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comparison test-data/test/resistance/NCTC11351_resfinder/pheno_table_campylobacter_jejuni.txt @ 0:91bc7378c1c5 draft
planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
| author | jpayne |
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| date | Mon, 11 Aug 2025 15:37:26 +0000 |
| parents | |
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| -1:000000000000 | 0:91bc7378c1c5 |
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| 1 # ResFinder phenotype results for campylobacter jejuni. | |
| 2 # Sample: NCTC11351.fa | |
| 3 # | |
| 4 # The phenotype 'No resistance' should be interpreted with | |
| 5 # caution, as it only means that nothing in the used | |
| 6 # database indicate resistance, but resistance could exist | |
| 7 # from 'unknown' or not yet implemented sources. | |
| 8 # | |
| 9 # The 'Match' column stores one of the integers 0, 1, 2, 3. | |
| 10 # 0: No match found | |
| 11 # 1: Match < 100% ID AND match length < ref length | |
| 12 # 2: Match < 100% ID AND match length = ref length | |
| 13 # 3: Match = 100% ID AND match length = ref length | |
| 14 # If several hits causing the same resistance are found, | |
| 15 # the highest number will be stored in the 'Match' column. | |
| 16 | |
| 17 # Antimicrobial Class WGS-predicted phenotype Match Genetic background | |
| 18 gentamicin aminoglycoside No resistance 0 | |
| 19 ciprofloxacin quinolone No resistance 0 | |
| 20 tetracycline tetracycline No resistance 0 | |
| 21 nalidixic acid quinolone No resistance 0 | |
| 22 ampicillin beta-lactam No resistance 0 | |
| 23 streptomycin aminoglycoside No resistance 0 | |
| 24 erythromycin macrolide No resistance 0 |