Mercurial > repos > rliterman > csp2
annotate CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/bbmap-39.01-1/bbversion.sh @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 17:55:14 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| jpayne@69 | 1 #!/bin/bash |
| jpayne@69 | 2 |
| jpayne@69 | 3 usage(){ |
| jpayne@69 | 4 echo " |
| jpayne@69 | 5 Written by Brian Bushnell |
| jpayne@69 | 6 Last modified May 4, 2017 |
| jpayne@69 | 7 |
| jpayne@69 | 8 Description: Prints the BBTools version number. |
| jpayne@69 | 9 Add an argument to print the version name too. |
| jpayne@69 | 10 |
| jpayne@69 | 11 Usage: bbversion.sh |
| jpayne@69 | 12 " |
| jpayne@69 | 13 } |
| jpayne@69 | 14 |
| jpayne@69 | 15 pushd . > /dev/null |
| jpayne@69 | 16 DIR="${BASH_SOURCE[0]}" |
| jpayne@69 | 17 while [ -h "$DIR" ]; do |
| jpayne@69 | 18 cd "$(dirname "$DIR")" |
| jpayne@69 | 19 DIR="$(readlink "$(basename "$DIR")")" |
| jpayne@69 | 20 done |
| jpayne@69 | 21 cd "$(dirname "$DIR")" |
| jpayne@69 | 22 DIR="$(pwd)/" |
| jpayne@69 | 23 popd > /dev/null |
| jpayne@69 | 24 |
| jpayne@69 | 25 CP="$DIR""current/" |
| jpayne@69 | 26 |
| jpayne@69 | 27 bbversion() { |
| jpayne@69 | 28 local CMD="java -Xmx80m -cp $CP driver.BBVersion $@" |
| jpayne@69 | 29 eval $CMD |
| jpayne@69 | 30 } |
| jpayne@69 | 31 |
| jpayne@69 | 32 bbversion "$@" |