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annotate test-data/test/resistance/NCTC11351_resfinder/pheno_table_campylobacter_jejuni.txt @ 0:91bc7378c1c5 draft

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planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
author jpayne
date Mon, 11 Aug 2025 15:37:26 +0000
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1 # ResFinder phenotype results for campylobacter jejuni.
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2 # Sample: NCTC11351.fa
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3 #
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4 # The phenotype 'No resistance' should be interpreted with
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5 # caution, as it only means that nothing in the used
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6 # database indicate resistance, but resistance could exist
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7 # from 'unknown' or not yet implemented sources.
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8 #
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9 # The 'Match' column stores one of the integers 0, 1, 2, 3.
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10 # 0: No match found
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11 # 1: Match < 100% ID AND match length < ref length
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12 # 2: Match < 100% ID AND match length = ref length
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13 # 3: Match = 100% ID AND match length = ref length
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14 # If several hits causing the same resistance are found,
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15 # the highest number will be stored in the 'Match' column.
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16
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17 # Antimicrobial Class WGS-predicted phenotype Match Genetic background
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18 gentamicin aminoglycoside No resistance 0
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19 ciprofloxacin quinolone No resistance 0
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20 tetracycline tetracycline No resistance 0
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21 nalidixic acid quinolone No resistance 0
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22 ampicillin beta-lactam No resistance 0
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23 streptomycin aminoglycoside No resistance 0
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24 erythromycin macrolide No resistance 0