Mercurial > repos > kkonganti > cfsan_centriflaken

changeset 87:34d411a7bd4f

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"planemo upload"
author kkonganti
date Wed, 13 Jul 2022 17:27:58 -0400
parents 7e421f421b5e
children 0c59342d0144
files cfsan_centriflaken.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/cfsan_centriflaken.xml	Wed Jul 13 17:18:04 2022 -0400
+++ b/cfsan_centriflaken.xml	Wed Jul 13 17:27:58 2022 -0400
@@ -64,10 +64,10 @@
 	--fq_filename_delim_idx $fq_filename_delim_idx
 	--centrifuge_extract_bug '${centrifuge_extract_bug}'
 	-profile kondagac;
-    mv './cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-multiqc/multiqc_report.html' './multiqc_report.html' || exit 1;
-    mv './cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-results/kraken2_extract_contigs' kraken2_extract_contigs || exit 1;
-    rm -rf ./cpipes-output || exit 1;
-    rm -rf ./work || exit 1
+    mv './cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-multiqc/multiqc_report.html' './multiqc_report.html' > /dev/null 2>&1 || exit 1;
+    mv './cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-results/kraken2_extract_contigs' kraken2_extract_contigs > /dev/null 2>&1 || exit 1;
+    rm -rf ./cpipes-output > /dev/null 2>&1 || exit 1;
+    rm -rf ./work > /dev/null 2>&1 || exit 1
     ]]></command>
     <inputs>
         <conditional name="input_read_type_cond">