AAQ92182.1 emhC efflux RND transporter outer membrane subunit EmhC | |
| 1095 Protein Added: CAA77068.1 aggA aggregative adherence fimbria I major subunit AggA | |
| 1096 Protein Added: AAR02190.1 aggA aggregative adherence fimbria I major subunit AggA | |
| 1097 Protein Added: BAL72684.1 cdtB cytolethal distending toxin nuclease subunit CdtB | |
| 1098 Protein Added: BAL72697.1 cdtB cytolethal distending toxin nuclease subunit CdtB | |
| 1099 Protein Added: AAR12207.1 cdtB cytolethal distending toxin type III/V nuclease subunit CdtB | |
| 1100 Protein Added: AAC69584.1 ybtQ yersiniabactin ABC transporter ATP-binding/permease protein YbtQ | |
| 1101 Protein Added: AAR13270.1 iroN siderophore salmochelin receptor IroN | |
| 1102 Protein Added: AFH14350.1 faeG F4 fimbrial adhesin subunit FaeG | |
| 1103 Protein Added: CAD87828.1 sta1 heat-stable enterotoxin ST-I group a | |
| 1104 Protein Added: BAA34299.1 mexX multidrug efflux RND transporter periplasmic adaptor subunit MexX | |
| 1105 Protein Added: AFK88558.1 auto-sat serine protease autotransporter toxin Sat | |
| 1106 Protein Added: AFM31243.1 tccP Tir-cytoskeleton coupling protein TccP2 | |
| 1107 Protein Added: AFM70729.1 copA copper-translocating P-type ATPase CopA | |
| 1108 Protein Added: AFM70730.1 copB copper/silver-translocating P-type ATPase CopB | |
| 1109 Protein Added: AAC82360.1 espB type III secretion system LEE translocon pore-forming subunit EspB | |
| 1110 Protein Added: AAR82963.1 nirA nickel resistance membrane nickel efflux protein NirA | |
| 1111 Protein Added: AAR82964.1 nirB nickel-sensing transcriptional repressor NirB | |
| 1112 Protein Added: AAR82966.1 nirD nickel resistance OB fold protein NirD | |
| 1113 Protein Added: AFQ65076.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF | |
| 1114 Protein Added: CAA50007.1 cnf1 cytotoxic necrotizing factor CNF1 | |
| 1115 Protein Added: CAA12345.1 espA type III secretion system LEE translocon filament protein EspA | |
| 1116 Protein Added: CAA12350.1 espA type III secretion system LEE translocon filament protein EspA | |
| 1117 Protein Added: CAA12351.1 espA type III secretion system LEE translocon filament protein EspA | |
| 1118 Protein Added: AFS59871.1 sepA serine protease autotransporter toxin SepA | |
| 1119 Protein Added: AFS85685.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF | |
| 1120 Protein Added: AAC99337.1 espA type III secretion system LEE translocon filament protein EspA | |
| 1121 Protein Added: CAA21388.1 ybtP yersiniabactin ABC transporter ATP-binding/permease protein YbtP | |
| 1122 Protein Added: BAA36431.1 merR mercury resistance transcriptional regulator MerR | |
| 1123 Protein Added: BAA36433.1 merD mercury resistance co-regulator MerD | |
| 1124 Protein Added: CAA40744.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF | |
| 1125 Protein Added: CAA23532.1 ltcA heat-labile enterotoxin LT subunit A | |
| 1126 Protein Added: CAA32535.1 fim41a fimbrial adhesin F41 protein Fim41a | |
| 1127 Protein Added: AAD05936.1 copP copper-binding metallochaperone CopP | |
| 1128 Protein Added: AAS07580.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 1129 Protein Added: AAS07581.1 stx2Bc Shiga toxin Stx2c subunit B | |
| 1130 Protein Added: AAS07582.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 1131 Protein Added: AAS07586.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 1132 Protein Added: AAS07588.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 1133 Protein Added: AAS07589.1 stx2Bd Shiga toxin Stx2d subunit B | |
| 1134 Protein Added: AAS07590.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 1135 Protein Added: AAS07596.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 1136 Protein Added: AAS07600.1 stx2Aa Shiga toxin Stx2a subunit A | |
| 1137 Protein Added: AAS07606.1 stx2Aa Shiga toxin Stx2a subunit A | |
| 1138 Protein Added: AAD11743.1 silE silver-binding protein SilE | |
| 1139 Protein Added: AAD11746.1 silC Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC | |
| 1140 Protein Added: AAD11748.1 silB Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB | |
| 1141 Protein Added: AAD11749.1 silA Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | |
| 1142 Protein Added: AAD11750.1 silP Ag(+)-translocating P-type ATPase SilP | |
| 1143 Protein Added: AFX83959.1 subA subtilase AB5 cytotoxin subunit A | |
| 1144 Protein Added: AAS21297.1 tbtR tribuytltin resistance regulator TbtR | |
| 1145 Protein Added: CAA43585.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 1146 Protein Added: AAD15663.1 tbtA multidrug efflux RND transporter periplasmic adaptor subunit TbtA | |
| 1147 Protein Added: AAD15664.1 tbtB multidrug efflux RND transporter permease subunit TbtB | |
| 1148 Protein Added: AAD15665.1 tbtM multidrug efflux RND transporter outer membrane channel subunit TbtM | |
| 1149 Protein Added: AAD17509.1 f17a F17A fimbrial adhesin | |
| 1150 Protein Added: AAD17510.1 f17a F17A fimbrial adhesin | |
| 1151 Protein Added: AAD17511.1 f17a F17A fimbrial adhesin | |
| 1152 Protein Added: AAD17513.1 f17g F17G fimbrial adhesin | |
| 1153 Protein Added: AAD17514.1 f17g F17G fimbrial adhesin | |
| 1154 Protein Added: AAD17515.1 f17g F17G fimbrial adhesin | |
| 1155 Protein Added: AAA18786.1 cdtB cytolethal distending toxin type II nuclease subunit CdtB | |
| 1156 Protein Added: CAA77320.1 merR mercury resistance transcriptional regulator MerR | |
| 1157 Protein Added: CAA77324.1 merD mercury resistance co-regulator MerD | |
| 1158 Protein Added: CAA77325.1 merE broad-spectrum mercury transporter MerE | |
| 1159 Protein Added: CAA81047.1 mtrR multidrug efflux system transcriptional repressor MtrR | |
| 1160 Protein Added: AAA74436.1 mexA multidrug efflux RND transporter periplasmic adaptor subunit MexA | |
| 1161 Protein Added: AGC14252.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF | |
| 1162 Protein Added: AAS47019.1 nleC type III secretion system effector zinc metalloprotease NleC | |
| 1163 Protein Added: AGC85979.1 iss increased serum survival lipoprotein Iss | |
| 1164 Protein Added: CCG33322.1 iroN siderophore salmochelin receptor IroN | |
| 1165 Protein Added: AAS50165.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF | |
| 1166 Protein Added: AAO18187.2 sdeB multidrug efflux RND transporter permease subunit SdeB | |
| 1167 Protein Added: AAA98221.1 merR mercury resistance transcriptional regulator MerR | |
| 1168 Protein Added: AAS76847.1 fedA F18 fimbrial major subunit FedA | |
| 1169 Protein Added: AAD25959.1 merR2 mercury resistance transcriptional regulator MerR2 | |
| 1170 Protein Added: AAA98245.1 merA mercury(II) reductase | |
| 1171 Protein Added: AAD27810.1 aafC aggregative adherence fimbria II usher protein AafC | |
| 1172 Protein Added: AAA24698.1 tsh temperature-sensitive protease autotransporter hemagglutinin Tsh | |
| 1173 Protein Added: CAE82650.1 faeG F4 fimbrial adhesin subunit FaeG | |
| 1174 Protein Added: CAE82653.1 faeG F4 fimbrial adhesin subunit FaeG | |
| 1175 Protein Added: CAE82670.1 faeG F4 fimbrial adhesin subunit FaeG | |
| 1176 Protein Added: AAD28079.1 hlyE hemolysin HlyE | |
| 1177 Protein Added: CAA83535.1 aggR aggregative adherence transcriptional regulator AggR | |
| 1178 Protein Added: EMS03085.1 aggA aggregative adherence fimbria I major subunit AggA | |
| 1179 Protein Added: CAE55775.1 auto-sat serine protease autotransporter toxin Sat | |
| 1180 Protein Added: AAT36311.1 rpeA serine protease autotransporter colonization factor RpeA | |
| 1181 Protein Added: BAA77749.1 stx2Ab Shiga toxin Stx2b subunit A | |
| 1182 Protein Added: BAA77750.1 stx2Bb Shiga toxin Stx2b subunit B | |
| 1183 Protein Added: BAA77751.1 stx2Ab Shiga toxin Stx2b subunit A | |
| 1184 Protein Added: CAA46767.1 stx2Ab Shiga toxin Stx2b subunit A | |
| 1185 Protein Added: CAA46768.1 stx2Bb Shiga toxin Stx2b subunit B | |
| 1186 Protein Added: CAA77936.1 emrE multidrug efflux SMR transporter EmrE | |
| 1187 Protein Added: AAT65972.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 1188 Protein Added: AAT66000.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 1189 Protein Added: AAT66010.1 stx2Aa Shiga toxin Stx2a subunit A | |
| 1190 Protein Added: AAT66011.1 stx2Ba Shiga toxin Stx2a subunit B | |
| 1191 Protein Added: AAT66012.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 1192 Protein Added: AGL46515.1 merF mercury resistance system transport protein MerF | |
| 1193 Protein Added: AAT68784.1 subB subtilase AB5 cytotoxin subunit B | |
| 1194 Protein Added: AAT68785.1 subA subtilase AB5 cytotoxin subunit A | |
| 1195 Protein Added: AAT76975.1 lpfA long polar fimbria major subunit LpfA-O113 | |
| 1196 Protein Added: AAD39553.1 ttgA toluene efflux RND transporter periplasmic adaptor subunit TtgA | |
| 1197 Protein Added: AAU01878.1 sepA serine protease autotransporter toxin SepA | |
| 1198 Protein Added: AAN38824.2 adeE multidrug efflux RND transporter permease subunit AdeE | |
| 1199 Protein Added: AAU10477.1 adeD multidrug efflux RND transporter periplasmic adaptor subunit AdeD | |
| 1200 Protein Added: AAU88208.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 1201 Protein Added: AAU88264.1 cdtB cytolethal distending toxin nuclease subunit CdtB | |
| 1202 Protein Added: AAA57451.1 aggD aggregative adherence fimbria I chaperone AggD | |
| 1203 Protein Added: AAA57452.1 aggC aggregative adherence fimbria I usher protein AggC | |
| 1204 Protein Added: AAA57453.1 aggB aggregative adherence fimbria I minor subunit AggB | |
| 1205 Protein Added: AAA57454.1 aggA aggregative adherence fimbria I major subunit AggA | |
| 1206 Protein Added: CAA85366.1 stx1Aa Shiga toxin Stx1a subunit A | |
| 1207 Protein Added: CAA85368.1 stx1Aa Shiga toxin Stx1a subunit A | |
| 1208 Protein Added: CAA85370.1 stx1Ac Shiga toxin Stx1c subunit A | |
| 1209 Protein Added: CAA85371.1 stx1Bc Shiga toxin Stx1c subunit B | |
| 1210 Protein Added: EQX61716.1 aggA aggregative adherence fimbria I major subunit AggA | |
| 1211 Protein Added: AAU95470.1 nleB type III secretion system effector arginine glycosyltransferase NleB | |
| 1212 Protein Added: AAU95768.1 mepA multidrug efflux MATE transporter MepA | |
| 1213 Protein Added: CAG17536.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1214 Protein Added: CAG17541.1 espA type III secretion system LEE translocon filament protein EspA | |
| 1215 Protein Added: AAD43578.1 astA heat-stable enterotoxin EAST1 | |
| 1216 Protein Added: AAD43579.1 astA heat-stable enterotoxin EAST1 | |
| 1217 Protein Added: CAA85780.1 stx2Aa Shiga toxin Stx2a subunit A | |
| 1218 Protein Added: AAA80193.1 mtrC multidrug efflux RND transporter periplasmic adaptor subunit MtrC | |
| 1219 Protein Added: AAD44693.1 mtrA efflux transporter MtrCDE transcriptional activator MtrA | |
| 1220 Protein Added: AAD47284.1 terZ tellurium resistance-associated protein TerZ | |
| 1221 Protein Added: AAW38464.1 lmrS multidrug efflux MFS transporter LmrS | |
| 1222 Protein Added: CAI43856.1 espF type III secretion system LEE effector EspF | |
| 1223 Protein Added: CAI43860.1 espB type III secretion system LEE translocon pore-forming subunit EspB | |
| 1224 Protein Added: CAI43862.1 espA type III secretion system LEE translocon filament protein EspA | |
| 1225 Protein Added: CAI43865.1 eae intimin type epsilon | |
| 1226 Protein Added: CAI43867.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1227 Protein Added: AAD54074.1 farB fatty acid resistance MFS efflux transporter permease subunit FarB | |
| 1228 Protein Added: BAA84838.1 bfpA bundle-forming pilus major subunit BfpA | |
| 1229 Protein Added: BAA84859.1 perA BFP system transcriptional regulator PerA | |
| 1230 Protein Added: AAT35241.2 tsh temperature-sensitive protease autotransporter hemagglutinin Tsh | |
| 1231 Protein Added: AAF03351.1 espF type III secretion system LEE effector EspF | |
| 1232 Protein Added: AHW84565.1 aaiC type VI secretion system protein AaiC/Hcp2 | |
| 1233 Protein Added: AHW84567.1 aaiC type VI secretion system protein AaiC/Hcp2 | |
| 1234 Protein Added: AAX47728.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1235 Protein Added: AAX47729.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1236 Protein Added: AAX47730.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1237 Protein Added: AAX47731.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1238 Protein Added: CAA58525.1 pcoA multicopper oxidase PcoA | |
| 1239 Protein Added: CAA58526.1 pcoB copper-binding protein PcoB | |
| 1240 Protein Added: CAA58527.1 pcoC copper resistance system metallochaperone PcoC | |
| 1241 Protein Added: CAA58528.1 pcoD copper resistance inner membrane protein PcoD | |
| 1242 Protein Added: CAA58529.1 pcoR copper response regulator transcription factor PcoR | |
| 1243 Protein Added: CAA58530.1 pcoS copper resistance membrane spanning protein PcoS | |
| 1244 Protein Added: CAA58532.1 pcoE copper resistance system metallochaperone PcoE | |
| 1245 Protein Added: AAX63244.1 fedF F18 fimbrial adhesin subunit FedF | |
| 1246 Protein Added: AAX63245.1 fedF F18 fimbrial adhesin subunit FedF | |
| 1247 Protein Added: AAX63259.1 fedF F18 fimbrial adhesin subunit FedF | |
| 1248 Protein Added: AAX63270.1 fedF F18 fimbrial adhesin subunit FedF | |
| 1249 Protein Added: AAY25390.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1250 Protein Added: AAY25394.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1251 Protein Added: AAY25395.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1252 Protein Added: AAF14522.1 mexX multidrug efflux RND transporter periplasmic adaptor subunit MexX | |
| 1253 Protein Added: CAI91198.1 stx2Ag Shiga toxin Stx2g subunit A | |
| 1254 Protein Added: AAF16681.1 srpS solvent efflux transporter transcriptional repressor SrpS | |
| 1255 Protein Added: AAF16682.1 srpR solvent efflux transporter antirepressor SrpR | |
| 1256 Protein Added: CAA54115.1 nfaE Dr family non-fimbrial adhesin I chaperone NfaE | |
| 1257 Protein Added: AAF23359.1 eae intimin type epsilon | |
| 1258 Protein Added: CAB64953.1 stx2Af Shiga toxin Stx2f subunit A | |
| 1259 Protein Added: AAY63864.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 1260 Protein Added: AAY63865.1 stx2Bd Shiga toxin Stx2d subunit B | |
| 1261 Protein Added: CDY80020.1 hsp20 small heat shock protein sHSP20 | |
| 1262 Protein Added: AAY90615.1 emhC efflux RND transporter outer membrane subunit EmhC | |
| 1263 Protein Added: KGL71342.1 silF Ag(+)/Cu(+) efflux RND transporter periplasmic metallochaperone SilF | |
| 1264 Protein Added: AAF40764.1 farB fatty acid resistance MFS efflux transporter permease subunit FarB | |
| 1265 Protein Added: AAF42063.1 mtrC multidrug efflux RND transporter periplasmic adaptor subunit MtrC | |
| 1266 Protein Added: AAB26855.2 nfaE Dr family non-fimbrial adhesin I chaperone NfaE | |
| 1267 Protein Added: CAB82448.1 cnrY nickel resistance system anti-sigma factor CnrY | |
| 1268 Protein Added: AAZ76497.1 ehxA enterohemolysin | |
| 1269 Protein Added: AAZ76514.1 espP serine protease autotransporter EspP | |
| 1270 Protein Added: AAZ76524.1 subA subtilase AB5 cytotoxin subunit A | |
| 1271 Protein Added: AAZ87985.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8 | |
| 1272 Protein Added: AAZ88030.1 ipaH3 T3SS effector E3 ubiquitin-protein ligase IpaH3 | |
| 1273 Protein Added: AAZ89804.1 sigA serine protease autotransporter toxin SigA | |
| 1274 Protein Added: AAZ91108.1 ipaD type III secretion system needle tip complex protein IpaD | |
| 1275 Protein Added: ABA25986.1 merF mercury resistance system transport protein MerF | |
| 1276 Protein Added: AAX22079.2 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF | |
| 1277 Protein Added: AAA65102.1 nccX periplasmic metal sensor NccX | |
| 1278 Protein Added: AAA65103.1 nccH nickel/cobalt/cadmium resistance ECF sigma factor NccH | |
| 1279 Protein Added: ABB16332.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1280 Protein Added: ABB36584.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 1281 Protein Added: ABB36586.1 stx2Ad Shiga toxin Stx2d subunit A | |
| 1282 Protein Added: ABB61187.1 iroN siderophore salmochelin receptor IroN | |
| 1283 Protein Added: ABB62096.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8 | |
| 1284 Protein Added: ABB62098.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8 | |
| 1285 Protein Added: ABB64677.1 ipaD type III secretion system needle tip complex protein IpaD | |
| 1286 Protein Added: ABB65884.1 ipaH3 T3SS effector E3 ubiquitin-protein ligase IpaH3 | |
| 1287 Protein Added: ABB66229.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8 | |
| 1288 Protein Added: ABB68924.1 virF AraC family invasion system transcriptional regulator VirF | |
| 1289 Protein Added: KLB41245.1 copL transcriptional regulator CopL | |
| 1290 Protein Added: CAI79539.1 eatA serine protease autotransporter toxin EatA | |
| 1291 Protein Added: CAJ44959.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF | |
| 1292 Protein Added: CAB77169.2 stx2Ae Shiga toxin Stx2e subunit A | |
| 1293 Protein Added: CAB94149.1 stx2Ba Shiga toxin Stx2a subunit B | |
| 1294 Protein Added: AAC34727.1 faeG F4 fimbrial adhesin subunit FaeG | |
| 1295 Protein Added: BAA96815.1 tir type III secretion system LEE translocated intimin receptor Tir | |
| 1296 Protein Added: AAA69514.1 f17g F17G fimbrial adhesin | |
| 1297 Protein Added: CAA88252.1 sepA serine protease autotransporter toxin SepA | |
| 1298 Protein Added: BAE79899.1 smfY multidrug efflux MFS transporter SmfY | |
| 1299 Protein Added: ABE06598.1 sfaS S-fimbrial adhesin minor subunit SfaS | |
| 1300 Protein Added: ABE10324.1 cnf1 cytotoxic necrotizing factor CNF1 | |
| 1301 Protein Added: CAJ34994.1 bfpA bundle-forming pilus major subunit BfpA | |
| 1302 Protein Added: ABF13034.1 merD mercury resistance co-regulator MerD | |
| 1303 Protein Added: ABF13067.1 cnrC nickel efflux RND transporter outer membrane subunit CnrC | |
| 1304 Protein Added: ABF13069.1 cnrA nickel efflux RND transporter permease subunit CnrA | |
| 1305 Protein Added: ABF13070.1 cnrT nickel diffusion facilitator CnrT | |
| 1306 Protein Added: ABF14406.1 ncrA Metal Resistance | |
| 1307 Protein Added: ABF14407.1 ncrB nickel-sensing transcriptional repressor NcrB | |
| 1308 Protein Added: CAK02719.1 cnf1 cytotoxic necrotizing factor CNF1 | |
| 1309 Protein Added: CAA90630.1 stx2Aa Shiga toxin Stx2a subunit A | |
| 1310 Protein Added: BAT41861.1 eae intimin type alpha | |
| 1311 Protein Added: CAK15125.1 mexE MexE family multidrug efflux RND transporter periplasmic adaptor subunit | |
| 1312 Protein Added: AAG01033.1 stx2Ac Shiga toxin Stx2c subunit A | |
| 1313 Protein Added: AAB59153.1 cadC Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC | |
| 1314 Protein Added: ABF61434.1 ncrA Metal Resistance | |
| 1315 Protein Added: ABF61435.1 ncrB nickel-sensing transcriptional repressor NcrB | |
| 1316 Protein Added: ABF61437.1 ncrY nickel resistance OB fold protein NcrY | |
| 1317 Protein Added: AAG05881.1 mexE MexE family multidrug efflux RND transporter periplasmic adaptor subunit | |
| 1318 Protein Added: AAG10695.1 perA BFP system transcriptional regulator PerA | |
| 1319 Protein Added: WP_000697899.1 pmrA pmrA | |
| 1320 Protein Added: WP_097509477.1 acrB acrB | |
| 1321 | |
| 1322 - AMRFinder HMM library Changes: | |
| 1323 Prev. Release: 574 | |
| 1324 This Release: 610 | |
| 1325 Removed: 2 | |
| 1326 Added: 38 | |
| 1327 Changed: 572 | |
| 1328 HMM Removed: NF000478.2 linco_LnuE | |
| 1329 HMM Removed: NF012180.1 tet_MFS_43 | |
| 1330 HMM Added: NF000131.1 MATE_multi_MepA | |
| 1331 HMM Added: NF000249.1 MexE | |
| 1332 HMM Added: NF000252.1 MexX | |
| 1333 HMM Added: NF000263.1 MATE_multi_NorM | |
| 1334 HMM Added: NF000282.2 RND_permease_1 | |
| 1335 HMM Added: NF000314.1 adeB | |
| 1336 HMM Added: NF000315.1 adeC-adeK-oprM | |
| 1337 HMM Added: NF000336.1 emrE | |
| 1338 HMM Added: NF007842.1 PRK10555.1 | |
| 1339 HMM Added: NF010310.2 PRK13747.1 | |
| 1340 HMM Added: NF010315.0 PRK13752.1 | |
| 1341 HMM Added: NF011706.2 PRK15127.1 | |
| 1342 HMM Added: NF028537.1 P_eth_NH2_trans | |
| 1343 HMM Added: NF033086.2 penta_rpt_Qnr | |
| 1344 HMM Added: NF033134.0 cmlA_floR | |
| 1345 HMM Added: NF033142.1 efflux_OM_AdeC | |
| 1346 HMM Added: NF033143.1 efflux_OM_AdeK | |
| 1347 HMM Added: NF033555.1 lyase_MerB | |
| 1348 HMM Added: NF033560.1 merT_RC607 | |
| 1349 HMM Added: NF033565.0 trans_MerF | |
| 1350 HMM Added: NF033627.3 intimin_all | |
| 1351 HMM Added: NF033637.1 transloc_TIR | |
| 1352 HMM Added: NF033639.1 intimin_alpha | |
| 1353 HMM Added: NF033643.1 EspJ_gen | |
| 1354 HMM Added: NF033646.1 toxin_EAST1 | |
| 1355 HMM Added: NF033651.1 cyto_nec_fctrs | |
| 1356 HMM Added: NF033658.1 Shiga_Stx1A | |
| 1357 HMM Added: NF033659.0 Shiga_Stx1B | |
| 1358 HMM Added: NF033660.0 Shiga_Stx2B | |
| 1359 HMM Added: NF033661.1 Shiga_Stx2A | |
| 1360 HMM Added: NF033727.1 chaperon_ArsD | |
| 1361 HMM Added: NF033781.1 chaper_CopP | |
| 1362 HMM Added: NF033783.1 coreg_MerD | |
| 1363 HMM Added: NF033784.1 transport_merC | |
| 1364 HMM Added: NF033786.1 phenyl_MerG | |
| 1365 HMM Added: NF033834.1 RND_adapt_MexA | |
| 1366 HMM Added: TIGR02052.1 TIGR02052 | |
| 1367 HMM Added: TIGR02053.1 TIGR02053 | |
| 1368 --------------------------------------------------------------------- | |
| 1369 Changes included in 2019-04-29.1 | |
| 1370 --------------------------------------------------------------------- | |
| 1371 | |
| 1372 Summary: In addition to the usual addition of 134 new genes and alleles | |
| 1373 community feedback led to the renaming of a few dfr genes. The family | |
| 1374 heirarchy file (fam.tab) was cleaned up by removing a number of superfluous | |
| 1375 entries. | |
| 1376 | |
| 1377 Changes included in 2019-04-29.1 | |
| 1378 - Protein changes: | |
| 1379 Prev. Release: 4810 | |
| 1380 This Release: 4942 | |
| 1381 Removed: 1 | |
| 1382 Added: 134 | |
| 1383 Modified: 3 | |
| 1384 Protein Removed: WP_109545040.1 chrB | |
| 1385 Protein Added: WP_000054744.1 satA_Ba | |
| 1386 Protein Added: WP_001211209.1 blaADC-140 | |
| 1387 Protein Added: WP_001211210.1 blaADC-185 | |
| 1388 Protein Added: WP_001211214.1 blaADC-144 | |
| 1389 Protein Added: WP_001211215.1 blaADC-115 | |
| 1390 Protein Added: WP_001572373.1 mcr-9.1 | |
| 1391 Protein Added: WP_002126587.1 blaADC-120 | |
| 1392 Protein Added: WP_002157727.1 blaADC-117 | |
| 1393 Protein Added: WP_003112187.1 blaADC-191 | |
| 1394 Protein Added: WP_003242546.1 satA_Bs | |
| 1395 Protein Added: WP_004643536.1 blaADC-128 | |
| 1396 Protein Added: WP_004700205.1 blaADC-133 | |
| 1397 Protein Added: WP_004707701.1 blaADC-131 | |
| 1398 Protein Added: WP_004712857.1 blaADC-119 | |
| 1399 Protein Added: WP_004790939.1 blaADC-135 | |
| 1400 Protein Added: WP_004840559.1 blaADC-123 | |
| 1401 Protein Added: WP_004886093.1 blaADC-130 | |
| 1402 Protein Added: WP_005039111.1 blaADC-129 | |
| 1403 Protein Added: WP_005046018.1 blaADC-127 | |
| 1404 Protein Added: WP_005068074.1 blaADC-132 | |
| 1405 Protein Added: WP_005109685.1 blaADC-121 | |
| 1406 Protein Added: WP_005123276.1 blaADC-122 | |
| 1407 Protein Added: WP_005131186.1 blaADC-125 | |
| 1408 Protein Added: WP_005307218.1 blaADC-134 | |
| 1409 Protein Added: WP_005404206.1 blaOXA-813 | |
| 1410 Protein Added: WP_005405613.1 blaOXA-814 | |
| 1411 Protein Added: WP_013197184.1 blaADC-193 | |
| 1412 Protein Added: WP_014207272.1 blaADC-149 | |
| 1413 Protein Added: WP_016137488.1 blaADC-136 | |
| 1414 Protein Added: WP_016140427.1 blaADC-137 | |
| 1415 Protein Added: WP_016146025.1 blaADC-138 | |
| 1416 Protein Added: WP_017386568.1 blaADC-150 | |
| 1417 Protein Added: WP_017778762.1 mcr-3.27 | |
| 1418 Protein Added: WP_017816757.1 blaADC-116 | |
| 1419 Protein Added: WP_026382828.1 blaOXA-114i | |
| 1420 Protein Added: WP_026444036.1 blaOXA-816 | |
| 1421 Protein Added: WP_032039838.1 blaADC-139 | |
| 1422 Protein Added: WP_032053762.1 blaOXA-819 | |
| 1423 Protein Added: WP_032057042.1 blaOXA-820 | |
| 1424 Protein Added: WP_032062810.1 blaADC-141 | |
| 1425 Protein Added: WP_032625176.1 blaACT-66 | |
| 1426 Protein Added: WP_033502167.1 blaADC-143 | |
| 1427 Protein Added: WP_034670108.1 blaOXA-818 | |
| 1428 Protein Added: WP_034688190.1 blaOXA-812 | |
| 1429 Protein Added: WP_036299413.1 sulR | |
| 1430 Protein Added: WP_039246976.1 blaADC-148 | |
| 1431 Protein Added: WP_039258389.1 blaADC-146 | |
| 1432 Protein Added: WP_039270258.1 blaADC-145 | |
| 1433 Protein Added: WP_044718369.1 blaADC-147 | |
| 1434 Protein Added: WP_047726486.1 blaACT-65 | |
| 1435 Protein Added: WP_053498400.1 blaOXA-114h | |
| 1436 Protein Added: WP_054437016.1 blaOXA-114j | |
| 1437 Protein Added: WP_054471662.1 blaOXA-114m | |
| 1438 Protein Added: WP_054500785.1 blaOXA-789 | |
| 1439 Protein Added: WP_054517040.1 blaOXA-114l | |
| 1440 Protein Added: WP_057061999.1 blaOXA-821 | |
| 1441 Protein Added: WP_059247009.1 blaADC-184 | |
| 1442 Protein Added: WP_063099318.1 blaADC-151 | |
| 1443 Protein Added: WP_063147148.1 blaACT-67 | |
| 1444 Protein Added: WP_072292271.1 blaADC-186 | |
| 1445 Protein Added: WP_075040046.1 blaOXA-817 | |
| 1446 Protein Added: WP_076412384.1 blaOXA-114p | |
| 1447 Protein Added: WP_099595307.1 dfrA35 | |
| 1448 Protein Added: WP_103663397.1 sulX | |
| 1449 Protein Added: WP_106743337.1 mcr-1.18 | |
| 1450 Protein Added: WP_109545052.1 mcr-1.14 | |
| 1451 Protein Added: WP_110612827.1 blaOXA-796 | |
| 1452 Protein Added: WP_111280830.1 blaOXA-815 | |
| 1453 Protein Added: WP_115470049.1 blaKPC-40 | |
| 1454 Protein Added: WP_117664257.1 cfxA6 | |
| 1455 Protein Added: WP_125052776.1 blaADC-114 | |
| 1456 Protein Added: WP_136512051.1 blaACT-68 | |
| 1457 Protein Added: WP_136512052.1 blaADC-109 | |
| 1458 Protein Added: WP_136512053.1 blaADC-110 | |
| 1459 Protein Added: WP_136512054.1 blaADC-112 | |
| 1460 Protein Added: WP_136512055.1 blaADC-113 | |
| 1461 Protein Added: WP_136512056.1 blaADC-187 | |
| 1462 Protein Added: WP_136512057.1 blaADC-188 | |
| 1463 Protein Added: WP_136512058.1 blaADC-189 | |
| 1464 Protein Added: WP_136512059.1 blaADC-190 | |
| 1465 Protein Added: WP_136512060.1 blaADC-192 | |
| 1466 Protein Added: WP_136512061.1 blaADC-24 | |
| 1467 Protein Added: WP_136512062.1 blaADC-65 | |
| 1468 Protein Added: WP_136512063.1 blaADC-66 | |
| 1469 Protein Added: WP_136512064.1 blaCTX-M-225 | |
| 1470 Protein Added: WP_136512065.1 blaCTX-M-226 | |
| 1471 Protein Added: WP_136512066.1 blaFRI-7 | |
| 1472 Protein Added: WP_136512067.1 blaIMI-18 | |
| 1473 Protein Added: WP_136512068.1 blaIMP-39 | |
| 1474 Protein Added: WP_136512069.1 blaIMP-46 | |
| 1475 Protein Added: WP_136512070.1 blaKPC-42 | |
| 1476 Protein Added: WP_136512071.1 blaKPC-43 | |
| 1477 Protein Added: WP_136512072.1 blaNDM-28 | |
| 1478 Protein Added: WP_136512073.1 blaOXA-114k | |
| 1479 Protein Added: WP_136512074.1 blaOXA-114n | |
| 1480 Protein Added: WP_136512075.1 blaOXA-114q | |
| 1481 Protein Added: WP_136512076.1 blaOXA-114r | |
| 1482 Protein Added: WP_136512077.1 blaOXA-114s | |
| 1483 Protein Added: WP_136512078.1 blaOXA-114t | |
| 1484 Protein Added: WP_136512079.1 blaOXA-114u | |
| 1485 Protein Added: WP_136512080.1 blaOXA-114v | |
| 1486 Protein Added: WP_136512081.1 blaOXA-114w | |
| 1487 Protein Added: WP_136512082.1 blaOXA-114x | |
| 1488 Protein Added: WP_136512083.1 blaOXA-787 | |
| 1489 Protein Added: WP_136512084.1 blaOXA-788 | |
| 1490 Protein Added: WP_136512085.1 blaOXA-793 | |
| 1491 Protein Added: WP_136512086.1 blaOXA-794 | |
| 1492 Protein Added: WP_136512087.1 blaOXA-795 | |
| 1493 Protein Added: WP_136512088.1 blaOXA-797 | |
| 1494 Protein Added: WP_136512089.1 blaOXA-798 | |
| 1495 Protein Added: WP_136512090.1 blaOXA-799 | |
| 1496 Protein Added: WP_136512091.1 blaOXA-800 | |
| 1497 Protein Added: WP_136512092.1 blaOXA-801 | |
| 1498 Protein Added: WP_136512093.1 blaOXA-802 | |
| 1499 Protein Added: WP_136512094.1 blaOXA-803 | |
| 1500 Protein Added: WP_136512095.1 blaOXA-804 | |
| 1501 Protein Added: WP_136512096.1 blaOXA-805 | |
| 1502 Protein Added: WP_136512097.1 blaOXA-806 | |
| 1503 Protein Added: WP_136512098.1 blaOXA-807 | |
| 1504 Protein Added: WP_136512099.1 blaOXA-808 | |
| 1505 Protein Added: WP_136512100.1 blaOXA-809 | |
| 1506 Protein Added: WP_136512101.1 blaOXA-810 | |
| 1507 Protein Added: WP_136512102.1 blaOXA-811 | |
| 1508 Protein Added: WP_136512103.1 blaOXA-823 | |
| 1509 Protein Added: WP_136512104.1 blaOXA-824 | |
| 1510 Protein Added: WP_136512105.1 blaPER-13 | |
| 1511 Protein Added: WP_136512106.1 blaVIM-48 | |
| 1512 Protein Added: WP_136512107.1 blaVIM-55 | |
| 1513 Protein Added: WP_136512108.1 blaVIM-63 | |
| 1514 Protein Added: WP_136512109.1 blaVIM-66 | |
| 1515 Protein Added: WP_136512110.1 mcr-1.16 | |
| 1516 Protein Added: WP_136512111.1 mcr-1.17 | |
| 1517 Protein Added: WP_136512112.1 mcr-3.29 | |
| 1518 Protein Modified: WP_001031075.1 dfr18 updated to WP_001031075.1 dfrA18 | |
| 1519 Protein Modified: WP_032490189.1 dfrA18 updated to WP_032490189.1 dfrA19 | |
| 1520 Protein Modified: WP_063843245.1 chrB updated to WP_063843245.1 chrB_rRNA_meth | |
| 1521 - AMR HMM library Changes: | |
| 1522 Prev. Release: 571 | |
| 1523 This Release: 574 | |
| 1524 Removed: 0 | |
| 1525 Added: 3 | |
| 1526 Changed: 571 | |
| 1527 HMM Added: NF033818.0 blaOXA-114_like | |
| 1528 HMM Added: NF033836.1 polymyxin_MCR9 | |
| 1529 HMM Added: NF033851.1 trim_DfrA35 | |
| 1530 HMM Modified: NF000039.1 trim_Dfr18 renamed to NF000039.1 trim_DfrA18 | |
| 1531 HMM Modified: NF000041.1 trim_DfrA18_A19 renamed to NF000041.1 trim_DfrA19 | |
| 1532 HMM Modified: NF000422.2 blaPDC updated to NF000422.6 blaPDC | |
| 1533 - Protein family changes: | |
| 1534 Prev. Release: 1177 | |
| 1535 This Release: 1119 | |
| 1536 Removed: 68 | |
| 1537 Added: 10 | |
| 1538 Modified: 4 | |
| 1539 Family Removed: - PORIN | |
| 1540 Family Removed: - aac(1) | |
| 1541 Family Removed: - aac(3')-IIe | |
| 1542 Family Removed: - aac(3)-Ie | |
| 1543 Family Removed: - aac(3)-VI | |
| 1544 Family Removed: - aac(3)-Vb | |
| 1545 Family Removed: - aac(6')-Ib8 | |
| 1546 Family Removed: - aacA44 | |
| 1547 Family Removed: - aadA1bt | |
| 1548 Family Removed: - aadA1r | |
| 1549 Family Removed: - aadA24 | |
| 1550 Family Removed: - ampC_Eae | |
| 1551 Family Removed: - ampH | |
| 1552 Family Removed: - ampS | |
| 1553 Family Removed: - ant(3'')(9) | |
| 1554 Family Removed: - ant(3'')-Ii | |
| 1555 Family Removed: - aph(3')-Ic | |
| 1556 Family Removed: - arr-Cb | |
| 1557 Family Removed: - blaCMG | |
| 1558 Family Removed: - blaKLUG | |
| 1559 Family Removed: - blaLMB | |
| 1560 Family Removed: - blaMSI-OXA | |
| 1561 Family Removed: - blaOXA_missing | |
| 1562 Family Removed: - blaPNGM | |
| 1563 Family Removed: - blaZEG | |
| 1564 Family Removed: - blmS | |
| 1565 Family Removed: - catA12 | |
| 1566 Family Removed: - ccrA | |
| 1567 Family Removed: NF000488.1 chrB | |
| 1568 Family Removed: - cml | |
| 1569 Family Removed: - cmlA7 | |
| 1570 Family Removed: - cmlA9 | |
| 1571 Family Removed: NF000039.1 dfr18 | |
| 1572 Family Removed: NF000041.1 dfrA18_dfrA19 | |
| 1573 Family Removed: - dfrA1_var | |
| 1574 Family Removed: - dfrA29 | |
| 1575 Family Removed: - dfrA33 | |
| 1576 Family Removed: - dfrB7 | |
| 1577 Family Removed: - flo | |
| 1578 Family Removed: - mef(E) | |
| 1579 Family Removed: - mef(G) | |
| 1580 Family Removed: - mef(I) | |
| 1581 Family Removed: - mph(D) | |
| 1582 Family Removed: - nimF | |
| 1583 Family Removed: - nimH | |
| 1584 Family Removed: - omp35 | |
| 1585 Family Removed: - ompE35 | |
| 1586 Family Removed: - otr(C) | |
| 1587 Family Removed: - penA | |
| 1588 Family Removed: - sat2A | |
| 1589 Family Removed: - sat3A | |
| 1590 Family Removed: - spc | |
| 1591 Family Removed: - sul1delta | |
| 1592 Family Removed: - vanH-Ac2 | |
| 1593 Family Removed: - vanH-F | |
| 1594 Family Removed: - vanR-Pt | |
| 1595 Family Removed: - vanR-Pt2 | |
| 1596 Family Removed: - vanS-I | |
| 1597 Family Removed: - vanSc | |
| 1598 Family Removed: - vanTc4 | |
| 1599 Family Removed: - vanX-Ac2 | |
| 1600 Family Removed: - vanX-F | |
| 1601 Family Removed: - vanX-Pt2 | |
| 1602 Family Removed: - vanY-40021673 | |
| 1603 Family Removed: - vanY-D4 | |
| 1604 Family Removed: - vanY-D5 | |
| 1605 Family Removed: - vanY-M | |
| 1606 Family Removed: - vanY-Pt2 | |
| 1607 Family Added: NF033818.0 blaOXA-114_like | |
| 1608 Family Added: NF033851.1 dfrA35 | |
| 1609 Family Added: NF033124.1 estX | |
| 1610 Family Added: NF033836.1 mcr-9 | |
| 1611 Family Added: - satA_Bs | |
| 1612 Family Added: - sulR | |
| 1613 Family Added: - sulX | |
| 1614 Family Changed: NF000422.2 blaPDC updated to NF000422.6 blaPDC | |
| 1615 Family Changed: NF000488.1 chrB renamed to chrB_rRNA_meth | |
| 1616 Family Changed: NF000039.1 dfr18 renamed to dfrA18 | |
| 1617 Family Changed: NF000041.1 dfrA18_dfrA19 renamed to dfrA19 | |
| 1618 --------------------------------------------------------------------- | |
| 1619 Changes included in 2019-02-08.1 | |
| 1620 --------------------------------------------------------------------- | |
| 1621 | |
| 1622 Two incorrectly assigned proteins were accidentally released. They are not | |
| 1623 AMR proteins and should not have been released. This release simply removes | |
| 1624 them and is otherwise unchanged. | |
| 1625 | |
| 1626 - Protein changes: | |
| 1627 Prev. Release: 4812 | |
| 1628 This Release: 4810 | |
| 1629 Removed: 2 | |
| 1630 Added: 0 | |
| 1631 Changed: 4810 | |
| 1632 Protein Removed: WP_000122253.1 sat | |
| 1633 Protein Removed: WP_001045652.1 sat | |
| 1634 --------------------------------------------------------------------- | |
| 1635 Changes included in 2019-02-04.1 | |
| 1636 --------------------------------------------------------------------- | |
| 1637 - Protein name changes: | |
| 1638 "inhibitor-resistant" was added to the names of: | |
| 1639 blaKPC-8 | |
| 1640 blaKPC-30 | |
| 1641 blaKPC-31 | |
| 1642 blaKPC-32 | |
| 1643 blaKPC-33 | |
| 1644 - Protein changes: | |
| 1645 Prev. Release: 4730 | |
| 1646 This Release: 4812 | |
| 1647 Removed: 0 | |
| 1648 Added: 82 | |
| 1649 Protein modified: WP_063855700.1 tet(35) replaced with WP_005480402.1 | |
| 1650 Protein Added: WP_000122253.1 sat | |
| 1651 Protein Added: WP_001045652.1 sat | |
| 1652 Protein Added: WP_002415638.1 poxtA | |
| 1653 Protein Added: WP_003234144.1 vmlR | |
| 1654 Protein Added: WP_029728367.1 blaB | |
| 1655 Protein Added: WP_044103626.1 blaVEB-21 | |
| 1656 Protein Added: WP_046693238.1 blaADC-181 | |
| 1657 Protein Added: WP_049637206.1 blaOXA-780 | |
| 1658 Protein Added: WP_057691114.1 blaADC-182 | |
| 1659 Protein Added: WP_058492019.1 vanI | |
| 1660 Protein Added: WP_065980086.1 blaOXA-784 | |
| 1661 Protein Added: WP_069953510.1 blaAFM-1 | |
| 1662 Protein Added: WP_069996660.1 mecC3 | |
| 1663 Protein Added: WP_071223118.1 taeA | |
| 1664 Protein Added: WP_087343787.1 ant(6)-Ic | |
| 1665 Protein Added: WP_087344360.1 blaBBI | |
| 1666 Protein Added: WP_087344902.1 catV | |
| 1667 Protein Added: WP_087346196.1 ant(4')-Ic | |
| 1668 Protein Added: WP_087347987.1 rphC | |
| 1669 Protein Added: WP_087348261.1 rphD | |
| 1670 Protein Added: WP_087349244.1 mphJ | |
| 1671 Protein Added: WP_087349651.1 aac(6')-35 | |
| 1672 Protein Added: WP_114225343.1 blaOXA-739 | |
| 1673 Protein Added: WP_123002100.1 blaGES-40 | |
| 1674 Protein Added: WP_123002101.1 blaKPC-38 | |
| 1675 Protein Added: WP_123002102.1 blaNDM-27 | |
| 1676 Protein Added: WP_123002103.1 blaVIM-61 | |
| 1677 Protein Added: WP_126205827.1 blaOXA-785 | |
| 1678 Protein Added: WP_127728991.1 blaFRI-6 | |
| 1679 Protein Added: WP_128268231.1 mecC2 | |
| 1680 Protein Added: WP_128268232.1 blaADC-183 | |
| 1681 Protein Added: WP_128268233.1 blaCARB-50 | |
| 1682 Protein Added: WP_128268234.1 blaCFE-2 | |
| 1683 Protein Added: WP_128268235.1 blaCTX-M-215 | |
| 1684 Protein Added: WP_128268236.1 blaDHA-28 | |
| 1685 Protein Added: WP_128268237.1 blaKPC-39 | |
| 1686 Protein Added: WP_128268238.1 blaOXA-738 | |
| 1687 Protein Added: WP_128268239.1 blaOXA-740 | |
| 1688 Protein Added: WP_128268240.1 blaOXA-741 | |
| 1689 Protein Added: WP_128268241.1 blaOXA-742 | |
| 1690 Protein Added: WP_128268242.1 blaOXA-743 | |
| 1691 Protein Added: WP_128268243.1 blaOXA-744 | |
| 1692 Protein Added: WP_128268244.1 blaOXA-745 | |
| 1693 Protein Added: WP_128268245.1 blaOXA-746 | |
| 1694 Protein Added: WP_128268246.1 blaOXA-747 | |
| 1695 Protein Added: WP_128268247.1 blaOXA-748 | |
| 1696 Protein Added: WP_128268248.1 blaOXA-749 | |
| 1697 Protein Added: WP_128268249.1 blaOXA-750 | |
| 1698 Protein Added: WP_128268250.1 blaOXA-751 | |
| 1699 Protein Added: WP_128268251.1 blaOXA-752 | |
| 1700 Protein Added: WP_128268252.1 blaOXA-753 | |
| 1701 Protein Added: WP_128268253.1 blaOXA-754 | |
| 1702 Protein Added: WP_128268254.1 blaOXA-755 | |
| 1703 Protein Added: WP_128268255.1 blaOXA-756 | |
| 1704 Protein Added: WP_128268256.1 blaOXA-757 | |
| 1705 Protein Added: WP_128268257.1 blaOXA-758 | |
| 1706 Protein Added: WP_128268258.1 blaOXA-759 | |
| 1707 Protein Added: WP_128268259.1 blaOXA-760 | |
| 1708 Protein Added: WP_128268260.1 blaOXA-761 | |
| 1709 Protein Added: WP_128268261.1 blaOXA-762 | |
| 1710 Protein Added: WP_128268262.1 blaOXA-763 | |
| 1711 Protein Added: WP_128268263.1 blaOXA-764 | |
| 1712 Protein Added: WP_128268264.1 blaOXA-765 | |
| 1713 Protein Added: WP_128268265.1 blaOXA-766 | |
| 1714 Protein Added: WP_128268266.1 blaOXA-767 | |
| 1715 Protein Added: WP_128268267.1 blaOXA-768 | |
| 1716 Protein Added: WP_128268268.1 blaOXA-769 | |
| 1717 Protein Added: WP_128268269.1 blaOXA-770 | |
| 1718 Protein Added: WP_128268270.1 blaOXA-771 | |
| 1719 Protein Added: WP_128268271.1 blaOXA-772 | |
| 1720 Protein Added: WP_128268272.1 blaOXA-773 | |
| 1721 Protein Added: WP_128268273.1 blaOXA-774 | |
| 1722 Protein Added: WP_128268274.1 blaOXA-775 | |
| 1723 Protein Added: WP_128268275.1 blaOXA-776 | |
| 1724 Protein Added: WP_128268276.1 blaOXA-781 | |
| 1725 Protein Added: WP_128268277.1 blaOXA-782 | |
| 1726 Protein Added: WP_128268278.1 blaOXA-783 | |
| 1727 Protein Added: WP_128268279.1 blaOXA-786 | |
| 1728 Protein Added: WP_128268280.1 blaPDC-317 | |
| 1729 Protein Added: WP_128268286.1 blaVEB-20 | |
| 1730 Protein Added: WP_128268287.1 blaVIM-62 | |
| 1731 Protein Added: WP_128268288.1 qnrS15 | |
| 1732 - AMR HMM library Changes: | |
| 1733 Prev. Release: 568 | |
| 1734 This Release: 571 | |
| 1735 Removed: 0 | |
| 1736 Added: 3 | |
| 1737 HMM Added: NF033714.1 blaBBI | |
| 1738 HMM Added: NF033736.1 blaAFM | |
| 1739 HMM Added: NF033815.0 blaOXA-364_like | |
| 1740 HMM Modified: NF000355.2 ribo_prot_ABC_F updated to NF000355.3 ribo_prot_ABC_F | |
| 1741 - Protein family changes: | |
| 1742 Prev. Release: 1161 | |
| 1743 This Release: 1177 | |
| 1744 Removed: 0 | |
| 1745 Added: 16 | |
| 1746 Family Added: - aac(6')-35 | |
| 1747 Family Added: - ant(4')-Ic | |
| 1748 Family Added: - ant(6)-Ic | |
| 1749 Family Added: NF033736.1 blaAFM | |
| 1750 Family Added: NF033714.1 blaBBI | |
| 1751 Family Added: NF033815.0 blaOXA-364_like | |
| 1752 Family Added: - mecC2 | |
| 1753 Family Added: - mecC3 | |
| 1754 Family Added: - mphJ | |
| 1755 Family Added: - poxtA | |
| 1756 Family Added: - rphC | |
| 1757 Family Added: - rphD | |
| 1758 Family Added: - rph_gen | |
| 1759 Family Added: - satA_Ba | |
| 1760 Family Added: - taeA | |
| 1761 Family Added: - vmlR | |
| 1762 Family Changed: NF000355.2 abc-f updated to NF000355.3 abc-f | |
| 1763 | |
| 1764 --------------------------------------------------------------------- | |
| 1765 Changes included in 2018-11-07.1 | |
| 1766 --------------------------------------------------------------------- | |
| 1767 | |
| 1768 Due to a communication error three blaOXA alleles in the AMR database have | |
| 1769 been reassigned. Alleles published by Tian, et al. (PMID:30247543) have | |
| 1770 replaced them. | |
| 1771 | |
| 1772 AFY12006.1 JX846494.1 WP_072678505.1 NG_061615.1 were blaOXA-669, now they are blaOXA-732 | |
| 1773 AAL47570.1 AY066004.1 WP_114699266.1 NG_061383.1 were blaOXA-666, now they are blaOXA-729 | |
| 1774 AXH06203.1 MH684781.1 WP_116786836.1 NG_061623.1 were blaOXA-667, now they are blaOXA-730 | |
| 1775 | |
| 1776 - Protein changes: | |
| 1777 Prev. Release: 4579 | |
| 1778 This Release: 4730 | |
| 1779 Removed: 0 | |
| 1780 Added: 151 | |
| 1781 Protein Added: WP_004143591.1 blaSHV-206 | |
| 1782 Protein Added: WP_004384957.1 blaCSA-2 | |
| 1783 Protein Added: WP_007888761.1 blaCSA-1 | |
| 1784 Protein Added: WP_011245929.1 clbB | |
| 1785 Protein Added: WP_011707905.1 blaOXA-725 | |
| 1786 Protein Added: WP_012116915.1 clbA | |
| 1787 Protein Added: WP_015892743.1 clbC | |
| 1788 Protein Added: WP_016162389.1 blaOXA-673 | |
| 1789 Protein Added: WP_016168805.1 blaOXA-664 | |
| 1790 Protein Added: WP_016651348.1 blaOXA-670 | |
| 1791 Protein Added: WP_016657654.1 blaOXA-665 | |
| 1792 Protein Added: WP_016660101.1 blaOXA-671 | |
| 1793 Protein Added: WP_016685888.1 blaOXA-715 | |
| 1794 Protein Added: WP_017822040.1 qnrVC10 | |
| 1795 Protein Added: WP_023271137.1 blaOXA-672 | |
| 1796 Protein Added: WP_023341517.1 blaSHV-211 | |
| 1797 Protein Added: WP_031998610.1 blaOXA-716 | |
| 1798 Protein Added: WP_032018141.1 blaOXA-717 | |
| 1799 Protein Added: WP_032495491.1 blaKLUC-3 | |
| 1800 Protein Added: WP_032495492.1 blaKLUC-4 | |
| 1801 Protein Added: WP_032974004.1 blaCMA-1 | |
| 1802 Protein Added: WP_033179079.1 crpP | |
| 1803 Protein Added: WP_034612711.1 blaOXA-668 | |
| 1804 Protein Added: WP_056517622.1 blaOXA-669 | |
| 1805 Protein Added: WP_057097547.1 aph(2'')-If2 | |
| 1806 Protein Added: WP_058652112.1 dfrA34 | |
| 1807 Protein Added: WP_064733493.1 blaSHV-207 | |
| 1808 Protein Added: WP_064760451.1 qepA4 | |
| 1809 Protein Added: WP_064768701.1 qepA7 | |
| 1810 Protein Added: WP_077096319.1 blaOXA-724 | |
| 1811 Protein Added: WP_081406929.1 blaOXA-674 | |
| 1812 Protein Added: WP_081853183.1 blaELM-1 | |
| 1813 Protein Added: WP_092689909.1 blaOXA-666 | |
| 1814 Protein Added: WP_094166899.1 blaCTX-M-224 | |
| 1815 Protein Added: WP_096735335.1 blaOXA-667 | |
| 1816 Protein Added: WP_096941464.1 qepA6 | |
| 1817 Protein Added: WP_100663667.1 blaKLUC-5 | |
| 1818 Protein Added: WP_101150415.1 blaOXA-726 | |
| 1819 Protein Added: WP_104159136.1 blaSHV-224 | |
| 1820 Protein Added: WP_105620838.1 blaCMA-2 | |
| 1821 Protein Added: WP_109232473.1 blaSHV-220 | |
| 1822 Protein Added: WP_109638756.1 qepA8 | |
| 1823 Protein Added: WP_112021705.1 qepA9 | |
| 1824 Protein Added: WP_113334341.1 qepA10 | |
| 1825 Protein Added: WP_115196748.1 blaSHV-210 | |
| 1826 Protein Added: WP_117241614.1 blaSHV-223 | |
| 1827 Protein Added: WP_122630822.1 blaEFM-1 | |
| 1828 Protein Added: WP_122630823.1 blaEVM-1 | |
| 1829 Protein Added: WP_122630824.1 blaECM-1 | |
| 1830 Protein Added: WP_122630825.1 blaEAM-1 | |
| 1831 Protein Added: WP_122630826.1 blaGES-38 | |
| 1832 Protein Added: WP_122630827.1 blaGES-39 | |
| 1833 Protein Added: WP_122630828.1 blaVIM-53 | |
| 1834 Protein Added: WP_122630829.1 blaDHT2-1 | |
| 1835 Protein Added: WP_122630830.1 blaSPN79-1 | |
| 1836 Protein Added: WP_122630831.1 blaCRD3-1 | |
| 1837 Protein Added: WP_122630832.1 blaALG6-1 | |
| 1838 Protein Added: WP_122630833.1 blaALG11-1 | |
| 1839 Protein Added: WP_122630834.1 blaGRD33-1 | |
| 1840 Protein Added: WP_122630835.1 blaGRD23-1 | |
| 1841 Protein Added: WP_122630836.1 blaCMY-158 | |
| 1842 Protein Added: WP_122630837.1 blaCMY-159 | |
| 1843 Protein Added: WP_122630838.1 blaSHV-201 | |
| 1844 Protein Added: WP_122630839.1 blaSHV-202 | |
| 1845 Protein Added: WP_122630840.1 aph(2'') | |
| 1846 Protein Added: WP_122630841.1 blaTEM-237 | |
| 1847 Protein Added: WP_122630842.1 blaOXA-655 | |
| 1848 Protein Added: WP_122630843.1 blaOXA-656 | |
| 1849 Protein Added: WP_122630844.1 blaOXA-733 | |
| 1850 Protein Added: WP_122630845.1 blaPDC-307 | |
| 1851 Protein Added: WP_122630846.1 blaPDC-308 | |
| 1852 Protein Added: WP_122630847.1 blaPDC-309 | |
| 1853 Protein Added: WP_122630848.1 blaPDC-310 | |
| 1854 Protein Added: WP_122630849.1 blaPDC-311 | |
| 1855 Protein Added: WP_122630850.1 blaPDC-312 | |
| 1856 Protein Added: WP_122630851.1 blaPDC-313 | |
| 1857 Protein Added: WP_122630852.1 blaPDC-314 | |
| 1858 Protein Added: WP_122630853.1 blaOXA-734 | |
| 1859 Protein Added: WP_122630854.1 blaOXA-735 | |
| 1860 Protein Added: WP_122630855.1 blaOXA-736 | |
| 1861 Protein Added: WP_122630856.1 blaOXA-737 | |
| 1862 Protein Added: WP_122630857.1 blaOXA-675 | |
| 1863 Protein Added: WP_122630858.1 blaOXA-676 | |
| 1864 Protein Added: WP_122630859.1 blaOXA-677 | |
| 1865 Protein Added: WP_122630860.1 blaOXA-678 | |
| 1866 Protein Added: WP_122630861.1 blaIMP-80 | |
| 1867 Protein Added: WP_122630862.1 blaCTX-M-223 | |
| 1868 Protein Added: WP_122630863.1 blaSHV-205 | |
| 1869 Protein Added: WP_122630864.1 blaOXA-680 | |
| 1870 Protein Added: WP_122630865.1 blaSHV-208 | |
| 1871 Protein Added: WP_122630866.1 blaSHV-209 | |
| 1872 Protein Added: WP_122630867.1 blaSHV-212 | |
| 1873 Protein Added: WP_122630868.1 blaSHV-213 | |
| 1874 Protein Added: WP_122630869.1 blaSHV-214 | |
| 1875 Protein Added: WP_122630870.1 blaSHV-215 | |
| 1876 Protein Added: WP_122630871.1 blaSHV-216 | |
| 1877 Protein Added: WP_122630872.1 blaSHV-217 | |
| 1878 Protein Added: WP_122630873.1 blaSHV-218 | |
| 1879 Protein Added: WP_122630874.1 blaSHV-219 | |
| 1880 Protein Added: WP_122630875.1 blaSHV-221 | |
| 1881 Protein Added: WP_122630876.1 blaSHV-222 | |
| 1882 Protein Added: WP_122630877.1 blaSHV-225 | |
| 1883 Protein Added: WP_122630878.1 blaSHV-226 | |
| 1884 Protein Added: WP_122630879.1 blaSHV-227 | |
| 1885 Protein Added: WP_122630880.1 blaSHV-228 | |
| 1886 Protein Added: WP_122630881.1 blaOXA-681 | |
| 1887 Protein Added: WP_122630882.1 blaPDC-315 | |
| 1888 Protein Added: WP_122630883.1 blaPDC-316 | |
| 1889 Protein Added: WP_122630884.1 blaOXA-682 | |
| 1890 Protein Added: WP_122630885.1 blaOXA-683 | |
| 1891 Protein Added: WP_122630886.1 blaOXA-684 | |
| 1892 Protein Added: WP_122630887.1 blaOXA-685 | |
| 1893 Protein Added: WP_122630888.1 blaOXA-686 | |
| 1894 Protein Added: WP_122630889.1 blaOXA-687 | |
| 1895 Protein Added: WP_122630890.1 blaOXA-688 | |
| 1896 Protein Added: WP_122630891.1 blaOXA-689 | |
| 1897 Protein Added: WP_122630892.1 blaOXA-690 | |
| 1898 Protein Added: WP_122630893.1 blaOXA-691 | |
| 1899 Protein Added: WP_122630894.1 blaOXA-692 | |
| 1900 Protein Added: WP_122630895.1 blaOXA-693 | |
| 1901 Protein Added: WP_122630896.1 blaOXA-694 | |
| 1902 Protein Added: WP_122630897.1 blaOXA-695 | |
| 1903 Protein Added: WP_122630898.1 blaOXA-696 | |
| 1904 Protein Added: WP_122630899.1 blaOXA-697 | |
| 1905 Protein Added: WP_122630900.1 blaOXA-698 | |
| 1906 Protein Added: WP_122630901.1 blaOXA-699 | |
| 1907 Protein Added: WP_122630902.1 blaOXA-700 | |
| 1908 Protein Added: WP_122630903.1 blaOXA-701 | |
| 1909 Protein Added: WP_122630904.1 blaOXA-702 | |
| 1910 Protein Added: WP_122630905.1 blaOXA-703 | |
| 1911 Protein Added: WP_122630906.1 blaOXA-704 | |
| 1912 Protein Added: WP_122630907.1 blaOXA-705 | |
| 1913 Protein Added: WP_122630908.1 blaOXA-706 | |
| 1914 Protein Added: WP_122630909.1 blaOXA-707 | |
| 1915 Protein Added: WP_122630910.1 blaOXA-718 | |
| 1916 Protein Added: WP_122630911.1 blaOXA-719 | |
| 1917 Protein Added: WP_122630912.1 blaOXA-720 | |
| 1918 Protein Added: WP_122630913.1 blaOXA-721 | |
| 1919 Protein Added: WP_122630914.1 blaOXA-722 | |
| 1920 Protein Added: WP_122630915.1 blaOXA-723 | |
| 1921 Protein Added: WP_122630916.1 blaOXA-708 | |
| 1922 Protein Added: WP_122630917.1 blaOXA-709 | |
| 1923 Protein Added: WP_122630918.1 blaOXA-710 | |
| 1924 Protein Added: WP_122630919.1 blaOXA-711 | |
| 1925 Protein Added: WP_122630920.1 blaOXA-712 | |
| 1926 Protein Added: WP_122630921.1 blaOXA-713 | |
| 1927 Protein Added: WP_122630922.1 blaOXA-714 | |
| 1928 Protein Added: WP_122630923.1 blaOXA-777 | |
| 1929 Protein Added: WP_122630924.1 blaOXA-778 | |
| 1930 Protein Added: WP_122634438.1 blaOXA-779 | |
| 1931 Protein Added: WP_122634439.1 blaOXA-679 | |
| 1932 Gene Symbol Modified: WP_010890145.1 qacE_gen updated to WP_010890145.1 qacE | |
| 1933 Gene Symbol Modified: WP_053515552.1 qacE_gen updated to WP_053515552.1 qacE | |
| 1934 Gene Symbol Modified: WP_063844281.1 cphA updated to WP_063844281.1 cphA3 | |
| 1935 Gene Symbol Modified: WP_063854778.1 qepA updated to WP_063854778.1 qepA5 | |
| 1936 Gene Symbol Modified: WP_072678505.1 blaOXA-669 updated to WP_072678505.1 blaOXA-732 | |
| 1937 Gene Symbol Modified: WP_114699266.1 blaOXA-666 updated to WP_114699266.1 blaOXA-729 | |
| 1938 Gene Symbol Modified: WP_116786836.1 blaOXA-667 updated to WP_116786836.1 blaOXA-730 | |
| 1939 - AMR HMM library Changes: | |
| 1940 Prev. Release: 563 | |
| 1941 This Release: 568 | |
| 1942 Removed: 0 | |
| 1943 Added: 5 | |
| 1944 HMM Added: NF033692.1 APH_2pp_I_a_f_h | |
| 1945 HMM Added: NF033693.0 AAC_6p_Ie_fam | |
| 1946 HMM Added: NF033698.1 blaCSA | |
| 1947 HMM Added: NF033700.1 blaCMA | |
| 1948 HMM Added: NF033702.0 blaOXA-12_like | |
| 1949 HMM Name Modified: NF033666.1 blaOXA-664_like updated to NF033666.1 blaOXA-727_like | |
| 1950 - Protein family changes: | |
| 1951 Prev. Release: 1133 | |
| 1952 This Release: 1161 | |
| 1953 Removed: 0 | |
| 1954 Added: 28 | |
| 1955 Family Added: - aac(6')-Ie2 | |
| 1956 Family Added: NF033693.0 aac(6')-Ie_fam | |
| 1957 Family Added: NF011706.2 acrB | |
| 1958 Family Added: NF007842.1 acrD | |
| 1959 Family Added: NF000314.1 adeB/adeJ | |
| 1960 Family Added: NF033692.1 aph(2'')-I_a_f_h | |
| 1961 Family Added: - aph(2'')-If2 | |
| 1962 Family Added: - blaALG11 | |
| 1963 Family Added: - blaALG6 | |
| 1964 Family Added: NF033700.1 blaCMA | |
| 1965 Family Added: - blaCRD3 | |
| 1966 Family Added: NF033698.1 blaCSA | |
| 1967 Family Added: - blaCrA | |
| 1968 Family Added: - blaDHT2 | |
| 1969 Family Added: - blaEAM | |
| 1970 Family Added: - blaECM | |
| 1971 Family Added: - blaEFM | |
| 1972 Family Added: - blaELM | |
| 1973 Family Added: - blaEVM | |
| 1974 Family Added: - blaGRD23 | |
| 1975 Family Added: - blaGRD33 | |
| 1976 Family Added: NF033702.0 blaOXA-12_like | |
| 1977 Family Added: - blaPNGM | |
| 1978 Family Added: - blaSPN79 | |
| 1979 Family Added: - catV | |
| 1980 Family Added: - crpP | |
| 1981 Family Added: - dfrA34 | |
| 1982 Family Added: - qacE | |
| 1983 Family Renamed: NF033666.1 blaOXA-664_like became blaOXA-727_like | |
| 1984 | |
| 1985 --------------------------------------------------------------------- | |
| 1986 Changes included in 2018-09-14.1 | |
| 1987 ---------------------------------------------------------------------- | |
| 1988 - Protein changes: | |
| 1989 Prev. Release: 4569 | |
| 1990 This Release: 4579 | |
| 1991 Removed: 0 | |
| 1992 Added: 10 | |
| 1993 Protein Added: WP_116786828.1 mcr-4.6 | |
| 1994 Protein Added: WP_116786829.1 blaCTX-M-222 | |
| 1995 Protein Added: WP_116786830.1 mcr-1.15 | |
| 1996 Protein Added: WP_116786831.1 blaTEM-236 | |
| 1997 Protein Added: WP_116786832.1 blaKPC-37 | |
| 1998 Protein Added: WP_116786834.1 blaPDC-304 | |
| 1999 Protein Added: WP_116786836.1 blaOXA-667 | |
| 2000 Protein Added: WP_116786837.1 blaPDC-305 | |
| 2001 Protein Added: WP_116786838.1 blaPDC-306 | |
| 2002 Protein Added: WP_116786839.1 blaIMP-79 | |
| 2003 - AMR HMM library Changes: | |
| 2004 Prev. Release: 563 | |
| 2005 This Release: 563 | |
| 2006 Removed: 0 | |
| 2007 Added: 0 | |
| 2008 - Protein family changes: | |
| 2009 Prev. Release: 1133 | |
| 2010 This Release: 1133 | |
| 2011 Removed: 0 | |
| 2012 Added: 0 | |
| 2013 | |
| 2014 --------------------------------------------------------------------- | |
| 2015 Changes included in 2018-08-24.1 | |
| 2016 --------------------------------------------------------------------- | |
| 2017 - Protein changes: | |
| 2018 Prev. Release: 4563 | |
| 2019 This Release: 4569 | |
| 2020 Removed: 1 | |
| 2021 Added: 7 | |
| 2022 Protein Removed: WP_063843217.1 catA1 | |
| 2023 Protein Added: WP_003436401.1 vanR-Cd | |
| 2024 Protein Added: WP_009889012.1 vanZ1 | |
| 2025 Protein Added: WP_011861275.1 vanS-Cd | |
| 2026 Protein Added: WP_011861276.1 vanG-Cd | |
| 2027 Protein Added: WP_020924773.1 blaAXC-1 | |
| 2028 Protein Added: WP_072310976.1 mcr-8.2 | |
| 2029 Protein Added: WP_072678505.1 blaOXA-669 | |
| 2030 - AMR HMM library Changes: | |
| 2031 Prev. Release: 563 | |
| 2032 This Release: 563 | |
| 2033 Removed: 0 | |
| 2034 Added: 0 | |
| 2035 - Protein family changes: | |
| 2036 Prev. Release: 1128 | |
| 2037 This Release: 1133 | |
| 2038 Removed: 0 | |
| 2039 Added: 5 | |
| 2040 Family Added: - blaAXC | |
| 2041 Family Added: - vanG-Cd | |
| 2042 Family Added: - vanR-Cd | |
| 2043 Family Added: - vanS-Cd | |
| 2044 Family Added: - vanZ1 | |
| 2045 | |
| 2046 --------------------------------------------------------------------- | |
| 2047 Changes included in 2018-08-01.1 | |
| 2048 --------------------------------------------------------------------- | |
| 2049 - Protein changes: | |
| 2050 Prev. Release: 4528 | |
| 2051 This Release: 4563 | |
| 2052 Removed: 0 | |
| 2053 Added: 35 | |
| 2054 Protein Added: WP_000622776.1 qacA | |
| 2055 Protein Added: WP_001159761.1 blaADC-176 | |
| 2056 Protein Added: WP_001211208.1 blaADC-175 | |
| 2057 Protein Added: WP_010730188.1 qacZ | |
| 2058 Protein Added: WP_013095270.1 blaCMH-4 | |
| 2059 Protein Added: WP_032410229.1 blaOXA-663 | |
| 2060 Protein Added: WP_033487869.1 blaACT-56 | |
| 2061 Protein Added: WP_046887417.1 blaCMH-5 | |
| 2062 Protein Added: WP_047052637.1 blaACT-55 | |
| 2063 Protein Added: WP_050861789.1 blaACT-64 | |
| 2064 Protein Added: WP_070210118.1 blaOXA-658 | |
| 2065 Protein Added: WP_094935119.1 blaACT-57 | |
| 2066 Protein Added: WP_111772163.1 blaVIM-58 | |
| 2067 Protein Added: WP_111976052.1 blaACT-60 | |
| 2068 Protein Added: WP_112017656.1 blaACT-61 | |
| 2069 Protein Added: WP_112792421.1 blaACT-59 | |
| 2070 Protein Added: WP_114699266.1 blaOXA-666 | |
| 2071 Protein Added: WP_114699267.1 blaKPC-36 | |
| 2072 Protein Added: WP_114699268.1 blaADC-174 | |
| 2073 Protein Added: WP_114699269.1 blaADC-177 | |
| 2074 Protein Added: WP_114699270.1 blaADC-178 | |
| 2075 Protein Added: WP_114699271.1 blaADC-179 | |
| 2076 Protein Added: WP_114699272.1 blaADC-180 | |
| 2077 Protein Added: WP_114699273.1 blaOXA-661 | |
| 2078 Protein Added: WP_114699274.1 blaOXA-662 | |
| 2079 Protein Added: WP_114699275.1 mcr-8.1 | |
| 2080 Protein Added: WP_114699276.1 blaOXA-659 | |
| 2081 Protein Added: WP_114699277.1 blaVIM-60 | |
| 2082 Protein Added: WP_114699278.1 mcr-5.3 | |
| 2083 Protein Added: WP_114699279.1 blaOXA-660 | |
| 2084 Protein Added: WP_114699280.1 blaIMP-76 | |
| 2085 Protein Added: WP_114699281.1 blaIMP-77 | |
| 2086 Protein Added: WP_114699282.1 blaIMP-78 | |
| 2087 Protein Added: WP_114699283.1 blaVIM-59 | |
| 2088 Protein Added: WP_114699284.1 blaCTX-M-221 | |
| 2089 - AMR HMM library Changes: | |
| 2090 Prev. Release: 557 | |
| 2091 This Release: 563 | |
| 2092 Removed: 0 | |
| 2093 Added: 6 | |
| 2094 HMM Added: NF033648.1 blaOXA-274_like | |
| 2095 HMM Added: NF033666.1 blaOXA-664_like | |
| 2096 HMM Added: NF033667.0 blaOXA-55_like | |
| 2097 HMM Added: NF033669.1 polymyxin_MCR8 | |
| 2098 HMM Added: NF033670.1 polymyxin_MCR6 | |
| 2099 HMM Added: NF033671.1 polymyxin_MCR7 | |
| 2100 - Protein family changes: | |
| 2101 Prev. Release: 1123 | |
| 2102 This Release: 1128 | |
| 2103 Removed: 0 | |
| 2104 Added: 5 | |
| 2105 Family Added: - blaOXA-266_fam | |
| 2106 Family Added: NF033648.1 blaOXA-274_like | |
| 2107 Family Added: NF033667.1 blaOXA-55_like | |
| 2108 Family Added: NF033666.1 blaOXA-664_like | |
| 2109 Family Added: NF033669.1 mcr-8 | |
| 2110 HMM Added: mcr-6 updated to NF033670.1 mcr-6 | |
| 2111 HMM Added: mcr-7 updated to NF033671.1 mcr-7 | |
| 2112 | |
| 2113 Updates in 2018-07-07.1 | |
| 2114 - Fix in amr_report.cpp to remove extra field from AMRFinder output | |
| 2115 | |
| 2116 Updates in 2018-06-27.1 | |
| 2117 - Summary: | |
| 2118 - Protein sequences | |
| 2119 - Removed 1 protein sequence | |
| 2120 - Added 290 protein sequences | |
| 2121 - Changed the names of 2 proteins | |
| 2122 - Gene families | |
| 2123 - cfr was reorganized | |
| 2124 - HMM library | |
| 2125 - 58 HMMs not in the AMR family hierarchy were removed. They were not | |
| 2126 used for AMR gene identification so this should have no effect on | |
| 2127 AMRFinder output. | |
| 2128 - The polymyxin_MCR3 HMM was updated | |
| 2129 - Details: | |
| 2130 Protein Removed: WP_063945333.1 aac(6')-IIa | |
| 2131 Protein Added: WP_000131886.1 aac(3)-VIa | |
| 2132 Protein Added: WP_000778180.1 varG | |
| 2133 Protein Added: WP_001100752.1 blaPER-10 | |
| 2134 Protein Added: WP_002812372.1 blaOXA-578 | |
| 2135 Protein Added: WP_002824679.1 blaOXA-595 | |
| 2136 Protein Added: WP_002837769.1 blaOXA-579 | |
| 2137 Protein Added: WP_002857546.1 blaOXA-592 | |
| 2138 Protein Added: WP_002889704.1 blaOXA-591 | |
| 2139 Protein Added: WP_002936877.1 blaOXA-623 | |
| 2140 Protein Added: WP_011339581.1 blaRHO | |
| 2141 Protein Added: WP_011497575.1 blaSHN-1 | |
| 2142 Protein Added: WP_011550565.1 blaMYX-1 | |
| 2143 Protein Added: WP_011638903.1 mcr-4.3 | |
| 2144 Protein Added: WP_012263521.1 mupA | |
| 2145 Protein Added: WP_012541790.1 blaLEN-28 | |
| 2146 Protein Added: WP_012698469.1 blaLHK-7 | |
| 2147 Protein Added: WP_013255389.1 blaSPS-1 | |
| 2148 Protein Added: WP_013992183.1 blaZOG-1 | |
| 2149 Protein Added: WP_014206564.1 blaOXA-642 | |
| 2150 Protein Added: WP_015058260.1 qnrS11 | |
| 2151 Protein Added: WP_015266427.1 blaECV-1 | |
| 2152 Protein Added: WP_015431537.1 blaROB-2 | |
| 2153 Protein Added: WP_015818996.1 blaTTU-1 | |
| 2154 Protein Added: WP_016252988.1 blaPDC-286 | |
| 2155 Protein Added: WP_021018581.1 catB8 | |
| 2156 Protein Added: WP_025006557.1 blaOXA-580 | |
| 2157 Protein Added: WP_026025287.1 blaALI-1 | |
| 2158 Protein Added: WP_031192893.1 aadA31 | |
| 2159 Protein Added: WP_034035338.1 blaPDC-240 | |
| 2160 Protein Added: WP_035203840.1 catA10 | |
| 2161 Protein Added: WP_038333643.1 blaEBR-2 | |
| 2162 Protein Added: WP_038640920.1 qnrB12 | |
| 2163 Protein Added: WP_041079981.1 erm(44)v | |
| 2164 Protein Added: WP_041258349.1 blaFIA-1 | |
| 2165 Protein Added: WP_041385949.1 blaSGM-2 | |
| 2166 Protein Added: WP_041449074.1 blaANA-1 | |
| 2167 Protein Added: WP_043774378.1 catA13 | |
| 2168 Protein Added: WP_043942497.1 blaPST-1 | |
| 2169 Protein Added: WP_044600959.1 blaOXA-594 | |
| 2170 Protein Added: WP_044779552.1 blaOXA-638 | |
| 2171 Protein Added: WP_048236419.1 qnrB85 | |
| 2172 Protein Added: WP_052259183.1 erm(42) | |
| 2173 Protein Added: WP_052781249.1 blaOXA-583 | |
| 2174 Protein Added: WP_052788483.1 blaOXA-611 | |
| 2175 Protein Added: WP_052788887.1 blaOXA-581 | |
| 2176 Protein Added: WP_052794776.1 blaOXA-625 | |
| 2177 Protein Added: WP_052798312.1 blaOXA-609 | |
| 2178 Protein Added: WP_052800105.1 blaOXA-597 | |
| 2179 Protein Added: WP_052803794.1 blaOXA-601 | |
| 2180 Protein Added: WP_052858477.1 blaOXA-637 | |
| 2181 Protein Added: WP_053872444.1 blaOXA-639 | |
| 2182 Protein Added: WP_053921012.1 blaOXA-603 | |
| 2183 Protein Added: WP_057036510.1 blaOXA-629 | |
| 2184 Protein Added: WP_058157026.1 blaPDC-271 | |
| 2185 Protein Added: WP_058174497.1 blaPDC-250 | |
| 2186 Protein Added: WP_058870660.1 blaOXA-651 | |
| 2187 Protein Added: WP_058951457.1 blaOXA-652 | |
| 2188 Protein Added: WP_061193431.1 blaPDC-298 | |
| 2189 Protein Added: WP_064186845.1 qnrS13 | |
| 2190 Protein Added: WP_065597326.1 blaALI-2 | |
| 2191 Protein Added: WP_065801616.1 mcr-3.20 | |
| 2192 Protein Added: WP_065908739.1 qnrB91 | |
| 2193 Protein Added: WP_070233680.1 blaOXA-614 | |
| 2194 Protein Added: WP_070698497.1 blaPDC-278 | |
| 2195 Protein Added: WP_071701819.1 qnrS12 | |
| 2196 Protein Added: WP_071846333.1 aac(6')_Serra | |
| 2197 Protein Added: WP_073669325.1 blaPDC-285 | |
| 2198 Protein Added: WP_075606311.1 blaROB-3 | |
| 2199 Protein Added: WP_078207746.1 qnrE2 | |
| 2200 Protein Added: WP_078318620.1 blaROB-4 | |
| 2201 Protein Added: WP_080699425.1 blaTEM-229 | |
| 2202 Protein Added: WP_081048762.1 blaMYO-1 | |
| 2203 Protein Added: WP_081666691.1 blaLHK-1 | |
| 2204 Protein Added: WP_085843691.1 qnrB95 | |
| 2205 Protein Added: WP_087696200.1 blaOXA-576 | |
| 2206 Protein Added: WP_087879616.1 mcr-3.19 | |
| 2207 Protein Added: WP_088303859.1 blaOXA-624 | |
| 2208 Protein Added: WP_094308975.1 mcr-3.22 | |
| 2209 Protein Added: WP_094312656.1 mcr-3.21 | |
| 2210 Protein Added: WP_094313523.1 mcr-3.23 | |
| 2211 Protein Added: WP_094321595.1 mcr-3.24 | |
| 2212 Protein Added: WP_094963248.1 aadA31 | |
| 2213 Protein Added: WP_096170112.1 qnrS14 | |
| 2214 Protein Added: WP_096865225.1 blaPER-12 | |
| 2215 Protein Added: WP_100831609.1 blaPDC-245 | |
| 2216 Protein Added: WP_103034696.1 blaROB-5 | |
| 2217 Protein Added: WP_103252528.1 mcr-3.25 | |
| 2218 Protein Added: WP_104009831.1 blaPER-11 | |
| 2219 Protein Added: WP_104009832.1 blaPDC-234 | |
| 2220 Protein Added: WP_104009833.1 blaPDC-235 | |
| 2221 Protein Added: WP_104009834.1 blaPDC-236 | |
| 2222 Protein Added: WP_104009835.1 blaPDC-237 | |
| 2223 Protein Added: WP_104009836.1 blaPDC-238 | |
| 2224 Protein Added: WP_104009837.1 blaPDC-239 | |
| 2225 Protein Added: WP_104009838.1 blaPDC-241 | |
| 2226 Protein Added: WP_104009839.1 blaPDC-242 | |
| 2227 Protein Added: WP_104009840.1 blaPDC-243 | |
| 2228 Protein Added: WP_104009841.1 blaPDC-244 | |
| 2229 Protein Added: WP_104009842.1 blaPDC-246 | |
| 2230 Protein Added: WP_104009843.1 blaPDC-247 | |
| 2231 Protein Added: WP_104009844.1 blaPDC-248 | |
| 2232 Protein Added: WP_104009846.1 blaVIM-56 | |
| 2233 Protein Added: WP_104009847.1 blaCTX-M-178 | |
| 2234 Protein Added: WP_104009848.1 blaCTX-M-187 | |
| 2235 Protein Added: WP_104009849.1 blaCMY-156 | |
| 2236 Protein Added: WP_104009850.1 mcr-1.12 | |
| 2237 Protein Added: WP_104009851.1 mcr-7.1 | |
| 2238 Protein Added: WP_104009852.1 blaIMP-71 | |
| 2239 Protein Added: WP_104009853.1 blaOXA-575 | |
| 2240 Protein Added: WP_104009854.1 blaTEM-230 | |
| 2241 Protein Added: WP_104009855.1 blaTEM-231 | |
| 2242 Protein Added: WP_104009856.1 blaPDC-227 | |
| 2243 Protein Added: WP_104009857.1 blaPDC-228 | |
| 2244 Protein Added: WP_104009858.1 blaPDC-229 | |
| 2245 Protein Added: WP_104009859.1 blaPDC-230 | |
| 2246 Protein Added: WP_104009860.1 blaPDC-231 | |
| 2247 Protein Added: WP_104009861.1 blaPDC-232 | |
| 2248 Protein Added: WP_104009862.1 blaPDC-233 | |
| 2249 Protein Added: WP_104531863.1 blaBUT-1 | |
| 2250 Protein Added: WP_104531864.1 blaBUT-2 | |
| 2251 Protein Added: WP_104531865.1 blaLHK-2 | |
| 2252 Protein Added: WP_104531866.1 blaLHK-3 | |
| 2253 Protein Added: WP_104531867.1 blaLHK-4 | |
| 2254 Protein Added: WP_104531868.1 blaLHK-5 | |
| 2255 Protein Added: WP_104531869.1 blaLHK-6 | |
| 2256 Protein Added: WP_106672612.1 blaCMY-150 | |
| 2257 Protein Added: WP_106924209.1 blaCTX-M-213 | |
| 2258 Protein Added: WP_109544237.1 tet(S) | |
| 2259 Protein Added: WP_109545031.1 dfrA14 | |
| 2260 Protein Added: WP_109545032.1 qnrB11 | |
| 2261 Protein Added: WP_109545033.1 vanY-D | |
| 2262 Protein Added: WP_109545034.1 qnrB22 | |
| 2263 Protein Added: WP_109545035.1 qacF | |
| 2264 Protein Added: WP_109545038.1 tet(33) | |
| 2265 Protein Added: WP_109545039.1 blaSTA-1 | |
| 2266 Protein Added: WP_109545040.1 chrB | |
| 2267 Protein Added: WP_109545041.1 aph(3'')-Ib | |
| 2268 Protein Added: WP_109545042.1 blaORR-1 | |
| 2269 Protein Added: WP_109545044.1 blaKPC-34 | |
| 2270 Protein Added: WP_109545045.1 qnrD3 | |
| 2271 Protein Added: WP_109545046.1 qnrB81 | |
| 2272 Protein Added: WP_109545047.1 qnrB82 | |
| 2273 Protein Added: WP_109545048.1 blaOXA-542 | |
| 2274 Protein Added: WP_109545049.1 blaNDM-20 | |
| 2275 Protein Added: WP_109545050.1 blaCRH-2 | |
| 2276 Protein Added: WP_109545051.1 blaCRH-3 | |
| 2277 Protein Added: WP_109545053.1 blaIMP-73 | |
| 2278 Protein Added: WP_109545054.1 mcr-4.5 | |
| 2279 Protein Added: WP_109545055.1 mcr-4.4 | |
| 2280 Protein Added: WP_109545056.1 mcr-1.13 | |
| 2281 Protein Added: WP_109545057.1 mcr-5.2 | |
| 2282 Protein Added: WP_109545058.1 mcr-4.2 | |
| 2283 Protein Added: WP_109545059.1 blaTEM-232 | |
| 2284 Protein Added: WP_109545060.1 blaCTX-M-208 | |
| 2285 Protein Added: WP_109545061.1 blaCTX-M-209 | |
| 2286 Protein Added: WP_109545062.1 blaCTX-M-210 | |
| 2287 Protein Added: WP_109545063.1 blaCTX-M-211 | |
| 2288 Protein Added: WP_109545064.1 blaCTX-M-212 | |
| 2289 Protein Added: WP_109545065.1 blaCMY-161 | |
| 2290 Protein Added: WP_109545066.1 blaFOX-16 | |
| 2291 Protein Added: WP_109545067.1 blaDHA-27 | |
| 2292 Protein Added: WP_109545068.1 blaDHA-26 | |
| 2293 Protein Added: WP_109545069.1 blaCTX-M-214 | |
| 2294 Protein Added: WP_109545070.1 mcr-3.12 | |
| 2295 Protein Added: WP_109545071.1 blaOXA-649 | |
| 2296 Protein Added: WP_109545072.1 blaOXA-641 | |
| 2297 Protein Added: WP_109545073.1 blaFRI-5 | |
| 2298 Protein Added: WP_109545074.1 blaGPC-1 | |
| 2299 Protein Added: WP_109545075.1 blaOXA-619 | |
| 2300 Protein Added: WP_109545076.1 blaOXA-620 | |
| 2301 Protein Added: WP_109545077.1 blaOXA-636 | |
| 2302 Protein Added: WP_109545078.1 blaOXA-635 | |
| 2303 Protein Added: WP_109545079.1 blaOXA-631 | |
| 2304 Protein Added: WP_109545080.1 blaOXA-626 | |
| 2305 Protein Added: WP_109545081.1 blaOXA-627 | |
| 2306 Protein Added: WP_109545082.1 blaOXA-633 | |
| 2307 Protein Added: WP_109545083.1 blaOXA-628 | |
| 2308 Protein Added: WP_109545084.1 blaOXA-634 | |
| 2309 Protein Added: WP_109545085.1 blaOXA-630 | |
| 2310 Protein Added: WP_109545086.1 blaOXA-632 | |
| 2311 Protein Added: WP_109545087.1 blaOXA-608 | |
| 2312 Protein Added: WP_109545088.1 blaOXA-584 | |
| 2313 Protein Added: WP_109545089.1 blaOXA-585 | |
| 2314 Protein Added: WP_109545090.1 blaOXA-586 | |
| 2315 Protein Added: WP_109545091.1 blaOXA-577 | |
| 2316 Protein Added: WP_109545092.1 blaOXA-587 | |
| 2317 Protein Added: WP_109545093.1 blaOXA-596 | |
| 2318 Protein Added: WP_109545094.1 blaOXA-600 | |
| 2319 Protein Added: WP_109545095.1 blaOXA-588 | |
| 2320 Protein Added: WP_109545096.1 blaOXA-589 | |
| 2321 Protein Added: WP_109545097.1 blaOXA-593 | |
| 2322 Protein Added: WP_109545098.1 blaOXA-599 | |
| 2323 Protein Added: WP_109545099.1 blaOXA-610 | |
| 2324 Protein Added: WP_109545100.1 blaOXA-612 | |
| 2325 Protein Added: WP_109545101.1 blaOXA-598 | |
| 2326 Protein Added: WP_109545102.1 blaOXA-607 | |
| 2327 Protein Added: WP_109545103.1 blaOXA-590 | |
| 2328 Protein Added: WP_109545104.1 blaOXA-604 | |
| 2329 Protein Added: WP_109545105.1 blaOXA-602 | |
| 2330 Protein Added: WP_109545106.1 blaOXA-606 | |
| 2331 Protein Added: WP_109545107.1 blaOXA-582 | |
| 2332 Protein Added: WP_109545108.1 blaOXA-605 | |
| 2333 Protein Added: WP_109545109.1 blaOXA-640 | |
| 2334 Protein Added: WP_109545110.1 blaOXA-616 | |
| 2335 Protein Added: WP_109545111.1 blaOXA-613 | |
| 2336 Protein Added: WP_109545112.1 blaOXA-622 | |
| 2337 Protein Added: WP_109545113.1 blaOXA-618 | |
| 2338 Protein Added: WP_109545114.1 blaOXA-617 | |
| 2339 Protein Added: WP_109545115.1 blaOXA-615 | |
| 2340 Protein Added: WP_109545116.1 blaOXA-621 | |
| 2341 Protein Added: WP_109791184.1 blaTEM-233 | |
| 2342 Protein Added: WP_109791185.1 blaPDC-251 | |
| 2343 Protein Added: WP_109791186.1 blaPDC-252 | |
| 2344 Protein Added: WP_109791187.1 blaPDC-253 | |
| 2345 Protein Added: WP_109791188.1 blaPDC-254 | |
| 2346 Protein Added: WP_109791189.1 blaPDC-255 | |
| 2347 Protein Added: WP_109791190.1 blaPDC-256 | |
| 2348 Protein Added: WP_109791191.1 blaPDC-257 | |
| 2349 Protein Added: WP_109791192.1 blaPDC-258 | |
| 2350 Protein Added: WP_109791193.1 blaPDC-259 | |
| 2351 Protein Added: WP_109791194.1 blaPDC-260 | |
| 2352 Protein Added: WP_109791195.1 blaPDC-261 | |
| 2353 Protein Added: WP_109791196.1 blaPDC-262 | |
| 2354 Protein Added: WP_109791197.1 blaPDC-263 | |
| 2355 Protein Added: WP_109791198.1 blaPDC-264 | |
| 2356 Protein Added: WP_109791199.1 blaPDC-265 | |
| 2357 Protein Added: WP_109791200.1 blaPDC-266 | |
| 2358 Protein Added: WP_109791201.1 blaPDC-267 | |
| 2359 Protein Added: WP_109791202.1 blaPDC-268 | |
| 2360 Protein Added: WP_109791203.1 blaPDC-270 | |
| 2361 Protein Added: WP_109791204.1 blaPDC-272 | |
| 2362 Protein Added: WP_109791205.1 blaPDC-273 | |
| 2363 Protein Added: WP_109791206.1 blaPDC-274 | |
| 2364 Protein Added: WP_109791207.1 blaIMP-74 | |
| 2365 Protein Added: WP_109791208.1 blaIMP-75 | |
| 2366 Protein Added: WP_109791209.1 blaCTX-M-216 | |
| 2367 Protein Added: WP_109791210.1 blaTEM-234 | |
| 2368 Protein Added: WP_109791211.1 blaCTX-M-217 | |
| 2369 Protein Added: WP_109791212.1 blaSHV-204 | |
| 2370 Protein Added: WP_109791213.1 blaNDM-22 | |
| 2371 Protein Added: WP_109791214.1 blaCTX-M-218 | |
| 2372 Protein Added: WP_109791215.1 blaCMY-160 | |
| 2373 Protein Added: WP_109791216.1 blaOXA-654 | |
| 2374 Protein Added: WP_109997726.1 qnrA9 | |
| 2375 Protein Added: WP_110092882.1 blaCTX-M-219 | |
| 2376 Protein Added: WP_111273842.1 mcr-3.13 | |
| 2377 Protein Added: WP_111273843.1 mcr-3.14 | |
| 2378 Protein Added: WP_111273844.1 mcr-3.15 | |
| 2379 Protein Added: WP_111273845.1 mcr-3.16 | |
| 2380 Protein Added: WP_111273846.1 mcr-3.17 | |
| 2381 Protein Added: WP_111273847.1 mcr-3.18 | |
| 2382 Protein Added: WP_111273848.1 blaGES-35 | |
| 2383 Protein Added: WP_111273849.1 blaGES-36 | |
| 2384 Protein Added: WP_111273850.1 blaGES-37 | |
| 2385 Protein Added: WP_111273851.1 blaCMY-162 | |
| 2386 Protein Added: WP_111273852.1 blaKPC-35 | |
| 2387 Protein Added: WP_111672883.1 blaPDC-275 | |
| 2388 Protein Added: WP_111672884.1 blaPDC-294 | |
| 2389 Protein Added: WP_111672885.1 blaPDC-295 | |
| 2390 Protein Added: WP_111672886.1 blaPDC-296 | |
| 2391 Protein Added: WP_111672887.1 blaPDC-297 | |
| 2392 Protein Added: WP_111672888.1 blaPDC-299 | |
| 2393 Protein Added: WP_111672889.1 blaPDC-300 | |
| 2394 Protein Added: WP_111672890.1 blaPDC-276 | |
| 2395 Protein Added: WP_111672891.1 blaPDC-277 | |
| 2396 Protein Added: WP_111672892.1 blaPDC-279 | |
| 2397 Protein Added: WP_111672893.1 blaPDC-280 | |
| 2398 Protein Added: WP_111672894.1 blaPDC-281 | |
| 2399 Protein Added: WP_111672895.1 blaPDC-282 | |
| 2400 Protein Added: WP_111672896.1 blaPDC-283 | |
| 2401 Protein Added: WP_111672897.1 blaPDC-284 | |
| 2402 Protein Added: WP_111672898.1 blaPDC-287 | |
| 2403 Protein Added: WP_111672899.1 blaPDC-288 | |
| 2404 Protein Added: WP_111672900.1 blaPDC-289 | |
| 2405 Protein Added: WP_111672901.1 blaPDC-290 | |
| 2406 Protein Added: WP_111672902.1 blaCTX-M-220 | |
| 2407 Protein Added: WP_111672903.1 blaPDC-291 | |
| 2408 Protein Added: WP_111672904.1 blaPDC-292 | |
| 2409 Protein Added: WP_111672905.1 blaPDC-293 | |
| 2410 Protein Added: WP_111672906.1 blaCMY-163 | |
| 2411 Protein Added: WP_111672907.1 blaOXA-657 | |
| 2412 Protein Added: WP_111672908.1 blaPDC-301 | |
| 2413 Protein Added: WP_111672909.1 blaPDC-302 | |
| 2414 Protein Added: WP_111672910.1 blaPDC-303 | |
| 2415 Protein Added: WP_111672911.1 blaKPC-23 | |
| 2416 Protein Added: WP_111672912.1 blaNDM-23 | |
| 2417 Protein Added: WP_111672913.1 blaNDM-24 | |
| 2418 Protein Added: WP_111672914.1 blaVIM-57 | |
| 2419 Protein Added: WP_111690897.1 cfr(B) | |
| 2420 Protein Added: WP_111690898.1 cfr(C) | |
| 2421 Protein Modified: WP_011987126.1 cfrC updated to WP_011987126.1 cfr-Cb | |
| 2422 Protein Modified: WP_063854808.1 qnrS updated to WP_063854808.1 qnrS10 | |
| 2423 HMM Removed: NF000031.1 MFS_efflux_LmrA | |
| 2424 HMM Removed: NF000040.1 172051428_tet | |
| 2425 HMM Removed: NF000058.1 Erm41 | |
| 2426 HMM Removed: NF000060.1 MFS_efflux_LmrB | |
| 2427 HMM Removed: NF000106.1 40850658_otr | |
| 2428 HMM Removed: NF000131.1 MATE_multi_MepA | |
| 2429 HMM Removed: NF000140.3 AAC_6p_Salmo | |
| 2430 HMM Removed: NF000217.1 MATE_multi_FepA | |
| 2431 HMM Removed: NF000247.1 MexA | |
| 2432 HMM Removed: NF000249.1 MexE | |
| 2433 HMM Removed: NF000250.1 MexH | |
| 2434 HMM Removed: NF000251.1 MexW-MexI | |
| 2435 HMM Removed: NF000252.1 MexX | |
| 2436 HMM Removed: NF000263.1 MATE_multi_NorM | |
| 2437 HMM Removed: NF000282.2 RND_permease_1 | |
| 2438 HMM Removed: NF000313.1 adeA-adeI | |
| 2439 HMM Removed: NF000314.1 adeB | |
| 2440 HMM Removed: NF000315.1 adeC-adeK-oprM | |
| 2441 HMM Removed: NF000334.3 drrA | |
| 2442 HMM Removed: NF000336.1 emrE | |
| 2443 HMM Removed: NF000342.3 glpA_Cterm | |
| 2444 HMM Removed: NF000344.1 macA | |
| 2445 HMM Removed: NF000345.1 macB | |
| 2446 HMM Removed: NF000349.1 mfpA_AE000516.2 | |
| 2447 HMM Removed: NF000352.1 norA | |
| 2448 HMM Removed: NF000357.1 romA | |
| 2449 HMM Removed: NF000391.1 EmrB | |
| 2450 HMM Removed: NF010314.2 PRK13751.2 | |
| 2451 HMM Removed: NF012135.0 ANT_3pp_9_crypt | |
| 2452 HMM Removed: NF012144.2 ramA_TF | |
| 2453 HMM Removed: NF012163.2 BaeS_SmeS | |
| 2454 HMM Removed: NF012168.1 BlaI_of_BCL | |
| 2455 HMM Removed: NF012198.0 MarA_TF | |
| 2456 HMM Removed: NF012208.0 SDR_dihy_bifunc | |
| 2457 HMM Removed: NF012226.0 AdeS_HK | |
| 2458 HMM Removed: NF012227.0 AdeR_RR | |
| 2459 HMM Removed: NF012228.1 RobA_TF | |
| 2460 HMM Removed: NF028537.1 P_eth_NH2_trans | |
| 2461 HMM Removed: NF030466.0 TIGR02052 | |
| 2462 HMM Removed: NF030467.0 TIGR02053 | |
| 2463 HMM Removed: NF033086.2 penta_rpt_Qnr | |
| 2464 HMM Removed: NF033124.1 estX | |
| 2465 HMM Removed: NF033134.0 cmlA_floR | |
| 2466 HMM Removed: NF033138.1 RND-peri-MexC | |
| 2467 HMM Removed: NF033142.1 efflux_OM_AdeC | |
| 2468 HMM Removed: NF033143.1 efflux_OM_AdeK | |
| 2469 HMM Removed: NF033184.1 B3_Acin_new1 | |
| 2470 HMM Removed: NF033480.1 bifunc_MprF | |
| 2471 HMM Removed: NF033553.1 MerP_Gpos | |
| 2472 HMM Removed: NF033555.1 lyase_MerB | |
| 2473 HMM Removed: NF033556.1 MerTP_fusion | |
| 2474 HMM Removed: NF033560.1 merT_RC607 | |
| 2475 HMM Removed: NF033565.0 trans_MerF | |
| 2476 HMM Removed: NF033606.1 heat_AAA_ClpK | |
| 2477 HMM Removed: NF033607.0 disagg_AAA_ClpG | |
| 2478 HMM Removed: NF033617.1 RND_permease_2 | |
| 2479 HMM Removed: NF033627.1 intimin_all | |
| 2480 HMM Removed: NF033636.1 acid_shock_Asr | |
| 2481 HMM Modified: NF033408.2 polymyxin_MCR3 updated to NF033408.5 polymyxin_MCR3 | |
| 2482 Family Removed: - cfrC | |
| 2483 Family Added: - cfr(B) | |
| 2484 Family Added: - cfr(C) | |
| 2485 Family Added: - cfr-Cb | |
| 2486 Family Changed: NF033408.2 mcr-3 updated to NF033408.5 mcr-3 | |
| 2487 | |
| 2488 --------------------------------------------------------------------- | |
| 2489 Changes included in 2018-05-15.1 | |
| 2490 --------------------------------------------------------------------- | |
| 2491 - Data Changes: | |
| 2492 Protein Removed: WP_010886396.1 lmr(B) | |
| 2493 HMM Added: NF033614.1 APH_6_Ic_gen | |
| 2494 HMM Added: NF033617.1 RND_permease_2 | |
| 2495 HMM Added: NF033626.1 blaBKC_GPC | |
| 2496 HMM Added: NF033627.1 intimin_all | |
| 2497 HMM Added: NF033636.1 acid_shock_Asr | |
| 2498 HMM Modified: NF000011.1 APH_6_Ic updated to NF000011.2 APH_6_Ic | |
| 2499 HMM Modified: NF000221.3 FosA updated to NF000221.4 FosA | |
| 2500 HMM Modified: NF000282.1 RND_permease_1 updated to NF000282.2 RND_permease_1 | |
| 2501 HMM Modified: NF000428.2 blaFRI updated to NF000428.4 blaFRI | |
| 2502 HMM Modified: NF033582.0 blaALI updated to NF033582.2 blaALI | |
| 2503 Family Removed: NF000060.1 lmr(B) | |
| 2504 Family Added: NF033626.1 blaBKC_GPC | |
| 2505 Family Added: - blaGPC | |
| 2506 - Algorithm Changes: | |
| 2507 - Partial proteins identified as "Method" PARTIAL if length of blast | |
| 2508 alignment > 50% and < 90% of database protein. | |
| 2509 | |
| 2510 --------------------------------------------------------------------- | |
| 2511 Changes included in 2018-05-08.1 RELEASE CANDIDATE | |
| 2512 --------------------------------------------------------------------- | |
| 2513 - Addition of handling for genbank plasmid gff | |
| 2514 | |
| 2515 --------------------------------------------------------------------- | |
| 2516 Changes included in 2018-04-16.1 | |
| 2517 --------------------------------------------------------------------- | |
| 2518 - Addition of file format checking for FASTA and GFF files before AMRFinder blast and HMM searches are run | |
| 2519 - Altered format of fam.tab file to include NF accessions for families | |
| 2520 - Removal of non-reportable families from fam.tab |