Mercurial > repos > kkonganti > cfsan_centriflaken
changeset 87:34d411a7bd4f
"planemo upload"
author | kkonganti |
---|---|
date | Wed, 13 Jul 2022 17:27:58 -0400 |
parents | 7e421f421b5e |
children | 0c59342d0144 |
files | cfsan_centriflaken.xml |
diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/cfsan_centriflaken.xml Wed Jul 13 17:18:04 2022 -0400 +++ b/cfsan_centriflaken.xml Wed Jul 13 17:27:58 2022 -0400 @@ -64,10 +64,10 @@ --fq_filename_delim_idx $fq_filename_delim_idx --centrifuge_extract_bug '${centrifuge_extract_bug}' -profile kondagac; - mv './cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-multiqc/multiqc_report.html' './multiqc_report.html' || exit 1; - mv './cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-results/kraken2_extract_contigs' kraken2_extract_contigs || exit 1; - rm -rf ./cpipes-output || exit 1; - rm -rf ./work || exit 1 + mv './cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-multiqc/multiqc_report.html' './multiqc_report.html' > /dev/null 2>&1 || exit 1; + mv './cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-results/kraken2_extract_contigs' kraken2_extract_contigs > /dev/null 2>&1 || exit 1; + rm -rf ./cpipes-output > /dev/null 2>&1 || exit 1; + rm -rf ./work > /dev/null 2>&1 || exit 1 ]]></command> <inputs> <conditional name="input_read_type_cond">