Mercurial > repos > jpayne > refchooser
diff test-data/test/resistance/NCTC11351_resfinder/pheno_table_campylobacter_jejuni.txt @ 0:91bc7378c1c5 draft
planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
| author | jpayne |
|---|---|
| date | Mon, 11 Aug 2025 15:37:26 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test/resistance/NCTC11351_resfinder/pheno_table_campylobacter_jejuni.txt Mon Aug 11 15:37:26 2025 +0000 @@ -0,0 +1,24 @@ +# ResFinder phenotype results for campylobacter jejuni. +# Sample: NCTC11351.fa +# +# The phenotype 'No resistance' should be interpreted with +# caution, as it only means that nothing in the used +# database indicate resistance, but resistance could exist +# from 'unknown' or not yet implemented sources. +# +# The 'Match' column stores one of the integers 0, 1, 2, 3. +# 0: No match found +# 1: Match < 100% ID AND match length < ref length +# 2: Match < 100% ID AND match length = ref length +# 3: Match = 100% ID AND match length = ref length +# If several hits causing the same resistance are found, +# the highest number will be stored in the 'Match' column. + +# Antimicrobial Class WGS-predicted phenotype Match Genetic background +gentamicin aminoglycoside No resistance 0 +ciprofloxacin quinolone No resistance 0 +tetracycline tetracycline No resistance 0 +nalidixic acid quinolone No resistance 0 +ampicillin beta-lactam No resistance 0 +streptomycin aminoglycoside No resistance 0 +erythromycin macrolide No resistance 0