Mercurial > repos > galaxytrakr > data_manager_humann2_database_downloader

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planemo upload commit 494109a0410b49a6d05b5b0aa61639b16893bd04
author galaxytrakr
date Thu, 26 Mar 2026 20:05:32 +0000
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4f93334e2a83 planemo upload commit 494109a0410b49a6d05b5b0aa61639b16893bd04
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1 <?xml version="1.0"?>
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2 <data_managers>
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3 <data_manager tool_file="data_manager/data_manager_humann2_download.xml" id="data_manager_humann2_download" >
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4 <data_table name="humann2_nucleotide_database"> <!-- Defines a Data Table to be modified. -->
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5 <output> <!-- Handle the output of the Data Manager Tool -->
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6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
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7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
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8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
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9 <column name="path" output_ref="out_file" >
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10 <move type="directory">
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11 <source>${path}</source>
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12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann2/data/nucleotide_database/${dbkey}</target>
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13 </move>
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14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann2/data/nucleotide_database/${dbkey}</value_translation>
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15 </column>
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16 </output>
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17 </data_table>
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18 <data_table name="humann2_protein_database"> <!-- Defines a Data Table to be modified. -->
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19 <output> <!-- Handle the output of the Data Manager Tool -->
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20 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
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21 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
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22 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
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23 <column name="path" output_ref="out_file" >
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24 <move type="directory">
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25 <source>${path}</source>
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26 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann2/data/protein_database/${dbkey}</target>
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27 </move>
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28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann2/data/protein_database/${dbkey}</value_translation>
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29 </column>
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30 </output>
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31 </data_table>
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32 </data_manager>
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33 </data_managers>