Mercurial > repos > rliterman > csp2

annotate CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pysam/libchtslib.c @ 68:5028fdace37b

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planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author jpayne
date Tue, 18 Mar 2025 16:23:26 -0400
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jpayne@68 1 /* Generated by Cython 3.0.11 */
jpayne@68 2
jpayne@68 3 /* BEGIN: Cython Metadata
jpayne@68 4 {
jpayne@68 5 "distutils": {
jpayne@68 6 "define_macros": [
jpayne@68 7 [
jpayne@68 8 "BUILDING_WHEEL",
jpayne@68 9 null
jpayne@68 10 ]
jpayne@68 11 ],
jpayne@68 12 "depends": [
jpayne@68 13 "/project/htslib/htslib/bgzf.h",
jpayne@68 14 "/project/htslib/htslib/cram.h",
jpayne@68 15 "/project/htslib/htslib/faidx.h",
jpayne@68 16 "/project/htslib/htslib/hfile.h",
jpayne@68 17 "/project/htslib/htslib/hts.h",
jpayne@68 18 "/project/htslib/htslib/kstring.h",
jpayne@68 19 "/project/htslib/htslib/sam.h",
jpayne@68 20 "/project/htslib/htslib/tbx.h",
jpayne@68 21 "/project/htslib/htslib/vcf.h",
jpayne@68 22 "/project/htslib/htslib/vcfutils.h",
jpayne@68 23 "/project/pysam/htslib_util.h"
jpayne@68 24 ],
jpayne@68 25 "extra_compile_args": [
jpayne@68 26 "-Wno-unused",
jpayne@68 27 "-Wno-strict-prototypes",
jpayne@68 28 "-Wno-sign-compare",
jpayne@68 29 "-Wno-error=declaration-after-statement"
jpayne@68 30 ],
jpayne@68 31 "extra_link_args": [
jpayne@68 32 "-Wl,-rpath,$ORIGIN"
jpayne@68 33 ],
jpayne@68 34 "extra_objects": [
jpayne@68 35 "htslib/kfunc.o",
jpayne@68 36 "htslib/kstring.o",
jpayne@68 37 "htslib/bcf_sr_sort.o",
jpayne@68 38 "htslib/bgzf.o",
jpayne@68 39 "htslib/errmod.o",
jpayne@68 40 "htslib/faidx.o",
jpayne@68 41 "htslib/header.o",
jpayne@68 42 "htslib/hfile.o",
jpayne@68 43 "htslib/hts.o",
jpayne@68 44 "htslib/hts_expr.o",
jpayne@68 45 "htslib/hts_os.o",
jpayne@68 46 "htslib/md5.o",
jpayne@68 47 "htslib/multipart.o",
jpayne@68 48 "htslib/probaln.o",
jpayne@68 49 "htslib/realn.o",
jpayne@68 50 "htslib/regidx.o",
jpayne@68 51 "htslib/region.o",
jpayne@68 52 "htslib/sam.o",
jpayne@68 53 "htslib/sam_mods.o",
jpayne@68 54 "htslib/simd.o",
jpayne@68 55 "htslib/synced_bcf_reader.o",
jpayne@68 56 "htslib/vcf_sweep.o",
jpayne@68 57 "htslib/tbx.o",
jpayne@68 58 "htslib/textutils.o",
jpayne@68 59 "htslib/thread_pool.o",
jpayne@68 60 "htslib/vcf.o",
jpayne@68 61 "htslib/vcfutils.o",
jpayne@68 62 "htslib/cram/cram_codecs.o",
jpayne@68 63 "htslib/cram/cram_decode.o",
jpayne@68 64 "htslib/cram/cram_encode.o",
jpayne@68 65 "htslib/cram/cram_external.o",
jpayne@68 66 "htslib/cram/cram_index.o",
jpayne@68 67 "htslib/cram/cram_io.o",
jpayne@68 68 "htslib/cram/cram_stats.o",
jpayne@68 69 "htslib/cram/mFILE.o",
jpayne@68 70 "htslib/cram/open_trace_file.o",
jpayne@68 71 "htslib/cram/pooled_alloc.o",
jpayne@68 72 "htslib/cram/string_alloc.o",
jpayne@68 73 "htslib/htscodecs/htscodecs/arith_dynamic.o",
jpayne@68 74 "htslib/htscodecs/htscodecs/fqzcomp_qual.o",
jpayne@68 75 "htslib/htscodecs/htscodecs/htscodecs.o",
jpayne@68 76 "htslib/htscodecs/htscodecs/pack.o",
jpayne@68 77 "htslib/htscodecs/htscodecs/rANS_static4x16pr.o",
jpayne@68 78 "htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.o",
jpayne@68 79 "htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.o",
jpayne@68 80 "htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.o",
jpayne@68 81 "htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.o",
jpayne@68 82 "htslib/htscodecs/htscodecs/rANS_static32x16pr.o",
jpayne@68 83 "htslib/htscodecs/htscodecs/rANS_static.o",
jpayne@68 84 "htslib/htscodecs/htscodecs/rle.o",
jpayne@68 85 "htslib/htscodecs/htscodecs/tokenise_name3.o",
jpayne@68 86 "htslib/htscodecs/htscodecs/utils.o",
jpayne@68 87 "htslib/hfile_libcurl.o",
jpayne@68 88 "htslib/hfile_gcs.o",
jpayne@68 89 "htslib/hfile_s3.o",
jpayne@68 90 "htslib/hfile_s3_write.o"
jpayne@68 91 ],
jpayne@68 92 "include_dirs": [
jpayne@68 93 "pysam",
jpayne@68 94 "/project/pysam",
jpayne@68 95 "/project/htslib",
jpayne@68 96 "/project/samtools",
jpayne@68 97 "/project/samtools/lz4",
jpayne@68 98 "/project/bcftools",
jpayne@68 99 "/project"
jpayne@68 100 ],
jpayne@68 101 "language": "c",
jpayne@68 102 "libraries": [
jpayne@68 103 "z",
jpayne@68 104 "lzma",
jpayne@68 105 "bz2",
jpayne@68 106 "z",
jpayne@68 107 "m",
jpayne@68 108 "curl",
jpayne@68 109 "crypto"
jpayne@68 110 ],
jpayne@68 111 "library_dirs": [
jpayne@68 112 "/project/pysam",
jpayne@68 113 "/project",
jpayne@68 114 "build/lib.linux-x86_64-cpython-37/pysam"
jpayne@68 115 ],
jpayne@68 116 "name": "pysam.libchtslib",
jpayne@68 117 "sources": [
jpayne@68 118 "pysam/libchtslib.pyx",
jpayne@68 119 "pysam/htslib_util.c"
jpayne@68 120 ]
jpayne@68 121 },
jpayne@68 122 "module_name": "pysam.libchtslib"
jpayne@68 123 }
jpayne@68 124 END: Cython Metadata */
jpayne@68 125
jpayne@68 126 #ifndef PY_SSIZE_T_CLEAN
jpayne@68 127 #define PY_SSIZE_T_CLEAN
jpayne@68 128 #endif /* PY_SSIZE_T_CLEAN */
jpayne@68 129 #if defined(CYTHON_LIMITED_API) && 0
jpayne@68 130 #ifndef Py_LIMITED_API
jpayne@68 131 #if CYTHON_LIMITED_API+0 > 0x03030000
jpayne@68 132 #define Py_LIMITED_API CYTHON_LIMITED_API
jpayne@68 133 #else
jpayne@68 134 #define Py_LIMITED_API 0x03030000
jpayne@68 135 #endif
jpayne@68 136 #endif
jpayne@68 137 #endif
jpayne@68 138
jpayne@68 139 #include "Python.h"
jpayne@68 140
jpayne@68 141 #if PY_MAJOR_VERSION >= 3
jpayne@68 142 #define __Pyx_PyFloat_FromString(obj) PyFloat_FromString(obj)
jpayne@68 143 #else
jpayne@68 144 #define __Pyx_PyFloat_FromString(obj) PyFloat_FromString(obj, NULL)
jpayne@68 145 #endif
jpayne@68 146
jpayne@68 147
jpayne@68 148 #if PY_MAJOR_VERSION <= 2
jpayne@68 149 #define PyDict_GetItemWithError _PyDict_GetItemWithError
jpayne@68 150 #endif
jpayne@68 151
jpayne@68 152
jpayne@68 153 #if (PY_VERSION_HEX < 0x030700b1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030600)) && !defined(PyContextVar_Get)
jpayne@68 154 #define PyContextVar_Get(var, d, v) ((d) ? ((void)(var), Py_INCREF(d), (v)[0] = (d), 0) : ((v)[0] = NULL, 0) )
jpayne@68 155 #endif
jpayne@68 156
jpayne@68 157 #ifndef Py_PYTHON_H
jpayne@68 158 #error Python headers needed to compile C extensions, please install development version of Python.
jpayne@68 159 #elif PY_VERSION_HEX < 0x02070000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000)
jpayne@68 160 #error Cython requires Python 2.7+ or Python 3.3+.
jpayne@68 161 #else
jpayne@68 162 #if defined(CYTHON_LIMITED_API) && CYTHON_LIMITED_API
jpayne@68 163 #define __PYX_EXTRA_ABI_MODULE_NAME "limited"
jpayne@68 164 #else
jpayne@68 165 #define __PYX_EXTRA_ABI_MODULE_NAME ""
jpayne@68 166 #endif
jpayne@68 167 #define CYTHON_ABI "3_0_11" __PYX_EXTRA_ABI_MODULE_NAME
jpayne@68 168 #define __PYX_ABI_MODULE_NAME "_cython_" CYTHON_ABI
jpayne@68 169 #define __PYX_TYPE_MODULE_PREFIX __PYX_ABI_MODULE_NAME "."
jpayne@68 170 #define CYTHON_HEX_VERSION 0x03000BF0
jpayne@68 171 #define CYTHON_FUTURE_DIVISION 1
jpayne@68 172 #include <stddef.h>
jpayne@68 173 #ifndef offsetof
jpayne@68 174 #define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
jpayne@68 175 #endif
jpayne@68 176 #if !defined(_WIN32) && !defined(WIN32) && !defined(MS_WINDOWS)
jpayne@68 177 #ifndef __stdcall
jpayne@68 178 #define __stdcall
jpayne@68 179 #endif
jpayne@68 180 #ifndef __cdecl
jpayne@68 181 #define __cdecl
jpayne@68 182 #endif
jpayne@68 183 #ifndef __fastcall
jpayne@68 184 #define __fastcall
jpayne@68 185 #endif
jpayne@68 186 #endif
jpayne@68 187 #ifndef DL_IMPORT
jpayne@68 188 #define DL_IMPORT(t) t
jpayne@68 189 #endif
jpayne@68 190 #ifndef DL_EXPORT
jpayne@68 191 #define DL_EXPORT(t) t
jpayne@68 192 #endif
jpayne@68 193 #define __PYX_COMMA ,
jpayne@68 194 #ifndef HAVE_LONG_LONG
jpayne@68 195 #define HAVE_LONG_LONG
jpayne@68 196 #endif
jpayne@68 197 #ifndef PY_LONG_LONG
jpayne@68 198 #define PY_LONG_LONG LONG_LONG
jpayne@68 199 #endif
jpayne@68 200 #ifndef Py_HUGE_VAL
jpayne@68 201 #define Py_HUGE_VAL HUGE_VAL
jpayne@68 202 #endif
jpayne@68 203 #define __PYX_LIMITED_VERSION_HEX PY_VERSION_HEX
jpayne@68 204 #if defined(GRAALVM_PYTHON)
jpayne@68 205 /* For very preliminary testing purposes. Most variables are set the same as PyPy.
jpayne@68 206 The existence of this section does not imply that anything works or is even tested */
jpayne@68 207 #define CYTHON_COMPILING_IN_PYPY 0
jpayne@68 208 #define CYTHON_COMPILING_IN_CPYTHON 0
jpayne@68 209 #define CYTHON_COMPILING_IN_LIMITED_API 0
jpayne@68 210 #define CYTHON_COMPILING_IN_GRAAL 1
jpayne@68 211 #define CYTHON_COMPILING_IN_NOGIL 0
jpayne@68 212 #undef CYTHON_USE_TYPE_SLOTS
jpayne@68 213 #define CYTHON_USE_TYPE_SLOTS 0
jpayne@68 214 #undef CYTHON_USE_TYPE_SPECS
jpayne@68 215 #define CYTHON_USE_TYPE_SPECS 0
jpayne@68 216 #undef CYTHON_USE_PYTYPE_LOOKUP
jpayne@68 217 #define CYTHON_USE_PYTYPE_LOOKUP 0
jpayne@68 218 #if PY_VERSION_HEX < 0x03050000
jpayne@68 219 #undef CYTHON_USE_ASYNC_SLOTS
jpayne@68 220 #define CYTHON_USE_ASYNC_SLOTS 0
jpayne@68 221 #elif !defined(CYTHON_USE_ASYNC_SLOTS)
jpayne@68 222 #define CYTHON_USE_ASYNC_SLOTS 1
jpayne@68 223 #endif
jpayne@68 224 #undef CYTHON_USE_PYLIST_INTERNALS
jpayne@68 225 #define CYTHON_USE_PYLIST_INTERNALS 0
jpayne@68 226 #undef CYTHON_USE_UNICODE_INTERNALS
jpayne@68 227 #define CYTHON_USE_UNICODE_INTERNALS 0
jpayne@68 228 #undef CYTHON_USE_UNICODE_WRITER
jpayne@68 229 #define CYTHON_USE_UNICODE_WRITER 0
jpayne@68 230 #undef CYTHON_USE_PYLONG_INTERNALS
jpayne@68 231 #define CYTHON_USE_PYLONG_INTERNALS 0
jpayne@68 232 #undef CYTHON_AVOID_BORROWED_REFS
jpayne@68 233 #define CYTHON_AVOID_BORROWED_REFS 1
jpayne@68 234 #undef CYTHON_ASSUME_SAFE_MACROS
jpayne@68 235 #define CYTHON_ASSUME_SAFE_MACROS 0
jpayne@68 236 #undef CYTHON_UNPACK_METHODS
jpayne@68 237 #define CYTHON_UNPACK_METHODS 0
jpayne@68 238 #undef CYTHON_FAST_THREAD_STATE
jpayne@68 239 #define CYTHON_FAST_THREAD_STATE 0
jpayne@68 240 #undef CYTHON_FAST_GIL
jpayne@68 241 #define CYTHON_FAST_GIL 0
jpayne@68 242 #undef CYTHON_METH_FASTCALL
jpayne@68 243 #define CYTHON_METH_FASTCALL 0
jpayne@68 244 #undef CYTHON_FAST_PYCALL
jpayne@68 245 #define CYTHON_FAST_PYCALL 0
jpayne@68 246 #ifndef CYTHON_PEP487_INIT_SUBCLASS
jpayne@68 247 #define CYTHON_PEP487_INIT_SUBCLASS (PY_MAJOR_VERSION >= 3)
jpayne@68 248 #endif
jpayne@68 249 #undef CYTHON_PEP489_MULTI_PHASE_INIT
jpayne@68 250 #define CYTHON_PEP489_MULTI_PHASE_INIT 1
jpayne@68 251 #undef CYTHON_USE_MODULE_STATE
jpayne@68 252 #define CYTHON_USE_MODULE_STATE 0
jpayne@68 253 #undef CYTHON_USE_TP_FINALIZE
jpayne@68 254 #define CYTHON_USE_TP_FINALIZE 0
jpayne@68 255 #undef CYTHON_USE_DICT_VERSIONS
jpayne@68 256 #define CYTHON_USE_DICT_VERSIONS 0
jpayne@68 257 #undef CYTHON_USE_EXC_INFO_STACK
jpayne@68 258 #define CYTHON_USE_EXC_INFO_STACK 0
jpayne@68 259 #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
jpayne@68 260 #define CYTHON_UPDATE_DESCRIPTOR_DOC 0
jpayne@68 261 #endif
jpayne@68 262 #undef CYTHON_USE_FREELISTS
jpayne@68 263 #define CYTHON_USE_FREELISTS 0
jpayne@68 264 #elif defined(PYPY_VERSION)
jpayne@68 265 #define CYTHON_COMPILING_IN_PYPY 1
jpayne@68 266 #define CYTHON_COMPILING_IN_CPYTHON 0
jpayne@68 267 #define CYTHON_COMPILING_IN_LIMITED_API 0
jpayne@68 268 #define CYTHON_COMPILING_IN_GRAAL 0
jpayne@68 269 #define CYTHON_COMPILING_IN_NOGIL 0
jpayne@68 270 #undef CYTHON_USE_TYPE_SLOTS
jpayne@68 271 #define CYTHON_USE_TYPE_SLOTS 0
jpayne@68 272 #ifndef CYTHON_USE_TYPE_SPECS
jpayne@68 273 #define CYTHON_USE_TYPE_SPECS 0
jpayne@68 274 #endif
jpayne@68 275 #undef CYTHON_USE_PYTYPE_LOOKUP
jpayne@68 276 #define CYTHON_USE_PYTYPE_LOOKUP 0
jpayne@68 277 #if PY_VERSION_HEX < 0x03050000
jpayne@68 278 #undef CYTHON_USE_ASYNC_SLOTS
jpayne@68 279 #define CYTHON_USE_ASYNC_SLOTS 0
jpayne@68 280 #elif !defined(CYTHON_USE_ASYNC_SLOTS)
jpayne@68 281 #define CYTHON_USE_ASYNC_SLOTS 1
jpayne@68 282 #endif
jpayne@68 283 #undef CYTHON_USE_PYLIST_INTERNALS
jpayne@68 284 #define CYTHON_USE_PYLIST_INTERNALS 0
jpayne@68 285 #undef CYTHON_USE_UNICODE_INTERNALS
jpayne@68 286 #define CYTHON_USE_UNICODE_INTERNALS 0
jpayne@68 287 #undef CYTHON_USE_UNICODE_WRITER
jpayne@68 288 #define CYTHON_USE_UNICODE_WRITER 0
jpayne@68 289 #undef CYTHON_USE_PYLONG_INTERNALS
jpayne@68 290 #define CYTHON_USE_PYLONG_INTERNALS 0
jpayne@68 291 #undef CYTHON_AVOID_BORROWED_REFS
jpayne@68 292 #define CYTHON_AVOID_BORROWED_REFS 1
jpayne@68 293 #undef CYTHON_ASSUME_SAFE_MACROS
jpayne@68 294 #define CYTHON_ASSUME_SAFE_MACROS 0
jpayne@68 295 #undef CYTHON_UNPACK_METHODS
jpayne@68 296 #define CYTHON_UNPACK_METHODS 0
jpayne@68 297 #undef CYTHON_FAST_THREAD_STATE
jpayne@68 298 #define CYTHON_FAST_THREAD_STATE 0
jpayne@68 299 #undef CYTHON_FAST_GIL
jpayne@68 300 #define CYTHON_FAST_GIL 0
jpayne@68 301 #undef CYTHON_METH_FASTCALL
jpayne@68 302 #define CYTHON_METH_FASTCALL 0
jpayne@68 303 #undef CYTHON_FAST_PYCALL
jpayne@68 304 #define CYTHON_FAST_PYCALL 0
jpayne@68 305 #ifndef CYTHON_PEP487_INIT_SUBCLASS
jpayne@68 306 #define CYTHON_PEP487_INIT_SUBCLASS (PY_MAJOR_VERSION >= 3)
jpayne@68 307 #endif
jpayne@68 308 #if PY_VERSION_HEX < 0x03090000
jpayne@68 309 #undef CYTHON_PEP489_MULTI_PHASE_INIT
jpayne@68 310 #define CYTHON_PEP489_MULTI_PHASE_INIT 0
jpayne@68 311 #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT)
jpayne@68 312 #define CYTHON_PEP489_MULTI_PHASE_INIT 1
jpayne@68 313 #endif
jpayne@68 314 #undef CYTHON_USE_MODULE_STATE
jpayne@68 315 #define CYTHON_USE_MODULE_STATE 0
jpayne@68 316 #undef CYTHON_USE_TP_FINALIZE
jpayne@68 317 #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1 && PYPY_VERSION_NUM >= 0x07030C00)
jpayne@68 318 #undef CYTHON_USE_DICT_VERSIONS
jpayne@68 319 #define CYTHON_USE_DICT_VERSIONS 0
jpayne@68 320 #undef CYTHON_USE_EXC_INFO_STACK
jpayne@68 321 #define CYTHON_USE_EXC_INFO_STACK 0
jpayne@68 322 #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
jpayne@68 323 #define CYTHON_UPDATE_DESCRIPTOR_DOC 0
jpayne@68 324 #endif
jpayne@68 325 #undef CYTHON_USE_FREELISTS
jpayne@68 326 #define CYTHON_USE_FREELISTS 0
jpayne@68 327 #elif defined(CYTHON_LIMITED_API)
jpayne@68 328 #ifdef Py_LIMITED_API
jpayne@68 329 #undef __PYX_LIMITED_VERSION_HEX
jpayne@68 330 #define __PYX_LIMITED_VERSION_HEX Py_LIMITED_API
jpayne@68 331 #endif
jpayne@68 332 #define CYTHON_COMPILING_IN_PYPY 0
jpayne@68 333 #define CYTHON_COMPILING_IN_CPYTHON 0
jpayne@68 334 #define CYTHON_COMPILING_IN_LIMITED_API 1
jpayne@68 335 #define CYTHON_COMPILING_IN_GRAAL 0
jpayne@68 336 #define CYTHON_COMPILING_IN_NOGIL 0
jpayne@68 337 #undef CYTHON_CLINE_IN_TRACEBACK
jpayne@68 338 #define CYTHON_CLINE_IN_TRACEBACK 0
jpayne@68 339 #undef CYTHON_USE_TYPE_SLOTS
jpayne@68 340 #define CYTHON_USE_TYPE_SLOTS 0
jpayne@68 341 #undef CYTHON_USE_TYPE_SPECS
jpayne@68 342 #define CYTHON_USE_TYPE_SPECS 1
jpayne@68 343 #undef CYTHON_USE_PYTYPE_LOOKUP
jpayne@68 344 #define CYTHON_USE_PYTYPE_LOOKUP 0
jpayne@68 345 #undef CYTHON_USE_ASYNC_SLOTS
jpayne@68 346 #define CYTHON_USE_ASYNC_SLOTS 0
jpayne@68 347 #undef CYTHON_USE_PYLIST_INTERNALS
jpayne@68 348 #define CYTHON_USE_PYLIST_INTERNALS 0
jpayne@68 349 #undef CYTHON_USE_UNICODE_INTERNALS
jpayne@68 350 #define CYTHON_USE_UNICODE_INTERNALS 0
jpayne@68 351 #ifndef CYTHON_USE_UNICODE_WRITER
jpayne@68 352 #define CYTHON_USE_UNICODE_WRITER 0
jpayne@68 353 #endif
jpayne@68 354 #undef CYTHON_USE_PYLONG_INTERNALS
jpayne@68 355 #define CYTHON_USE_PYLONG_INTERNALS 0
jpayne@68 356 #ifndef CYTHON_AVOID_BORROWED_REFS
jpayne@68 357 #define CYTHON_AVOID_BORROWED_REFS 0
jpayne@68 358 #endif
jpayne@68 359 #undef CYTHON_ASSUME_SAFE_MACROS
jpayne@68 360 #define CYTHON_ASSUME_SAFE_MACROS 0
jpayne@68 361 #undef CYTHON_UNPACK_METHODS
jpayne@68 362 #define CYTHON_UNPACK_METHODS 0
jpayne@68 363 #undef CYTHON_FAST_THREAD_STATE
jpayne@68 364 #define CYTHON_FAST_THREAD_STATE 0
jpayne@68 365 #undef CYTHON_FAST_GIL
jpayne@68 366 #define CYTHON_FAST_GIL 0
jpayne@68 367 #undef CYTHON_METH_FASTCALL
jpayne@68 368 #define CYTHON_METH_FASTCALL 0
jpayne@68 369 #undef CYTHON_FAST_PYCALL
jpayne@68 370 #define CYTHON_FAST_PYCALL 0
jpayne@68 371 #ifndef CYTHON_PEP487_INIT_SUBCLASS
jpayne@68 372 #define CYTHON_PEP487_INIT_SUBCLASS 1
jpayne@68 373 #endif
jpayne@68 374 #undef CYTHON_PEP489_MULTI_PHASE_INIT
jpayne@68 375 #define CYTHON_PEP489_MULTI_PHASE_INIT 0
jpayne@68 376 #undef CYTHON_USE_MODULE_STATE
jpayne@68 377 #define CYTHON_USE_MODULE_STATE 1
jpayne@68 378 #ifndef CYTHON_USE_TP_FINALIZE
jpayne@68 379 #define CYTHON_USE_TP_FINALIZE 0
jpayne@68 380 #endif
jpayne@68 381 #undef CYTHON_USE_DICT_VERSIONS
jpayne@68 382 #define CYTHON_USE_DICT_VERSIONS 0
jpayne@68 383 #undef CYTHON_USE_EXC_INFO_STACK
jpayne@68 384 #define CYTHON_USE_EXC_INFO_STACK 0
jpayne@68 385 #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
jpayne@68 386 #define CYTHON_UPDATE_DESCRIPTOR_DOC 0
jpayne@68 387 #endif
jpayne@68 388 #undef CYTHON_USE_FREELISTS
jpayne@68 389 #define CYTHON_USE_FREELISTS 0
jpayne@68 390 #elif defined(Py_GIL_DISABLED) || defined(Py_NOGIL)
jpayne@68 391 #define CYTHON_COMPILING_IN_PYPY 0
jpayne@68 392 #define CYTHON_COMPILING_IN_CPYTHON 0
jpayne@68 393 #define CYTHON_COMPILING_IN_LIMITED_API 0
jpayne@68 394 #define CYTHON_COMPILING_IN_GRAAL 0
jpayne@68 395 #define CYTHON_COMPILING_IN_NOGIL 1
jpayne@68 396 #ifndef CYTHON_USE_TYPE_SLOTS
jpayne@68 397 #define CYTHON_USE_TYPE_SLOTS 1
jpayne@68 398 #endif
jpayne@68 399 #ifndef CYTHON_USE_TYPE_SPECS
jpayne@68 400 #define CYTHON_USE_TYPE_SPECS 0
jpayne@68 401 #endif
jpayne@68 402 #undef CYTHON_USE_PYTYPE_LOOKUP
jpayne@68 403 #define CYTHON_USE_PYTYPE_LOOKUP 0
jpayne@68 404 #ifndef CYTHON_USE_ASYNC_SLOTS
jpayne@68 405 #define CYTHON_USE_ASYNC_SLOTS 1
jpayne@68 406 #endif
jpayne@68 407 #ifndef CYTHON_USE_PYLONG_INTERNALS
jpayne@68 408 #define CYTHON_USE_PYLONG_INTERNALS 0
jpayne@68 409 #endif
jpayne@68 410 #undef CYTHON_USE_PYLIST_INTERNALS
jpayne@68 411 #define CYTHON_USE_PYLIST_INTERNALS 0
jpayne@68 412 #ifndef CYTHON_USE_UNICODE_INTERNALS
jpayne@68 413 #define CYTHON_USE_UNICODE_INTERNALS 1
jpayne@68 414 #endif
jpayne@68 415 #undef CYTHON_USE_UNICODE_WRITER
jpayne@68 416 #define CYTHON_USE_UNICODE_WRITER 0
jpayne@68 417 #ifndef CYTHON_AVOID_BORROWED_REFS
jpayne@68 418 #define CYTHON_AVOID_BORROWED_REFS 0
jpayne@68 419 #endif
jpayne@68 420 #ifndef CYTHON_ASSUME_SAFE_MACROS
jpayne@68 421 #define CYTHON_ASSUME_SAFE_MACROS 1
jpayne@68 422 #endif
jpayne@68 423 #ifndef CYTHON_UNPACK_METHODS
jpayne@68 424 #define CYTHON_UNPACK_METHODS 1
jpayne@68 425 #endif
jpayne@68 426 #undef CYTHON_FAST_THREAD_STATE
jpayne@68 427 #define CYTHON_FAST_THREAD_STATE 0
jpayne@68 428 #undef CYTHON_FAST_GIL
jpayne@68 429 #define CYTHON_FAST_GIL 0
jpayne@68 430 #ifndef CYTHON_METH_FASTCALL
jpayne@68 431 #define CYTHON_METH_FASTCALL 1
jpayne@68 432 #endif
jpayne@68 433 #undef CYTHON_FAST_PYCALL
jpayne@68 434 #define CYTHON_FAST_PYCALL 0
jpayne@68 435 #ifndef CYTHON_PEP487_INIT_SUBCLASS
jpayne@68 436 #define CYTHON_PEP487_INIT_SUBCLASS 1
jpayne@68 437 #endif
jpayne@68 438 #ifndef CYTHON_PEP489_MULTI_PHASE_INIT
jpayne@68 439 #define CYTHON_PEP489_MULTI_PHASE_INIT 1
jpayne@68 440 #endif
jpayne@68 441 #ifndef CYTHON_USE_MODULE_STATE
jpayne@68 442 #define CYTHON_USE_MODULE_STATE 0
jpayne@68 443 #endif
jpayne@68 444 #ifndef CYTHON_USE_TP_FINALIZE
jpayne@68 445 #define CYTHON_USE_TP_FINALIZE 1
jpayne@68 446 #endif
jpayne@68 447 #undef CYTHON_USE_DICT_VERSIONS
jpayne@68 448 #define CYTHON_USE_DICT_VERSIONS 0
jpayne@68 449 #undef CYTHON_USE_EXC_INFO_STACK
jpayne@68 450 #define CYTHON_USE_EXC_INFO_STACK 0
jpayne@68 451 #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
jpayne@68 452 #define CYTHON_UPDATE_DESCRIPTOR_DOC 1
jpayne@68 453 #endif
jpayne@68 454 #ifndef CYTHON_USE_FREELISTS
jpayne@68 455 #define CYTHON_USE_FREELISTS 0
jpayne@68 456 #endif
jpayne@68 457 #else
jpayne@68 458 #define CYTHON_COMPILING_IN_PYPY 0
jpayne@68 459 #define CYTHON_COMPILING_IN_CPYTHON 1
jpayne@68 460 #define CYTHON_COMPILING_IN_LIMITED_API 0
jpayne@68 461 #define CYTHON_COMPILING_IN_GRAAL 0
jpayne@68 462 #define CYTHON_COMPILING_IN_NOGIL 0
jpayne@68 463 #ifndef CYTHON_USE_TYPE_SLOTS
jpayne@68 464 #define CYTHON_USE_TYPE_SLOTS 1
jpayne@68 465 #endif
jpayne@68 466 #ifndef CYTHON_USE_TYPE_SPECS
jpayne@68 467 #define CYTHON_USE_TYPE_SPECS 0
jpayne@68 468 #endif
jpayne@68 469 #ifndef CYTHON_USE_PYTYPE_LOOKUP
jpayne@68 470 #define CYTHON_USE_PYTYPE_LOOKUP 1
jpayne@68 471 #endif
jpayne@68 472 #if PY_MAJOR_VERSION < 3
jpayne@68 473 #undef CYTHON_USE_ASYNC_SLOTS
jpayne@68 474 #define CYTHON_USE_ASYNC_SLOTS 0
jpayne@68 475 #elif !defined(CYTHON_USE_ASYNC_SLOTS)
jpayne@68 476 #define CYTHON_USE_ASYNC_SLOTS 1
jpayne@68 477 #endif
jpayne@68 478 #ifndef CYTHON_USE_PYLONG_INTERNALS
jpayne@68 479 #define CYTHON_USE_PYLONG_INTERNALS 1
jpayne@68 480 #endif
jpayne@68 481 #ifndef CYTHON_USE_PYLIST_INTERNALS
jpayne@68 482 #define CYTHON_USE_PYLIST_INTERNALS 1
jpayne@68 483 #endif
jpayne@68 484 #ifndef CYTHON_USE_UNICODE_INTERNALS
jpayne@68 485 #define CYTHON_USE_UNICODE_INTERNALS 1
jpayne@68 486 #endif
jpayne@68 487 #if PY_VERSION_HEX < 0x030300F0 || PY_VERSION_HEX >= 0x030B00A2
jpayne@68 488 #undef CYTHON_USE_UNICODE_WRITER
jpayne@68 489 #define CYTHON_USE_UNICODE_WRITER 0
jpayne@68 490 #elif !defined(CYTHON_USE_UNICODE_WRITER)
jpayne@68 491 #define CYTHON_USE_UNICODE_WRITER 1
jpayne@68 492 #endif
jpayne@68 493 #ifndef CYTHON_AVOID_BORROWED_REFS
jpayne@68 494 #define CYTHON_AVOID_BORROWED_REFS 0
jpayne@68 495 #endif
jpayne@68 496 #ifndef CYTHON_ASSUME_SAFE_MACROS
jpayne@68 497 #define CYTHON_ASSUME_SAFE_MACROS 1
jpayne@68 498 #endif
jpayne@68 499 #ifndef CYTHON_UNPACK_METHODS
jpayne@68 500 #define CYTHON_UNPACK_METHODS 1
jpayne@68 501 #endif
jpayne@68 502 #ifndef CYTHON_FAST_THREAD_STATE
jpayne@68 503 #define CYTHON_FAST_THREAD_STATE 1
jpayne@68 504 #endif
jpayne@68 505 #ifndef CYTHON_FAST_GIL
jpayne@68 506 #define CYTHON_FAST_GIL (PY_MAJOR_VERSION < 3 || PY_VERSION_HEX >= 0x03060000 && PY_VERSION_HEX < 0x030C00A6)
jpayne@68 507 #endif
jpayne@68 508 #ifndef CYTHON_METH_FASTCALL
jpayne@68 509 #define CYTHON_METH_FASTCALL (PY_VERSION_HEX >= 0x030700A1)
jpayne@68 510 #endif
jpayne@68 511 #ifndef CYTHON_FAST_PYCALL
jpayne@68 512 #define CYTHON_FAST_PYCALL 1
jpayne@68 513 #endif
jpayne@68 514 #ifndef CYTHON_PEP487_INIT_SUBCLASS
jpayne@68 515 #define CYTHON_PEP487_INIT_SUBCLASS 1
jpayne@68 516 #endif
jpayne@68 517 #if PY_VERSION_HEX < 0x03050000
jpayne@68 518 #undef CYTHON_PEP489_MULTI_PHASE_INIT
jpayne@68 519 #define CYTHON_PEP489_MULTI_PHASE_INIT 0
jpayne@68 520 #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT)
jpayne@68 521 #define CYTHON_PEP489_MULTI_PHASE_INIT 1
jpayne@68 522 #endif
jpayne@68 523 #ifndef CYTHON_USE_MODULE_STATE
jpayne@68 524 #define CYTHON_USE_MODULE_STATE 0
jpayne@68 525 #endif
jpayne@68 526 #if PY_VERSION_HEX < 0x030400a1
jpayne@68 527 #undef CYTHON_USE_TP_FINALIZE
jpayne@68 528 #define CYTHON_USE_TP_FINALIZE 0
jpayne@68 529 #elif !defined(CYTHON_USE_TP_FINALIZE)
jpayne@68 530 #define CYTHON_USE_TP_FINALIZE 1
jpayne@68 531 #endif
jpayne@68 532 #if PY_VERSION_HEX < 0x030600B1
jpayne@68 533 #undef CYTHON_USE_DICT_VERSIONS
jpayne@68 534 #define CYTHON_USE_DICT_VERSIONS 0
jpayne@68 535 #elif !defined(CYTHON_USE_DICT_VERSIONS)
jpayne@68 536 #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX < 0x030C00A5)
jpayne@68 537 #endif
jpayne@68 538 #if PY_VERSION_HEX < 0x030700A3
jpayne@68 539 #undef CYTHON_USE_EXC_INFO_STACK
jpayne@68 540 #define CYTHON_USE_EXC_INFO_STACK 0
jpayne@68 541 #elif !defined(CYTHON_USE_EXC_INFO_STACK)
jpayne@68 542 #define CYTHON_USE_EXC_INFO_STACK 1
jpayne@68 543 #endif
jpayne@68 544 #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
jpayne@68 545 #define CYTHON_UPDATE_DESCRIPTOR_DOC 1
jpayne@68 546 #endif
jpayne@68 547 #ifndef CYTHON_USE_FREELISTS
jpayne@68 548 #define CYTHON_USE_FREELISTS 1
jpayne@68 549 #endif
jpayne@68 550 #endif
jpayne@68 551 #if !defined(CYTHON_FAST_PYCCALL)
jpayne@68 552 #define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1)
jpayne@68 553 #endif
jpayne@68 554 #if !defined(CYTHON_VECTORCALL)
jpayne@68 555 #define CYTHON_VECTORCALL (CYTHON_FAST_PYCCALL && PY_VERSION_HEX >= 0x030800B1)
jpayne@68 556 #endif
jpayne@68 557 #define CYTHON_BACKPORT_VECTORCALL (CYTHON_METH_FASTCALL && PY_VERSION_HEX < 0x030800B1)
jpayne@68 558 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 559 #if PY_MAJOR_VERSION < 3
jpayne@68 560 #include "longintrepr.h"
jpayne@68 561 #endif
jpayne@68 562 #undef SHIFT
jpayne@68 563 #undef BASE
jpayne@68 564 #undef MASK
jpayne@68 565 #ifdef SIZEOF_VOID_P
jpayne@68 566 enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) };
jpayne@68 567 #endif
jpayne@68 568 #endif
jpayne@68 569 #ifndef __has_attribute
jpayne@68 570 #define __has_attribute(x) 0
jpayne@68 571 #endif
jpayne@68 572 #ifndef __has_cpp_attribute
jpayne@68 573 #define __has_cpp_attribute(x) 0
jpayne@68 574 #endif
jpayne@68 575 #ifndef CYTHON_RESTRICT
jpayne@68 576 #if defined(__GNUC__)
jpayne@68 577 #define CYTHON_RESTRICT __restrict__
jpayne@68 578 #elif defined(_MSC_VER) && _MSC_VER >= 1400
jpayne@68 579 #define CYTHON_RESTRICT __restrict
jpayne@68 580 #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
jpayne@68 581 #define CYTHON_RESTRICT restrict
jpayne@68 582 #else
jpayne@68 583 #define CYTHON_RESTRICT
jpayne@68 584 #endif
jpayne@68 585 #endif
jpayne@68 586 #ifndef CYTHON_UNUSED
jpayne@68 587 #if defined(__cplusplus)
jpayne@68 588 /* for clang __has_cpp_attribute(maybe_unused) is true even before C++17
jpayne@68 589 * but leads to warnings with -pedantic, since it is a C++17 feature */
jpayne@68 590 #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L)
jpayne@68 591 #if __has_cpp_attribute(maybe_unused)
jpayne@68 592 #define CYTHON_UNUSED [[maybe_unused]]
jpayne@68 593 #endif
jpayne@68 594 #endif
jpayne@68 595 #endif
jpayne@68 596 #endif
jpayne@68 597 #ifndef CYTHON_UNUSED
jpayne@68 598 # if defined(__GNUC__)
jpayne@68 599 # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
jpayne@68 600 # define CYTHON_UNUSED __attribute__ ((__unused__))
jpayne@68 601 # else
jpayne@68 602 # define CYTHON_UNUSED
jpayne@68 603 # endif
jpayne@68 604 # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
jpayne@68 605 # define CYTHON_UNUSED __attribute__ ((__unused__))
jpayne@68 606 # else
jpayne@68 607 # define CYTHON_UNUSED
jpayne@68 608 # endif
jpayne@68 609 #endif
jpayne@68 610 #ifndef CYTHON_UNUSED_VAR
jpayne@68 611 # if defined(__cplusplus)
jpayne@68 612 template<class T> void CYTHON_UNUSED_VAR( const T& ) { }
jpayne@68 613 # else
jpayne@68 614 # define CYTHON_UNUSED_VAR(x) (void)(x)
jpayne@68 615 # endif
jpayne@68 616 #endif
jpayne@68 617 #ifndef CYTHON_MAYBE_UNUSED_VAR
jpayne@68 618 #define CYTHON_MAYBE_UNUSED_VAR(x) CYTHON_UNUSED_VAR(x)
jpayne@68 619 #endif
jpayne@68 620 #ifndef CYTHON_NCP_UNUSED
jpayne@68 621 # if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 622 # define CYTHON_NCP_UNUSED
jpayne@68 623 # else
jpayne@68 624 # define CYTHON_NCP_UNUSED CYTHON_UNUSED
jpayne@68 625 # endif
jpayne@68 626 #endif
jpayne@68 627 #ifndef CYTHON_USE_CPP_STD_MOVE
jpayne@68 628 #if defined(__cplusplus) && (\
jpayne@68 629 __cplusplus >= 201103L || (defined(_MSC_VER) && _MSC_VER >= 1600))
jpayne@68 630 #define CYTHON_USE_CPP_STD_MOVE 1
jpayne@68 631 #else
jpayne@68 632 #define CYTHON_USE_CPP_STD_MOVE 0
jpayne@68 633 #endif
jpayne@68 634 #endif
jpayne@68 635 #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None)
jpayne@68 636 #ifdef _MSC_VER
jpayne@68 637 #ifndef _MSC_STDINT_H_
jpayne@68 638 #if _MSC_VER < 1300
jpayne@68 639 typedef unsigned char uint8_t;
jpayne@68 640 typedef unsigned short uint16_t;
jpayne@68 641 typedef unsigned int uint32_t;
jpayne@68 642 #else
jpayne@68 643 typedef unsigned __int8 uint8_t;
jpayne@68 644 typedef unsigned __int16 uint16_t;
jpayne@68 645 typedef unsigned __int32 uint32_t;
jpayne@68 646 #endif
jpayne@68 647 #endif
jpayne@68 648 #if _MSC_VER < 1300
jpayne@68 649 #ifdef _WIN64
jpayne@68 650 typedef unsigned long long __pyx_uintptr_t;
jpayne@68 651 #else
jpayne@68 652 typedef unsigned int __pyx_uintptr_t;
jpayne@68 653 #endif
jpayne@68 654 #else
jpayne@68 655 #ifdef _WIN64
jpayne@68 656 typedef unsigned __int64 __pyx_uintptr_t;
jpayne@68 657 #else
jpayne@68 658 typedef unsigned __int32 __pyx_uintptr_t;
jpayne@68 659 #endif
jpayne@68 660 #endif
jpayne@68 661 #else
jpayne@68 662 #include <stdint.h>
jpayne@68 663 typedef uintptr_t __pyx_uintptr_t;
jpayne@68 664 #endif
jpayne@68 665 #ifndef CYTHON_FALLTHROUGH
jpayne@68 666 #if defined(__cplusplus)
jpayne@68 667 /* for clang __has_cpp_attribute(fallthrough) is true even before C++17
jpayne@68 668 * but leads to warnings with -pedantic, since it is a C++17 feature */
jpayne@68 669 #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L)
jpayne@68 670 #if __has_cpp_attribute(fallthrough)
jpayne@68 671 #define CYTHON_FALLTHROUGH [[fallthrough]]
jpayne@68 672 #endif
jpayne@68 673 #endif
jpayne@68 674 #ifndef CYTHON_FALLTHROUGH
jpayne@68 675 #if __has_cpp_attribute(clang::fallthrough)
jpayne@68 676 #define CYTHON_FALLTHROUGH [[clang::fallthrough]]
jpayne@68 677 #elif __has_cpp_attribute(gnu::fallthrough)
jpayne@68 678 #define CYTHON_FALLTHROUGH [[gnu::fallthrough]]
jpayne@68 679 #endif
jpayne@68 680 #endif
jpayne@68 681 #endif
jpayne@68 682 #ifndef CYTHON_FALLTHROUGH
jpayne@68 683 #if __has_attribute(fallthrough)
jpayne@68 684 #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
jpayne@68 685 #else
jpayne@68 686 #define CYTHON_FALLTHROUGH
jpayne@68 687 #endif
jpayne@68 688 #endif
jpayne@68 689 #if defined(__clang__) && defined(__apple_build_version__)
jpayne@68 690 #if __apple_build_version__ < 7000000
jpayne@68 691 #undef CYTHON_FALLTHROUGH
jpayne@68 692 #define CYTHON_FALLTHROUGH
jpayne@68 693 #endif
jpayne@68 694 #endif
jpayne@68 695 #endif
jpayne@68 696 #ifdef __cplusplus
jpayne@68 697 template <typename T>
jpayne@68 698 struct __PYX_IS_UNSIGNED_IMPL {static const bool value = T(0) < T(-1);};
jpayne@68 699 #define __PYX_IS_UNSIGNED(type) (__PYX_IS_UNSIGNED_IMPL<type>::value)
jpayne@68 700 #else
jpayne@68 701 #define __PYX_IS_UNSIGNED(type) (((type)-1) > 0)
jpayne@68 702 #endif
jpayne@68 703 #if CYTHON_COMPILING_IN_PYPY == 1
jpayne@68 704 #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x030A0000)
jpayne@68 705 #else
jpayne@68 706 #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000)
jpayne@68 707 #endif
jpayne@68 708 #define __PYX_REINTERPRET_FUNCION(func_pointer, other_pointer) ((func_pointer)(void(*)(void))(other_pointer))
jpayne@68 709
jpayne@68 710 #ifndef CYTHON_INLINE
jpayne@68 711 #if defined(__clang__)
jpayne@68 712 #define CYTHON_INLINE __inline__ __attribute__ ((__unused__))
jpayne@68 713 #elif defined(__GNUC__)
jpayne@68 714 #define CYTHON_INLINE __inline__
jpayne@68 715 #elif defined(_MSC_VER)
jpayne@68 716 #define CYTHON_INLINE __inline
jpayne@68 717 #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
jpayne@68 718 #define CYTHON_INLINE inline
jpayne@68 719 #else
jpayne@68 720 #define CYTHON_INLINE
jpayne@68 721 #endif
jpayne@68 722 #endif
jpayne@68 723
jpayne@68 724 #define __PYX_BUILD_PY_SSIZE_T "n"
jpayne@68 725 #define CYTHON_FORMAT_SSIZE_T "z"
jpayne@68 726 #if PY_MAJOR_VERSION < 3
jpayne@68 727 #define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
jpayne@68 728 #define __Pyx_DefaultClassType PyClass_Type
jpayne@68 729 #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
jpayne@68 730 PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
jpayne@68 731 #else
jpayne@68 732 #define __Pyx_BUILTIN_MODULE_NAME "builtins"
jpayne@68 733 #define __Pyx_DefaultClassType PyType_Type
jpayne@68 734 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 735 static CYTHON_INLINE PyObject* __Pyx_PyCode_New(int a, int p, int k, int l, int s, int f,
jpayne@68 736 PyObject *code, PyObject *c, PyObject* n, PyObject *v,
jpayne@68 737 PyObject *fv, PyObject *cell, PyObject* fn,
jpayne@68 738 PyObject *name, int fline, PyObject *lnos) {
jpayne@68 739 PyObject *exception_table = NULL;
jpayne@68 740 PyObject *types_module=NULL, *code_type=NULL, *result=NULL;
jpayne@68 741 #if __PYX_LIMITED_VERSION_HEX < 0x030B0000
jpayne@68 742 PyObject *version_info;
jpayne@68 743 PyObject *py_minor_version = NULL;
jpayne@68 744 #endif
jpayne@68 745 long minor_version = 0;
jpayne@68 746 PyObject *type, *value, *traceback;
jpayne@68 747 PyErr_Fetch(&type, &value, &traceback);
jpayne@68 748 #if __PYX_LIMITED_VERSION_HEX >= 0x030B0000
jpayne@68 749 minor_version = 11;
jpayne@68 750 #else
jpayne@68 751 if (!(version_info = PySys_GetObject("version_info"))) goto end;
jpayne@68 752 if (!(py_minor_version = PySequence_GetItem(version_info, 1))) goto end;
jpayne@68 753 minor_version = PyLong_AsLong(py_minor_version);
jpayne@68 754 Py_DECREF(py_minor_version);
jpayne@68 755 if (minor_version == -1 && PyErr_Occurred()) goto end;
jpayne@68 756 #endif
jpayne@68 757 if (!(types_module = PyImport_ImportModule("types"))) goto end;
jpayne@68 758 if (!(code_type = PyObject_GetAttrString(types_module, "CodeType"))) goto end;
jpayne@68 759 if (minor_version <= 7) {
jpayne@68 760 (void)p;
jpayne@68 761 result = PyObject_CallFunction(code_type, "iiiiiOOOOOOiOO", a, k, l, s, f, code,
jpayne@68 762 c, n, v, fn, name, fline, lnos, fv, cell);
jpayne@68 763 } else if (minor_version <= 10) {
jpayne@68 764 result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOiOO", a,p, k, l, s, f, code,
jpayne@68 765 c, n, v, fn, name, fline, lnos, fv, cell);
jpayne@68 766 } else {
jpayne@68 767 if (!(exception_table = PyBytes_FromStringAndSize(NULL, 0))) goto end;
jpayne@68 768 result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOOiOO", a,p, k, l, s, f, code,
jpayne@68 769 c, n, v, fn, name, name, fline, lnos, exception_table, fv, cell);
jpayne@68 770 }
jpayne@68 771 end:
jpayne@68 772 Py_XDECREF(code_type);
jpayne@68 773 Py_XDECREF(exception_table);
jpayne@68 774 Py_XDECREF(types_module);
jpayne@68 775 if (type) {
jpayne@68 776 PyErr_Restore(type, value, traceback);
jpayne@68 777 }
jpayne@68 778 return result;
jpayne@68 779 }
jpayne@68 780 #ifndef CO_OPTIMIZED
jpayne@68 781 #define CO_OPTIMIZED 0x0001
jpayne@68 782 #endif
jpayne@68 783 #ifndef CO_NEWLOCALS
jpayne@68 784 #define CO_NEWLOCALS 0x0002
jpayne@68 785 #endif
jpayne@68 786 #ifndef CO_VARARGS
jpayne@68 787 #define CO_VARARGS 0x0004
jpayne@68 788 #endif
jpayne@68 789 #ifndef CO_VARKEYWORDS
jpayne@68 790 #define CO_VARKEYWORDS 0x0008
jpayne@68 791 #endif
jpayne@68 792 #ifndef CO_ASYNC_GENERATOR
jpayne@68 793 #define CO_ASYNC_GENERATOR 0x0200
jpayne@68 794 #endif
jpayne@68 795 #ifndef CO_GENERATOR
jpayne@68 796 #define CO_GENERATOR 0x0020
jpayne@68 797 #endif
jpayne@68 798 #ifndef CO_COROUTINE
jpayne@68 799 #define CO_COROUTINE 0x0080
jpayne@68 800 #endif
jpayne@68 801 #elif PY_VERSION_HEX >= 0x030B0000
jpayne@68 802 static CYTHON_INLINE PyCodeObject* __Pyx_PyCode_New(int a, int p, int k, int l, int s, int f,
jpayne@68 803 PyObject *code, PyObject *c, PyObject* n, PyObject *v,
jpayne@68 804 PyObject *fv, PyObject *cell, PyObject* fn,
jpayne@68 805 PyObject *name, int fline, PyObject *lnos) {
jpayne@68 806 PyCodeObject *result;
jpayne@68 807 PyObject *empty_bytes = PyBytes_FromStringAndSize("", 0);
jpayne@68 808 if (!empty_bytes) return NULL;
jpayne@68 809 result =
jpayne@68 810 #if PY_VERSION_HEX >= 0x030C0000
jpayne@68 811 PyUnstable_Code_NewWithPosOnlyArgs
jpayne@68 812 #else
jpayne@68 813 PyCode_NewWithPosOnlyArgs
jpayne@68 814 #endif
jpayne@68 815 (a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, name, fline, lnos, empty_bytes);
jpayne@68 816 Py_DECREF(empty_bytes);
jpayne@68 817 return result;
jpayne@68 818 }
jpayne@68 819 #elif PY_VERSION_HEX >= 0x030800B2 && !CYTHON_COMPILING_IN_PYPY
jpayne@68 820 #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
jpayne@68 821 PyCode_NewWithPosOnlyArgs(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
jpayne@68 822 #else
jpayne@68 823 #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
jpayne@68 824 PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
jpayne@68 825 #endif
jpayne@68 826 #endif
jpayne@68 827 #if PY_VERSION_HEX >= 0x030900A4 || defined(Py_IS_TYPE)
jpayne@68 828 #define __Pyx_IS_TYPE(ob, type) Py_IS_TYPE(ob, type)
jpayne@68 829 #else
jpayne@68 830 #define __Pyx_IS_TYPE(ob, type) (((const PyObject*)ob)->ob_type == (type))
jpayne@68 831 #endif
jpayne@68 832 #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_Is)
jpayne@68 833 #define __Pyx_Py_Is(x, y) Py_Is(x, y)
jpayne@68 834 #else
jpayne@68 835 #define __Pyx_Py_Is(x, y) ((x) == (y))
jpayne@68 836 #endif
jpayne@68 837 #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsNone)
jpayne@68 838 #define __Pyx_Py_IsNone(ob) Py_IsNone(ob)
jpayne@68 839 #else
jpayne@68 840 #define __Pyx_Py_IsNone(ob) __Pyx_Py_Is((ob), Py_None)
jpayne@68 841 #endif
jpayne@68 842 #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsTrue)
jpayne@68 843 #define __Pyx_Py_IsTrue(ob) Py_IsTrue(ob)
jpayne@68 844 #else
jpayne@68 845 #define __Pyx_Py_IsTrue(ob) __Pyx_Py_Is((ob), Py_True)
jpayne@68 846 #endif
jpayne@68 847 #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsFalse)
jpayne@68 848 #define __Pyx_Py_IsFalse(ob) Py_IsFalse(ob)
jpayne@68 849 #else
jpayne@68 850 #define __Pyx_Py_IsFalse(ob) __Pyx_Py_Is((ob), Py_False)
jpayne@68 851 #endif
jpayne@68 852 #define __Pyx_NoneAsNull(obj) (__Pyx_Py_IsNone(obj) ? NULL : (obj))
jpayne@68 853 #if PY_VERSION_HEX >= 0x030900F0 && !CYTHON_COMPILING_IN_PYPY
jpayne@68 854 #define __Pyx_PyObject_GC_IsFinalized(o) PyObject_GC_IsFinalized(o)
jpayne@68 855 #else
jpayne@68 856 #define __Pyx_PyObject_GC_IsFinalized(o) _PyGC_FINALIZED(o)
jpayne@68 857 #endif
jpayne@68 858 #ifndef CO_COROUTINE
jpayne@68 859 #define CO_COROUTINE 0x80
jpayne@68 860 #endif
jpayne@68 861 #ifndef CO_ASYNC_GENERATOR
jpayne@68 862 #define CO_ASYNC_GENERATOR 0x200
jpayne@68 863 #endif
jpayne@68 864 #ifndef Py_TPFLAGS_CHECKTYPES
jpayne@68 865 #define Py_TPFLAGS_CHECKTYPES 0
jpayne@68 866 #endif
jpayne@68 867 #ifndef Py_TPFLAGS_HAVE_INDEX
jpayne@68 868 #define Py_TPFLAGS_HAVE_INDEX 0
jpayne@68 869 #endif
jpayne@68 870 #ifndef Py_TPFLAGS_HAVE_NEWBUFFER
jpayne@68 871 #define Py_TPFLAGS_HAVE_NEWBUFFER 0
jpayne@68 872 #endif
jpayne@68 873 #ifndef Py_TPFLAGS_HAVE_FINALIZE
jpayne@68 874 #define Py_TPFLAGS_HAVE_FINALIZE 0
jpayne@68 875 #endif
jpayne@68 876 #ifndef Py_TPFLAGS_SEQUENCE
jpayne@68 877 #define Py_TPFLAGS_SEQUENCE 0
jpayne@68 878 #endif
jpayne@68 879 #ifndef Py_TPFLAGS_MAPPING
jpayne@68 880 #define Py_TPFLAGS_MAPPING 0
jpayne@68 881 #endif
jpayne@68 882 #ifndef METH_STACKLESS
jpayne@68 883 #define METH_STACKLESS 0
jpayne@68 884 #endif
jpayne@68 885 #if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL)
jpayne@68 886 #ifndef METH_FASTCALL
jpayne@68 887 #define METH_FASTCALL 0x80
jpayne@68 888 #endif
jpayne@68 889 typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs);
jpayne@68 890 typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args,
jpayne@68 891 Py_ssize_t nargs, PyObject *kwnames);
jpayne@68 892 #else
jpayne@68 893 #if PY_VERSION_HEX >= 0x030d00A4
jpayne@68 894 # define __Pyx_PyCFunctionFast PyCFunctionFast
jpayne@68 895 # define __Pyx_PyCFunctionFastWithKeywords PyCFunctionFastWithKeywords
jpayne@68 896 #else
jpayne@68 897 # define __Pyx_PyCFunctionFast _PyCFunctionFast
jpayne@68 898 # define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords
jpayne@68 899 #endif
jpayne@68 900 #endif
jpayne@68 901 #if CYTHON_METH_FASTCALL
jpayne@68 902 #define __Pyx_METH_FASTCALL METH_FASTCALL
jpayne@68 903 #define __Pyx_PyCFunction_FastCall __Pyx_PyCFunctionFast
jpayne@68 904 #define __Pyx_PyCFunction_FastCallWithKeywords __Pyx_PyCFunctionFastWithKeywords
jpayne@68 905 #else
jpayne@68 906 #define __Pyx_METH_FASTCALL METH_VARARGS
jpayne@68 907 #define __Pyx_PyCFunction_FastCall PyCFunction
jpayne@68 908 #define __Pyx_PyCFunction_FastCallWithKeywords PyCFunctionWithKeywords
jpayne@68 909 #endif
jpayne@68 910 #if CYTHON_VECTORCALL
jpayne@68 911 #define __pyx_vectorcallfunc vectorcallfunc
jpayne@68 912 #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET PY_VECTORCALL_ARGUMENTS_OFFSET
jpayne@68 913 #define __Pyx_PyVectorcall_NARGS(n) PyVectorcall_NARGS((size_t)(n))
jpayne@68 914 #elif CYTHON_BACKPORT_VECTORCALL
jpayne@68 915 typedef PyObject *(*__pyx_vectorcallfunc)(PyObject *callable, PyObject *const *args,
jpayne@68 916 size_t nargsf, PyObject *kwnames);
jpayne@68 917 #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET ((size_t)1 << (8 * sizeof(size_t) - 1))
jpayne@68 918 #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(((size_t)(n)) & ~__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET))
jpayne@68 919 #else
jpayne@68 920 #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET 0
jpayne@68 921 #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(n))
jpayne@68 922 #endif
jpayne@68 923 #if PY_MAJOR_VERSION >= 0x030900B1
jpayne@68 924 #define __Pyx_PyCFunction_CheckExact(func) PyCFunction_CheckExact(func)
jpayne@68 925 #else
jpayne@68 926 #define __Pyx_PyCFunction_CheckExact(func) PyCFunction_Check(func)
jpayne@68 927 #endif
jpayne@68 928 #define __Pyx_CyOrPyCFunction_Check(func) PyCFunction_Check(func)
jpayne@68 929 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 930 #define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) (((PyCFunctionObject*)(func))->m_ml->ml_meth)
jpayne@68 931 #elif !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 932 #define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) PyCFunction_GET_FUNCTION(func)
jpayne@68 933 #endif
jpayne@68 934 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 935 #define __Pyx_CyOrPyCFunction_GET_FLAGS(func) (((PyCFunctionObject*)(func))->m_ml->ml_flags)
jpayne@68 936 static CYTHON_INLINE PyObject* __Pyx_CyOrPyCFunction_GET_SELF(PyObject *func) {
jpayne@68 937 return (__Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_STATIC) ? NULL : ((PyCFunctionObject*)func)->m_self;
jpayne@68 938 }
jpayne@68 939 #endif
jpayne@68 940 static CYTHON_INLINE int __Pyx__IsSameCFunction(PyObject *func, void *cfunc) {
jpayne@68 941 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 942 return PyCFunction_Check(func) && PyCFunction_GetFunction(func) == (PyCFunction) cfunc;
jpayne@68 943 #else
jpayne@68 944 return PyCFunction_Check(func) && PyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc;
jpayne@68 945 #endif
jpayne@68 946 }
jpayne@68 947 #define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCFunction(func, cfunc)
jpayne@68 948 #if __PYX_LIMITED_VERSION_HEX < 0x030900B1
jpayne@68 949 #define __Pyx_PyType_FromModuleAndSpec(m, s, b) ((void)m, PyType_FromSpecWithBases(s, b))
jpayne@68 950 typedef PyObject *(*__Pyx_PyCMethod)(PyObject *, PyTypeObject *, PyObject *const *, size_t, PyObject *);
jpayne@68 951 #else
jpayne@68 952 #define __Pyx_PyType_FromModuleAndSpec(m, s, b) PyType_FromModuleAndSpec(m, s, b)
jpayne@68 953 #define __Pyx_PyCMethod PyCMethod
jpayne@68 954 #endif
jpayne@68 955 #ifndef METH_METHOD
jpayne@68 956 #define METH_METHOD 0x200
jpayne@68 957 #endif
jpayne@68 958 #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc)
jpayne@68 959 #define PyObject_Malloc(s) PyMem_Malloc(s)
jpayne@68 960 #define PyObject_Free(p) PyMem_Free(p)
jpayne@68 961 #define PyObject_Realloc(p) PyMem_Realloc(p)
jpayne@68 962 #endif
jpayne@68 963 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 964 #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0)
jpayne@68 965 #define __Pyx_PyFrame_SetLineNumber(frame, lineno)
jpayne@68 966 #else
jpayne@68 967 #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0)
jpayne@68 968 #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno)
jpayne@68 969 #endif
jpayne@68 970 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 971 #define __Pyx_PyThreadState_Current PyThreadState_Get()
jpayne@68 972 #elif !CYTHON_FAST_THREAD_STATE
jpayne@68 973 #define __Pyx_PyThreadState_Current PyThreadState_GET()
jpayne@68 974 #elif PY_VERSION_HEX >= 0x030d00A1
jpayne@68 975 #define __Pyx_PyThreadState_Current PyThreadState_GetUnchecked()
jpayne@68 976 #elif PY_VERSION_HEX >= 0x03060000
jpayne@68 977 #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet()
jpayne@68 978 #elif PY_VERSION_HEX >= 0x03000000
jpayne@68 979 #define __Pyx_PyThreadState_Current PyThreadState_GET()
jpayne@68 980 #else
jpayne@68 981 #define __Pyx_PyThreadState_Current _PyThreadState_Current
jpayne@68 982 #endif
jpayne@68 983 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 984 static CYTHON_INLINE void *__Pyx_PyModule_GetState(PyObject *op)
jpayne@68 985 {
jpayne@68 986 void *result;
jpayne@68 987 result = PyModule_GetState(op);
jpayne@68 988 if (!result)
jpayne@68 989 Py_FatalError("Couldn't find the module state");
jpayne@68 990 return result;
jpayne@68 991 }
jpayne@68 992 #endif
jpayne@68 993 #define __Pyx_PyObject_GetSlot(obj, name, func_ctype) __Pyx_PyType_GetSlot(Py_TYPE(obj), name, func_ctype)
jpayne@68 994 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 995 #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((func_ctype) PyType_GetSlot((type), Py_##name))
jpayne@68 996 #else
jpayne@68 997 #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((type)->name)
jpayne@68 998 #endif
jpayne@68 999 #if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT)
jpayne@68 1000 #include "pythread.h"
jpayne@68 1001 #define Py_tss_NEEDS_INIT 0
jpayne@68 1002 typedef int Py_tss_t;
jpayne@68 1003 static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) {
jpayne@68 1004 *key = PyThread_create_key();
jpayne@68 1005 return 0;
jpayne@68 1006 }
jpayne@68 1007 static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) {
jpayne@68 1008 Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t));
jpayne@68 1009 *key = Py_tss_NEEDS_INIT;
jpayne@68 1010 return key;
jpayne@68 1011 }
jpayne@68 1012 static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) {
jpayne@68 1013 PyObject_Free(key);
jpayne@68 1014 }
jpayne@68 1015 static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) {
jpayne@68 1016 return *key != Py_tss_NEEDS_INIT;
jpayne@68 1017 }
jpayne@68 1018 static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) {
jpayne@68 1019 PyThread_delete_key(*key);
jpayne@68 1020 *key = Py_tss_NEEDS_INIT;
jpayne@68 1021 }
jpayne@68 1022 static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) {
jpayne@68 1023 return PyThread_set_key_value(*key, value);
jpayne@68 1024 }
jpayne@68 1025 static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
jpayne@68 1026 return PyThread_get_key_value(*key);
jpayne@68 1027 }
jpayne@68 1028 #endif
jpayne@68 1029 #if PY_MAJOR_VERSION < 3
jpayne@68 1030 #if CYTHON_COMPILING_IN_PYPY
jpayne@68 1031 #if PYPY_VERSION_NUM < 0x07030600
jpayne@68 1032 #if defined(__cplusplus) && __cplusplus >= 201402L
jpayne@68 1033 [[deprecated("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6")]]
jpayne@68 1034 #elif defined(__GNUC__) || defined(__clang__)
jpayne@68 1035 __attribute__ ((__deprecated__("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6")))
jpayne@68 1036 #elif defined(_MSC_VER)
jpayne@68 1037 __declspec(deprecated("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6"))
jpayne@68 1038 #endif
jpayne@68 1039 static CYTHON_INLINE int PyGILState_Check(void) {
jpayne@68 1040 return 0;
jpayne@68 1041 }
jpayne@68 1042 #else // PYPY_VERSION_NUM < 0x07030600
jpayne@68 1043 #endif // PYPY_VERSION_NUM < 0x07030600
jpayne@68 1044 #else
jpayne@68 1045 static CYTHON_INLINE int PyGILState_Check(void) {
jpayne@68 1046 PyThreadState * tstate = _PyThreadState_Current;
jpayne@68 1047 return tstate && (tstate == PyGILState_GetThisThreadState());
jpayne@68 1048 }
jpayne@68 1049 #endif
jpayne@68 1050 #endif
jpayne@68 1051 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 || defined(_PyDict_NewPresized)
jpayne@68 1052 #define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n))
jpayne@68 1053 #else
jpayne@68 1054 #define __Pyx_PyDict_NewPresized(n) PyDict_New()
jpayne@68 1055 #endif
jpayne@68 1056 #if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION
jpayne@68 1057 #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y)
jpayne@68 1058 #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y)
jpayne@68 1059 #else
jpayne@68 1060 #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
jpayne@68 1061 #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
jpayne@68 1062 #endif
jpayne@68 1063 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX > 0x030600B4 && PY_VERSION_HEX < 0x030d0000 && CYTHON_USE_UNICODE_INTERNALS
jpayne@68 1064 #define __Pyx_PyDict_GetItemStrWithError(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash)
jpayne@68 1065 static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStr(PyObject *dict, PyObject *name) {
jpayne@68 1066 PyObject *res = __Pyx_PyDict_GetItemStrWithError(dict, name);
jpayne@68 1067 if (res == NULL) PyErr_Clear();
jpayne@68 1068 return res;
jpayne@68 1069 }
jpayne@68 1070 #elif PY_MAJOR_VERSION >= 3 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07020000)
jpayne@68 1071 #define __Pyx_PyDict_GetItemStrWithError PyDict_GetItemWithError
jpayne@68 1072 #define __Pyx_PyDict_GetItemStr PyDict_GetItem
jpayne@68 1073 #else
jpayne@68 1074 static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStrWithError(PyObject *dict, PyObject *name) {
jpayne@68 1075 #if CYTHON_COMPILING_IN_PYPY
jpayne@68 1076 return PyDict_GetItem(dict, name);
jpayne@68 1077 #else
jpayne@68 1078 PyDictEntry *ep;
jpayne@68 1079 PyDictObject *mp = (PyDictObject*) dict;
jpayne@68 1080 long hash = ((PyStringObject *) name)->ob_shash;
jpayne@68 1081 assert(hash != -1);
jpayne@68 1082 ep = (mp->ma_lookup)(mp, name, hash);
jpayne@68 1083 if (ep == NULL) {
jpayne@68 1084 return NULL;
jpayne@68 1085 }
jpayne@68 1086 return ep->me_value;
jpayne@68 1087 #endif
jpayne@68 1088 }
jpayne@68 1089 #define __Pyx_PyDict_GetItemStr PyDict_GetItem
jpayne@68 1090 #endif
jpayne@68 1091 #if CYTHON_USE_TYPE_SLOTS
jpayne@68 1092 #define __Pyx_PyType_GetFlags(tp) (((PyTypeObject *)tp)->tp_flags)
jpayne@68 1093 #define __Pyx_PyType_HasFeature(type, feature) ((__Pyx_PyType_GetFlags(type) & (feature)) != 0)
jpayne@68 1094 #define __Pyx_PyObject_GetIterNextFunc(obj) (Py_TYPE(obj)->tp_iternext)
jpayne@68 1095 #else
jpayne@68 1096 #define __Pyx_PyType_GetFlags(tp) (PyType_GetFlags((PyTypeObject *)tp))
jpayne@68 1097 #define __Pyx_PyType_HasFeature(type, feature) PyType_HasFeature(type, feature)
jpayne@68 1098 #define __Pyx_PyObject_GetIterNextFunc(obj) PyIter_Next
jpayne@68 1099 #endif
jpayne@68 1100 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 1101 #define __Pyx_SetItemOnTypeDict(tp, k, v) PyObject_GenericSetAttr((PyObject*)tp, k, v)
jpayne@68 1102 #else
jpayne@68 1103 #define __Pyx_SetItemOnTypeDict(tp, k, v) PyDict_SetItem(tp->tp_dict, k, v)
jpayne@68 1104 #endif
jpayne@68 1105 #if CYTHON_USE_TYPE_SPECS && PY_VERSION_HEX >= 0x03080000
jpayne@68 1106 #define __Pyx_PyHeapTypeObject_GC_Del(obj) {\
jpayne@68 1107 PyTypeObject *type = Py_TYPE((PyObject*)obj);\
jpayne@68 1108 assert(__Pyx_PyType_HasFeature(type, Py_TPFLAGS_HEAPTYPE));\
jpayne@68 1109 PyObject_GC_Del(obj);\
jpayne@68 1110 Py_DECREF(type);\
jpayne@68 1111 }
jpayne@68 1112 #else
jpayne@68 1113 #define __Pyx_PyHeapTypeObject_GC_Del(obj) PyObject_GC_Del(obj)
jpayne@68 1114 #endif
jpayne@68 1115 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 1116 #define CYTHON_PEP393_ENABLED 1
jpayne@68 1117 #define __Pyx_PyUnicode_READY(op) (0)
jpayne@68 1118 #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GetLength(u)
jpayne@68 1119 #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_ReadChar(u, i)
jpayne@68 1120 #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((void)u, 1114111U)
jpayne@68 1121 #define __Pyx_PyUnicode_KIND(u) ((void)u, (0))
jpayne@68 1122 #define __Pyx_PyUnicode_DATA(u) ((void*)u)
jpayne@68 1123 #define __Pyx_PyUnicode_READ(k, d, i) ((void)k, PyUnicode_ReadChar((PyObject*)(d), i))
jpayne@68 1124 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GetLength(u))
jpayne@68 1125 #elif PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
jpayne@68 1126 #define CYTHON_PEP393_ENABLED 1
jpayne@68 1127 #if PY_VERSION_HEX >= 0x030C0000
jpayne@68 1128 #define __Pyx_PyUnicode_READY(op) (0)
jpayne@68 1129 #else
jpayne@68 1130 #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\
jpayne@68 1131 0 : _PyUnicode_Ready((PyObject *)(op)))
jpayne@68 1132 #endif
jpayne@68 1133 #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u)
jpayne@68 1134 #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
jpayne@68 1135 #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u)
jpayne@68 1136 #define __Pyx_PyUnicode_KIND(u) ((int)PyUnicode_KIND(u))
jpayne@68 1137 #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u)
jpayne@68 1138 #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i)
jpayne@68 1139 #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, (Py_UCS4) ch)
jpayne@68 1140 #if PY_VERSION_HEX >= 0x030C0000
jpayne@68 1141 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_LENGTH(u))
jpayne@68 1142 #else
jpayne@68 1143 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03090000
jpayne@68 1144 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : ((PyCompactUnicodeObject *)(u))->wstr_length))
jpayne@68 1145 #else
jpayne@68 1146 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u)))
jpayne@68 1147 #endif
jpayne@68 1148 #endif
jpayne@68 1149 #else
jpayne@68 1150 #define CYTHON_PEP393_ENABLED 0
jpayne@68 1151 #define PyUnicode_1BYTE_KIND 1
jpayne@68 1152 #define PyUnicode_2BYTE_KIND 2
jpayne@68 1153 #define PyUnicode_4BYTE_KIND 4
jpayne@68 1154 #define __Pyx_PyUnicode_READY(op) (0)
jpayne@68 1155 #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u)
jpayne@68 1156 #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
jpayne@68 1157 #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535U : 1114111U)
jpayne@68 1158 #define __Pyx_PyUnicode_KIND(u) ((int)sizeof(Py_UNICODE))
jpayne@68 1159 #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u))
jpayne@68 1160 #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
jpayne@68 1161 #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = (Py_UNICODE) ch)
jpayne@68 1162 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u))
jpayne@68 1163 #endif
jpayne@68 1164 #if CYTHON_COMPILING_IN_PYPY
jpayne@68 1165 #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b)
jpayne@68 1166 #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b)
jpayne@68 1167 #else
jpayne@68 1168 #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b)
jpayne@68 1169 #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\
jpayne@68 1170 PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b))
jpayne@68 1171 #endif
jpayne@68 1172 #if CYTHON_COMPILING_IN_PYPY
jpayne@68 1173 #if !defined(PyUnicode_DecodeUnicodeEscape)
jpayne@68 1174 #define PyUnicode_DecodeUnicodeEscape(s, size, errors) PyUnicode_Decode(s, size, "unicode_escape", errors)
jpayne@68 1175 #endif
jpayne@68 1176 #if !defined(PyUnicode_Contains) || (PY_MAJOR_VERSION == 2 && PYPY_VERSION_NUM < 0x07030500)
jpayne@68 1177 #undef PyUnicode_Contains
jpayne@68 1178 #define PyUnicode_Contains(u, s) PySequence_Contains(u, s)
jpayne@68 1179 #endif
jpayne@68 1180 #if !defined(PyByteArray_Check)
jpayne@68 1181 #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type)
jpayne@68 1182 #endif
jpayne@68 1183 #if !defined(PyObject_Format)
jpayne@68 1184 #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt)
jpayne@68 1185 #endif
jpayne@68 1186 #endif
jpayne@68 1187 #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b))
jpayne@68 1188 #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b))
jpayne@68 1189 #if PY_MAJOR_VERSION >= 3
jpayne@68 1190 #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b)
jpayne@68 1191 #else
jpayne@68 1192 #define __Pyx_PyString_Format(a, b) PyString_Format(a, b)
jpayne@68 1193 #endif
jpayne@68 1194 #if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII)
jpayne@68 1195 #define PyObject_ASCII(o) PyObject_Repr(o)
jpayne@68 1196 #endif
jpayne@68 1197 #if PY_MAJOR_VERSION >= 3
jpayne@68 1198 #define PyBaseString_Type PyUnicode_Type
jpayne@68 1199 #define PyStringObject PyUnicodeObject
jpayne@68 1200 #define PyString_Type PyUnicode_Type
jpayne@68 1201 #define PyString_Check PyUnicode_Check
jpayne@68 1202 #define PyString_CheckExact PyUnicode_CheckExact
jpayne@68 1203 #ifndef PyObject_Unicode
jpayne@68 1204 #define PyObject_Unicode PyObject_Str
jpayne@68 1205 #endif
jpayne@68 1206 #endif
jpayne@68 1207 #if PY_MAJOR_VERSION >= 3
jpayne@68 1208 #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
jpayne@68 1209 #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj)
jpayne@68 1210 #else
jpayne@68 1211 #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj))
jpayne@68 1212 #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj))
jpayne@68 1213 #endif
jpayne@68 1214 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 1215 #define __Pyx_PySequence_ListKeepNew(obj)\
jpayne@68 1216 (likely(PyList_CheckExact(obj) && Py_REFCNT(obj) == 1) ? __Pyx_NewRef(obj) : PySequence_List(obj))
jpayne@68 1217 #else
jpayne@68 1218 #define __Pyx_PySequence_ListKeepNew(obj) PySequence_List(obj)
jpayne@68 1219 #endif
jpayne@68 1220 #ifndef PySet_CheckExact
jpayne@68 1221 #define PySet_CheckExact(obj) __Pyx_IS_TYPE(obj, &PySet_Type)
jpayne@68 1222 #endif
jpayne@68 1223 #if PY_VERSION_HEX >= 0x030900A4
jpayne@68 1224 #define __Pyx_SET_REFCNT(obj, refcnt) Py_SET_REFCNT(obj, refcnt)
jpayne@68 1225 #define __Pyx_SET_SIZE(obj, size) Py_SET_SIZE(obj, size)
jpayne@68 1226 #else
jpayne@68 1227 #define __Pyx_SET_REFCNT(obj, refcnt) Py_REFCNT(obj) = (refcnt)
jpayne@68 1228 #define __Pyx_SET_SIZE(obj, size) Py_SIZE(obj) = (size)
jpayne@68 1229 #endif
jpayne@68 1230 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 1231 #define __Pyx_PySequence_ITEM(o, i) PySequence_ITEM(o, i)
jpayne@68 1232 #define __Pyx_PySequence_SIZE(seq) Py_SIZE(seq)
jpayne@68 1233 #define __Pyx_PyTuple_SET_ITEM(o, i, v) (PyTuple_SET_ITEM(o, i, v), (0))
jpayne@68 1234 #define __Pyx_PyList_SET_ITEM(o, i, v) (PyList_SET_ITEM(o, i, v), (0))
jpayne@68 1235 #define __Pyx_PyTuple_GET_SIZE(o) PyTuple_GET_SIZE(o)
jpayne@68 1236 #define __Pyx_PyList_GET_SIZE(o) PyList_GET_SIZE(o)
jpayne@68 1237 #define __Pyx_PySet_GET_SIZE(o) PySet_GET_SIZE(o)
jpayne@68 1238 #define __Pyx_PyBytes_GET_SIZE(o) PyBytes_GET_SIZE(o)
jpayne@68 1239 #define __Pyx_PyByteArray_GET_SIZE(o) PyByteArray_GET_SIZE(o)
jpayne@68 1240 #else
jpayne@68 1241 #define __Pyx_PySequence_ITEM(o, i) PySequence_GetItem(o, i)
jpayne@68 1242 #define __Pyx_PySequence_SIZE(seq) PySequence_Size(seq)
jpayne@68 1243 #define __Pyx_PyTuple_SET_ITEM(o, i, v) PyTuple_SetItem(o, i, v)
jpayne@68 1244 #define __Pyx_PyList_SET_ITEM(o, i, v) PyList_SetItem(o, i, v)
jpayne@68 1245 #define __Pyx_PyTuple_GET_SIZE(o) PyTuple_Size(o)
jpayne@68 1246 #define __Pyx_PyList_GET_SIZE(o) PyList_Size(o)
jpayne@68 1247 #define __Pyx_PySet_GET_SIZE(o) PySet_Size(o)
jpayne@68 1248 #define __Pyx_PyBytes_GET_SIZE(o) PyBytes_Size(o)
jpayne@68 1249 #define __Pyx_PyByteArray_GET_SIZE(o) PyByteArray_Size(o)
jpayne@68 1250 #endif
jpayne@68 1251 #if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1
jpayne@68 1252 #define __Pyx_PyImport_AddModuleRef(name) PyImport_AddModuleRef(name)
jpayne@68 1253 #else
jpayne@68 1254 static CYTHON_INLINE PyObject *__Pyx_PyImport_AddModuleRef(const char *name) {
jpayne@68 1255 PyObject *module = PyImport_AddModule(name);
jpayne@68 1256 Py_XINCREF(module);
jpayne@68 1257 return module;
jpayne@68 1258 }
jpayne@68 1259 #endif
jpayne@68 1260 #if PY_MAJOR_VERSION >= 3
jpayne@68 1261 #define PyIntObject PyLongObject
jpayne@68 1262 #define PyInt_Type PyLong_Type
jpayne@68 1263 #define PyInt_Check(op) PyLong_Check(op)
jpayne@68 1264 #define PyInt_CheckExact(op) PyLong_CheckExact(op)
jpayne@68 1265 #define __Pyx_Py3Int_Check(op) PyLong_Check(op)
jpayne@68 1266 #define __Pyx_Py3Int_CheckExact(op) PyLong_CheckExact(op)
jpayne@68 1267 #define PyInt_FromString PyLong_FromString
jpayne@68 1268 #define PyInt_FromUnicode PyLong_FromUnicode
jpayne@68 1269 #define PyInt_FromLong PyLong_FromLong
jpayne@68 1270 #define PyInt_FromSize_t PyLong_FromSize_t
jpayne@68 1271 #define PyInt_FromSsize_t PyLong_FromSsize_t
jpayne@68 1272 #define PyInt_AsLong PyLong_AsLong
jpayne@68 1273 #define PyInt_AS_LONG PyLong_AS_LONG
jpayne@68 1274 #define PyInt_AsSsize_t PyLong_AsSsize_t
jpayne@68 1275 #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask
jpayne@68 1276 #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
jpayne@68 1277 #define PyNumber_Int PyNumber_Long
jpayne@68 1278 #else
jpayne@68 1279 #define __Pyx_Py3Int_Check(op) (PyLong_Check(op) || PyInt_Check(op))
jpayne@68 1280 #define __Pyx_Py3Int_CheckExact(op) (PyLong_CheckExact(op) || PyInt_CheckExact(op))
jpayne@68 1281 #endif
jpayne@68 1282 #if PY_MAJOR_VERSION >= 3
jpayne@68 1283 #define PyBoolObject PyLongObject
jpayne@68 1284 #endif
jpayne@68 1285 #if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY
jpayne@68 1286 #ifndef PyUnicode_InternFromString
jpayne@68 1287 #define PyUnicode_InternFromString(s) PyUnicode_FromString(s)
jpayne@68 1288 #endif
jpayne@68 1289 #endif
jpayne@68 1290 #if PY_VERSION_HEX < 0x030200A4
jpayne@68 1291 typedef long Py_hash_t;
jpayne@68 1292 #define __Pyx_PyInt_FromHash_t PyInt_FromLong
jpayne@68 1293 #define __Pyx_PyInt_AsHash_t __Pyx_PyIndex_AsHash_t
jpayne@68 1294 #else
jpayne@68 1295 #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
jpayne@68 1296 #define __Pyx_PyInt_AsHash_t __Pyx_PyIndex_AsSsize_t
jpayne@68 1297 #endif
jpayne@68 1298 #if CYTHON_USE_ASYNC_SLOTS
jpayne@68 1299 #if PY_VERSION_HEX >= 0x030500B1
jpayne@68 1300 #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods
jpayne@68 1301 #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async)
jpayne@68 1302 #else
jpayne@68 1303 #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved))
jpayne@68 1304 #endif
jpayne@68 1305 #else
jpayne@68 1306 #define __Pyx_PyType_AsAsync(obj) NULL
jpayne@68 1307 #endif
jpayne@68 1308 #ifndef __Pyx_PyAsyncMethodsStruct
jpayne@68 1309 typedef struct {
jpayne@68 1310 unaryfunc am_await;
jpayne@68 1311 unaryfunc am_aiter;
jpayne@68 1312 unaryfunc am_anext;
jpayne@68 1313 } __Pyx_PyAsyncMethodsStruct;
jpayne@68 1314 #endif
jpayne@68 1315
jpayne@68 1316 #if defined(_WIN32) || defined(WIN32) || defined(MS_WINDOWS)
jpayne@68 1317 #if !defined(_USE_MATH_DEFINES)
jpayne@68 1318 #define _USE_MATH_DEFINES
jpayne@68 1319 #endif
jpayne@68 1320 #endif
jpayne@68 1321 #include <math.h>
jpayne@68 1322 #ifdef NAN
jpayne@68 1323 #define __PYX_NAN() ((float) NAN)
jpayne@68 1324 #else
jpayne@68 1325 static CYTHON_INLINE float __PYX_NAN() {
jpayne@68 1326 float value;
jpayne@68 1327 memset(&value, 0xFF, sizeof(value));
jpayne@68 1328 return value;
jpayne@68 1329 }
jpayne@68 1330 #endif
jpayne@68 1331 #if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL)
jpayne@68 1332 #define __Pyx_truncl trunc
jpayne@68 1333 #else
jpayne@68 1334 #define __Pyx_truncl truncl
jpayne@68 1335 #endif
jpayne@68 1336
jpayne@68 1337 #define __PYX_MARK_ERR_POS(f_index, lineno) \
jpayne@68 1338 { __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__; (void)__pyx_clineno; }
jpayne@68 1339 #define __PYX_ERR(f_index, lineno, Ln_error) \
jpayne@68 1340 { __PYX_MARK_ERR_POS(f_index, lineno) goto Ln_error; }
jpayne@68 1341
jpayne@68 1342 #ifdef CYTHON_EXTERN_C
jpayne@68 1343 #undef __PYX_EXTERN_C
jpayne@68 1344 #define __PYX_EXTERN_C CYTHON_EXTERN_C
jpayne@68 1345 #elif defined(__PYX_EXTERN_C)
jpayne@68 1346 #ifdef _MSC_VER
jpayne@68 1347 #pragma message ("Please do not define the '__PYX_EXTERN_C' macro externally. Use 'CYTHON_EXTERN_C' instead.")
jpayne@68 1348 #else
jpayne@68 1349 #warning Please do not define the '__PYX_EXTERN_C' macro externally. Use 'CYTHON_EXTERN_C' instead.
jpayne@68 1350 #endif
jpayne@68 1351 #else
jpayne@68 1352 #ifdef __cplusplus
jpayne@68 1353 #define __PYX_EXTERN_C extern "C"
jpayne@68 1354 #else
jpayne@68 1355 #define __PYX_EXTERN_C extern
jpayne@68 1356 #endif
jpayne@68 1357 #endif
jpayne@68 1358
jpayne@68 1359 #define __PYX_HAVE__pysam__libchtslib
jpayne@68 1360 #define __PYX_HAVE_API__pysam__libchtslib
jpayne@68 1361 /* Early includes */
jpayne@68 1362 #include <stdint.h>
jpayne@68 1363 #include <string.h>
jpayne@68 1364 #include <stdlib.h>
jpayne@68 1365 #include <stdio.h>
jpayne@68 1366 #include <sys/types.h>
jpayne@68 1367 #include "stdarg.h"
jpayne@68 1368 #include "htslib/kstring.h"
jpayne@68 1369 #include "htslib_util.h"
jpayne@68 1370 #include "htslib/hfile.h"
jpayne@68 1371 #include "htslib/bgzf.h"
jpayne@68 1372 #include "htslib/hts.h"
jpayne@68 1373 #include "htslib/sam.h"
jpayne@68 1374 #include "htslib/faidx.h"
jpayne@68 1375 #include "htslib/tbx.h"
jpayne@68 1376 #include "htslib/vcf.h"
jpayne@68 1377 #include "htslib/vcfutils.h"
jpayne@68 1378 #include "htslib/cram.h"
jpayne@68 1379 #include <unistd.h>
jpayne@68 1380 #include <errno.h>
jpayne@68 1381 #include <stddef.h>
jpayne@68 1382 #include "pythread.h"
jpayne@68 1383
jpayne@68 1384 #if CYTHON_COMPILING_IN_PYPY
jpayne@68 1385 #ifdef _MSC_VER
jpayne@68 1386 #pragma message ("This module uses CPython specific internals of 'array.array', which are not available in PyPy.")
jpayne@68 1387 #else
jpayne@68 1388 #warning This module uses CPython specific internals of 'array.array', which are not available in PyPy.
jpayne@68 1389 #endif
jpayne@68 1390 #endif
jpayne@68 1391
jpayne@68 1392 #ifdef _OPENMP
jpayne@68 1393 #include <omp.h>
jpayne@68 1394 #endif /* _OPENMP */
jpayne@68 1395
jpayne@68 1396 #if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS)
jpayne@68 1397 #define CYTHON_WITHOUT_ASSERTIONS
jpayne@68 1398 #endif
jpayne@68 1399
jpayne@68 1400 typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding;
jpayne@68 1401 const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;
jpayne@68 1402
jpayne@68 1403 #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
jpayne@68 1404 #define __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 0
jpayne@68 1405 #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT (PY_MAJOR_VERSION >= 3 && __PYX_DEFAULT_STRING_ENCODING_IS_UTF8)
jpayne@68 1406 #define __PYX_DEFAULT_STRING_ENCODING ""
jpayne@68 1407 #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString
jpayne@68 1408 #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
jpayne@68 1409 #define __Pyx_uchar_cast(c) ((unsigned char)c)
jpayne@68 1410 #define __Pyx_long_cast(x) ((long)x)
jpayne@68 1411 #define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\
jpayne@68 1412 (sizeof(type) < sizeof(Py_ssize_t)) ||\
jpayne@68 1413 (sizeof(type) > sizeof(Py_ssize_t) &&\
jpayne@68 1414 likely(v < (type)PY_SSIZE_T_MAX ||\
jpayne@68 1415 v == (type)PY_SSIZE_T_MAX) &&\
jpayne@68 1416 (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
jpayne@68 1417 v == (type)PY_SSIZE_T_MIN))) ||\
jpayne@68 1418 (sizeof(type) == sizeof(Py_ssize_t) &&\
jpayne@68 1419 (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
jpayne@68 1420 v == (type)PY_SSIZE_T_MAX))) )
jpayne@68 1421 static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) {
jpayne@68 1422 return (size_t) i < (size_t) limit;
jpayne@68 1423 }
jpayne@68 1424 #if defined (__cplusplus) && __cplusplus >= 201103L
jpayne@68 1425 #include <cstdlib>
jpayne@68 1426 #define __Pyx_sst_abs(value) std::abs(value)
jpayne@68 1427 #elif SIZEOF_INT >= SIZEOF_SIZE_T
jpayne@68 1428 #define __Pyx_sst_abs(value) abs(value)
jpayne@68 1429 #elif SIZEOF_LONG >= SIZEOF_SIZE_T
jpayne@68 1430 #define __Pyx_sst_abs(value) labs(value)
jpayne@68 1431 #elif defined (_MSC_VER)
jpayne@68 1432 #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value))
jpayne@68 1433 #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
jpayne@68 1434 #define __Pyx_sst_abs(value) llabs(value)
jpayne@68 1435 #elif defined (__GNUC__)
jpayne@68 1436 #define __Pyx_sst_abs(value) __builtin_llabs(value)
jpayne@68 1437 #else
jpayne@68 1438 #define __Pyx_sst_abs(value) ((value<0) ? -value : value)
jpayne@68 1439 #endif
jpayne@68 1440 static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s);
jpayne@68 1441 static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*);
jpayne@68 1442 static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
jpayne@68 1443 static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char*);
jpayne@68 1444 #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
jpayne@68 1445 #define __Pyx_PyBytes_FromString PyBytes_FromString
jpayne@68 1446 #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
jpayne@68 1447 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
jpayne@68 1448 #if PY_MAJOR_VERSION < 3
jpayne@68 1449 #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString
jpayne@68 1450 #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
jpayne@68 1451 #else
jpayne@68 1452 #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString
jpayne@68 1453 #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
jpayne@68 1454 #endif
jpayne@68 1455 #define __Pyx_PyBytes_AsWritableString(s) ((char*) PyBytes_AS_STRING(s))
jpayne@68 1456 #define __Pyx_PyBytes_AsWritableSString(s) ((signed char*) PyBytes_AS_STRING(s))
jpayne@68 1457 #define __Pyx_PyBytes_AsWritableUString(s) ((unsigned char*) PyBytes_AS_STRING(s))
jpayne@68 1458 #define __Pyx_PyBytes_AsString(s) ((const char*) PyBytes_AS_STRING(s))
jpayne@68 1459 #define __Pyx_PyBytes_AsSString(s) ((const signed char*) PyBytes_AS_STRING(s))
jpayne@68 1460 #define __Pyx_PyBytes_AsUString(s) ((const unsigned char*) PyBytes_AS_STRING(s))
jpayne@68 1461 #define __Pyx_PyObject_AsWritableString(s) ((char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s))
jpayne@68 1462 #define __Pyx_PyObject_AsWritableSString(s) ((signed char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s))
jpayne@68 1463 #define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s))
jpayne@68 1464 #define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s))
jpayne@68 1465 #define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s))
jpayne@68 1466 #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s)
jpayne@68 1467 #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s)
jpayne@68 1468 #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s)
jpayne@68 1469 #define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s)
jpayne@68 1470 #define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
jpayne@68 1471 #define __Pyx_PyUnicode_FromOrdinal(o) PyUnicode_FromOrdinal((int)o)
jpayne@68 1472 #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode
jpayne@68 1473 #define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
jpayne@68 1474 #define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
jpayne@68 1475 static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b);
jpayne@68 1476 static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
jpayne@68 1477 static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*);
jpayne@68 1478 static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x);
jpayne@68 1479 #define __Pyx_PySequence_Tuple(obj)\
jpayne@68 1480 (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj))
jpayne@68 1481 static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
jpayne@68 1482 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
jpayne@68 1483 static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject*);
jpayne@68 1484 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 1485 #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
jpayne@68 1486 #else
jpayne@68 1487 #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
jpayne@68 1488 #endif
jpayne@68 1489 #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
jpayne@68 1490 #if PY_MAJOR_VERSION >= 3
jpayne@68 1491 #define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x))
jpayne@68 1492 #else
jpayne@68 1493 #define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x))
jpayne@68 1494 #endif
jpayne@68 1495 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 1496 #if PY_VERSION_HEX >= 0x030C00A7
jpayne@68 1497 #ifndef _PyLong_SIGN_MASK
jpayne@68 1498 #define _PyLong_SIGN_MASK 3
jpayne@68 1499 #endif
jpayne@68 1500 #ifndef _PyLong_NON_SIZE_BITS
jpayne@68 1501 #define _PyLong_NON_SIZE_BITS 3
jpayne@68 1502 #endif
jpayne@68 1503 #define __Pyx_PyLong_Sign(x) (((PyLongObject*)x)->long_value.lv_tag & _PyLong_SIGN_MASK)
jpayne@68 1504 #define __Pyx_PyLong_IsNeg(x) ((__Pyx_PyLong_Sign(x) & 2) != 0)
jpayne@68 1505 #define __Pyx_PyLong_IsNonNeg(x) (!__Pyx_PyLong_IsNeg(x))
jpayne@68 1506 #define __Pyx_PyLong_IsZero(x) (__Pyx_PyLong_Sign(x) & 1)
jpayne@68 1507 #define __Pyx_PyLong_IsPos(x) (__Pyx_PyLong_Sign(x) == 0)
jpayne@68 1508 #define __Pyx_PyLong_CompactValueUnsigned(x) (__Pyx_PyLong_Digits(x)[0])
jpayne@68 1509 #define __Pyx_PyLong_DigitCount(x) ((Py_ssize_t) (((PyLongObject*)x)->long_value.lv_tag >> _PyLong_NON_SIZE_BITS))
jpayne@68 1510 #define __Pyx_PyLong_SignedDigitCount(x)\
jpayne@68 1511 ((1 - (Py_ssize_t) __Pyx_PyLong_Sign(x)) * __Pyx_PyLong_DigitCount(x))
jpayne@68 1512 #if defined(PyUnstable_Long_IsCompact) && defined(PyUnstable_Long_CompactValue)
jpayne@68 1513 #define __Pyx_PyLong_IsCompact(x) PyUnstable_Long_IsCompact((PyLongObject*) x)
jpayne@68 1514 #define __Pyx_PyLong_CompactValue(x) PyUnstable_Long_CompactValue((PyLongObject*) x)
jpayne@68 1515 #else
jpayne@68 1516 #define __Pyx_PyLong_IsCompact(x) (((PyLongObject*)x)->long_value.lv_tag < (2 << _PyLong_NON_SIZE_BITS))
jpayne@68 1517 #define __Pyx_PyLong_CompactValue(x) ((1 - (Py_ssize_t) __Pyx_PyLong_Sign(x)) * (Py_ssize_t) __Pyx_PyLong_Digits(x)[0])
jpayne@68 1518 #endif
jpayne@68 1519 typedef Py_ssize_t __Pyx_compact_pylong;
jpayne@68 1520 typedef size_t __Pyx_compact_upylong;
jpayne@68 1521 #else
jpayne@68 1522 #define __Pyx_PyLong_IsNeg(x) (Py_SIZE(x) < 0)
jpayne@68 1523 #define __Pyx_PyLong_IsNonNeg(x) (Py_SIZE(x) >= 0)
jpayne@68 1524 #define __Pyx_PyLong_IsZero(x) (Py_SIZE(x) == 0)
jpayne@68 1525 #define __Pyx_PyLong_IsPos(x) (Py_SIZE(x) > 0)
jpayne@68 1526 #define __Pyx_PyLong_CompactValueUnsigned(x) ((Py_SIZE(x) == 0) ? 0 : __Pyx_PyLong_Digits(x)[0])
jpayne@68 1527 #define __Pyx_PyLong_DigitCount(x) __Pyx_sst_abs(Py_SIZE(x))
jpayne@68 1528 #define __Pyx_PyLong_SignedDigitCount(x) Py_SIZE(x)
jpayne@68 1529 #define __Pyx_PyLong_IsCompact(x) (Py_SIZE(x) == 0 || Py_SIZE(x) == 1 || Py_SIZE(x) == -1)
jpayne@68 1530 #define __Pyx_PyLong_CompactValue(x)\
jpayne@68 1531 ((Py_SIZE(x) == 0) ? (sdigit) 0 : ((Py_SIZE(x) < 0) ? -(sdigit)__Pyx_PyLong_Digits(x)[0] : (sdigit)__Pyx_PyLong_Digits(x)[0]))
jpayne@68 1532 typedef sdigit __Pyx_compact_pylong;
jpayne@68 1533 typedef digit __Pyx_compact_upylong;
jpayne@68 1534 #endif
jpayne@68 1535 #if PY_VERSION_HEX >= 0x030C00A5
jpayne@68 1536 #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->long_value.ob_digit)
jpayne@68 1537 #else
jpayne@68 1538 #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->ob_digit)
jpayne@68 1539 #endif
jpayne@68 1540 #endif
jpayne@68 1541 #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
jpayne@68 1542 #include <string.h>
jpayne@68 1543 static int __Pyx_sys_getdefaultencoding_not_ascii;
jpayne@68 1544 static int __Pyx_init_sys_getdefaultencoding_params(void) {
jpayne@68 1545 PyObject* sys;
jpayne@68 1546 PyObject* default_encoding = NULL;
jpayne@68 1547 PyObject* ascii_chars_u = NULL;
jpayne@68 1548 PyObject* ascii_chars_b = NULL;
jpayne@68 1549 const char* default_encoding_c;
jpayne@68 1550 sys = PyImport_ImportModule("sys");
jpayne@68 1551 if (!sys) goto bad;
jpayne@68 1552 default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
jpayne@68 1553 Py_DECREF(sys);
jpayne@68 1554 if (!default_encoding) goto bad;
jpayne@68 1555 default_encoding_c = PyBytes_AsString(default_encoding);
jpayne@68 1556 if (!default_encoding_c) goto bad;
jpayne@68 1557 if (strcmp(default_encoding_c, "ascii") == 0) {
jpayne@68 1558 __Pyx_sys_getdefaultencoding_not_ascii = 0;
jpayne@68 1559 } else {
jpayne@68 1560 char ascii_chars[128];
jpayne@68 1561 int c;
jpayne@68 1562 for (c = 0; c < 128; c++) {
jpayne@68 1563 ascii_chars[c] = (char) c;
jpayne@68 1564 }
jpayne@68 1565 __Pyx_sys_getdefaultencoding_not_ascii = 1;
jpayne@68 1566 ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL);
jpayne@68 1567 if (!ascii_chars_u) goto bad;
jpayne@68 1568 ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL);
jpayne@68 1569 if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) {
jpayne@68 1570 PyErr_Format(
jpayne@68 1571 PyExc_ValueError,
jpayne@68 1572 "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.",
jpayne@68 1573 default_encoding_c);
jpayne@68 1574 goto bad;
jpayne@68 1575 }
jpayne@68 1576 Py_DECREF(ascii_chars_u);
jpayne@68 1577 Py_DECREF(ascii_chars_b);
jpayne@68 1578 }
jpayne@68 1579 Py_DECREF(default_encoding);
jpayne@68 1580 return 0;
jpayne@68 1581 bad:
jpayne@68 1582 Py_XDECREF(default_encoding);
jpayne@68 1583 Py_XDECREF(ascii_chars_u);
jpayne@68 1584 Py_XDECREF(ascii_chars_b);
jpayne@68 1585 return -1;
jpayne@68 1586 }
jpayne@68 1587 #endif
jpayne@68 1588 #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
jpayne@68 1589 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
jpayne@68 1590 #else
jpayne@68 1591 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
jpayne@68 1592 #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
jpayne@68 1593 #include <string.h>
jpayne@68 1594 static char* __PYX_DEFAULT_STRING_ENCODING;
jpayne@68 1595 static int __Pyx_init_sys_getdefaultencoding_params(void) {
jpayne@68 1596 PyObject* sys;
jpayne@68 1597 PyObject* default_encoding = NULL;
jpayne@68 1598 char* default_encoding_c;
jpayne@68 1599 sys = PyImport_ImportModule("sys");
jpayne@68 1600 if (!sys) goto bad;
jpayne@68 1601 default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
jpayne@68 1602 Py_DECREF(sys);
jpayne@68 1603 if (!default_encoding) goto bad;
jpayne@68 1604 default_encoding_c = PyBytes_AsString(default_encoding);
jpayne@68 1605 if (!default_encoding_c) goto bad;
jpayne@68 1606 __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1);
jpayne@68 1607 if (!__PYX_DEFAULT_STRING_ENCODING) goto bad;
jpayne@68 1608 strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c);
jpayne@68 1609 Py_DECREF(default_encoding);
jpayne@68 1610 return 0;
jpayne@68 1611 bad:
jpayne@68 1612 Py_XDECREF(default_encoding);
jpayne@68 1613 return -1;
jpayne@68 1614 }
jpayne@68 1615 #endif
jpayne@68 1616 #endif
jpayne@68 1617
jpayne@68 1618
jpayne@68 1619 /* Test for GCC > 2.95 */
jpayne@68 1620 #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))
jpayne@68 1621 #define likely(x) __builtin_expect(!!(x), 1)
jpayne@68 1622 #define unlikely(x) __builtin_expect(!!(x), 0)
jpayne@68 1623 #else /* !__GNUC__ or GCC < 2.95 */
jpayne@68 1624 #define likely(x) (x)
jpayne@68 1625 #define unlikely(x) (x)
jpayne@68 1626 #endif /* __GNUC__ */
jpayne@68 1627 static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; }
jpayne@68 1628
jpayne@68 1629 #if !CYTHON_USE_MODULE_STATE
jpayne@68 1630 static PyObject *__pyx_m = NULL;
jpayne@68 1631 #endif
jpayne@68 1632 static int __pyx_lineno;
jpayne@68 1633 static int __pyx_clineno = 0;
jpayne@68 1634 static const char * __pyx_cfilenm = __FILE__;
jpayne@68 1635 static const char *__pyx_filename;
jpayne@68 1636
jpayne@68 1637 /* #### Code section: filename_table ### */
jpayne@68 1638
jpayne@68 1639 static const char *__pyx_f[] = {
jpayne@68 1640 "pysam/libchtslib.pyx",
jpayne@68 1641 "<stringsource>",
jpayne@68 1642 "contextvars.pxd",
jpayne@68 1643 "array.pxd",
jpayne@68 1644 "pysam/libchtslib.pxd",
jpayne@68 1645 "type.pxd",
jpayne@68 1646 "bool.pxd",
jpayne@68 1647 "complex.pxd",
jpayne@68 1648 };
jpayne@68 1649 /* #### Code section: utility_code_proto_before_types ### */
jpayne@68 1650 /* ForceInitThreads.proto */
jpayne@68 1651 #ifndef __PYX_FORCE_INIT_THREADS
jpayne@68 1652 #define __PYX_FORCE_INIT_THREADS 0
jpayne@68 1653 #endif
jpayne@68 1654
jpayne@68 1655 /* NoFastGil.proto */
jpayne@68 1656 #define __Pyx_PyGILState_Ensure PyGILState_Ensure
jpayne@68 1657 #define __Pyx_PyGILState_Release PyGILState_Release
jpayne@68 1658 #define __Pyx_FastGIL_Remember()
jpayne@68 1659 #define __Pyx_FastGIL_Forget()
jpayne@68 1660 #define __Pyx_FastGilFuncInit()
jpayne@68 1661
jpayne@68 1662 /* #### Code section: numeric_typedefs ### */
jpayne@68 1663 /* #### Code section: complex_type_declarations ### */
jpayne@68 1664 /* #### Code section: type_declarations ### */
jpayne@68 1665
jpayne@68 1666 /*--- Type declarations ---*/
jpayne@68 1667 #ifndef _ARRAYARRAY_H
jpayne@68 1668 struct arrayobject;
jpayne@68 1669 typedef struct arrayobject arrayobject;
jpayne@68 1670 #endif
jpayne@68 1671 struct __pyx_obj_5pysam_10libchtslib_HTSFile;
jpayne@68 1672 struct __pyx_obj_5pysam_10libchtslib_HFile;
jpayne@68 1673 struct __pyx_opt_args_7cpython_11contextvars_get_value;
jpayne@68 1674 struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default;
jpayne@68 1675
jpayne@68 1676 /* "cpython/contextvars.pxd":112
jpayne@68 1677 *
jpayne@68 1678 *
jpayne@68 1679 * cdef inline object get_value(var, default_value=None): # <<<<<<<<<<<<<<
jpayne@68 1680 * """Return a new reference to the value of the context variable,
jpayne@68 1681 * or the default value of the context variable,
jpayne@68 1682 */
jpayne@68 1683 struct __pyx_opt_args_7cpython_11contextvars_get_value {
jpayne@68 1684 int __pyx_n;
jpayne@68 1685 PyObject *default_value;
jpayne@68 1686 };
jpayne@68 1687
jpayne@68 1688 /* "cpython/contextvars.pxd":129
jpayne@68 1689 *
jpayne@68 1690 *
jpayne@68 1691 * cdef inline object get_value_no_default(var, default_value=None): # <<<<<<<<<<<<<<
jpayne@68 1692 * """Return a new reference to the value of the context variable,
jpayne@68 1693 * or the provided default value if no such value was found.
jpayne@68 1694 */
jpayne@68 1695 struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default {
jpayne@68 1696 int __pyx_n;
jpayne@68 1697 PyObject *default_value;
jpayne@68 1698 };
jpayne@68 1699 struct __pyx_opt_args_5pysam_9libcutils_parse_region;
jpayne@68 1700 struct __pyx_opt_args_5pysam_9libcutils_qualitystring_to_array;
jpayne@68 1701 struct __pyx_opt_args_5pysam_9libcutils_array_to_qualitystring;
jpayne@68 1702 struct __pyx_opt_args_5pysam_9libcutils_qualities_to_qualitystring;
jpayne@68 1703 struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str;
jpayne@68 1704 struct __pyx_opt_args_5pysam_9libcutils_charptr_to_bytes;
jpayne@68 1705 struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str_w_len;
jpayne@68 1706 struct __pyx_opt_args_5pysam_9libcutils_force_str;
jpayne@68 1707 struct __pyx_opt_args_5pysam_9libcutils_force_bytes;
jpayne@68 1708 struct __pyx_opt_args_5pysam_9libcutils_decode_bytes;
jpayne@68 1709
jpayne@68 1710 /* "pysam/libcutils.pxd":8
jpayne@68 1711 * from cpython cimport array as c_array
jpayne@68 1712 *
jpayne@68 1713 * cpdef parse_region(contig=*, start=*, stop=*, region=*, reference=*, end=*) # <<<<<<<<<<<<<<
jpayne@68 1714 *
jpayne@68 1715 * cdef int libc_whence_from_io(int whence)
jpayne@68 1716 */
jpayne@68 1717 struct __pyx_opt_args_5pysam_9libcutils_parse_region {
jpayne@68 1718 int __pyx_n;
jpayne@68 1719 PyObject *contig;
jpayne@68 1720 PyObject *start;
jpayne@68 1721 PyObject *stop;
jpayne@68 1722 PyObject *region;
jpayne@68 1723 PyObject *reference;
jpayne@68 1724 PyObject *end;
jpayne@68 1725 };
jpayne@68 1726
jpayne@68 1727 /* "pysam/libcutils.pxd":15
jpayne@68 1728 * # Utility functions for quality string conversions
jpayne@68 1729 *
jpayne@68 1730 * cpdef c_array.array qualitystring_to_array(input_str, int offset=*) # <<<<<<<<<<<<<<
jpayne@68 1731 * cpdef array_to_qualitystring(c_array.array arr, int offset=*)
jpayne@68 1732 * cpdef qualities_to_qualitystring(qualities, int offset=*)
jpayne@68 1733 */
jpayne@68 1734 struct __pyx_opt_args_5pysam_9libcutils_qualitystring_to_array {
jpayne@68 1735 int __pyx_n;
jpayne@68 1736 int offset;
jpayne@68 1737 };
jpayne@68 1738
jpayne@68 1739 /* "pysam/libcutils.pxd":16
jpayne@68 1740 *
jpayne@68 1741 * cpdef c_array.array qualitystring_to_array(input_str, int offset=*)
jpayne@68 1742 * cpdef array_to_qualitystring(c_array.array arr, int offset=*) # <<<<<<<<<<<<<<
jpayne@68 1743 * cpdef qualities_to_qualitystring(qualities, int offset=*)
jpayne@68 1744 *
jpayne@68 1745 */
jpayne@68 1746 struct __pyx_opt_args_5pysam_9libcutils_array_to_qualitystring {
jpayne@68 1747 int __pyx_n;
jpayne@68 1748 int offset;
jpayne@68 1749 };
jpayne@68 1750
jpayne@68 1751 /* "pysam/libcutils.pxd":17
jpayne@68 1752 * cpdef c_array.array qualitystring_to_array(input_str, int offset=*)
jpayne@68 1753 * cpdef array_to_qualitystring(c_array.array arr, int offset=*)
jpayne@68 1754 * cpdef qualities_to_qualitystring(qualities, int offset=*) # <<<<<<<<<<<<<<
jpayne@68 1755 *
jpayne@68 1756 * ########################################################################
jpayne@68 1757 */
jpayne@68 1758 struct __pyx_opt_args_5pysam_9libcutils_qualities_to_qualitystring {
jpayne@68 1759 int __pyx_n;
jpayne@68 1760 int offset;
jpayne@68 1761 };
jpayne@68 1762
jpayne@68 1763 /* "pysam/libcutils.pxd":29
jpayne@68 1764 * ## Python 3 compatibility functions
jpayne@68 1765 * ########################################################################
jpayne@68 1766 * cdef charptr_to_str(const char *s, encoding=*, errors=*) # <<<<<<<<<<<<<<
jpayne@68 1767 * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*)
jpayne@68 1768 * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*)
jpayne@68 1769 */
jpayne@68 1770 struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str {
jpayne@68 1771 int __pyx_n;
jpayne@68 1772 PyObject *encoding;
jpayne@68 1773 PyObject *errors;
jpayne@68 1774 };
jpayne@68 1775
jpayne@68 1776 /* "pysam/libcutils.pxd":30
jpayne@68 1777 * ########################################################################
jpayne@68 1778 * cdef charptr_to_str(const char *s, encoding=*, errors=*)
jpayne@68 1779 * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) # <<<<<<<<<<<<<<
jpayne@68 1780 * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*)
jpayne@68 1781 * cdef force_str(object s, encoding=*, errors=*)
jpayne@68 1782 */
jpayne@68 1783 struct __pyx_opt_args_5pysam_9libcutils_charptr_to_bytes {
jpayne@68 1784 int __pyx_n;
jpayne@68 1785 PyObject *encoding;
jpayne@68 1786 PyObject *errors;
jpayne@68 1787 };
jpayne@68 1788
jpayne@68 1789 /* "pysam/libcutils.pxd":31
jpayne@68 1790 * cdef charptr_to_str(const char *s, encoding=*, errors=*)
jpayne@68 1791 * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*)
jpayne@68 1792 * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) # <<<<<<<<<<<<<<
jpayne@68 1793 * cdef force_str(object s, encoding=*, errors=*)
jpayne@68 1794 * cdef bytes force_bytes(object s, encoding=*, errors=*)
jpayne@68 1795 */
jpayne@68 1796 struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str_w_len {
jpayne@68 1797 int __pyx_n;
jpayne@68 1798 PyObject *encoding;
jpayne@68 1799 PyObject *errors;
jpayne@68 1800 };
jpayne@68 1801
jpayne@68 1802 /* "pysam/libcutils.pxd":32
jpayne@68 1803 * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*)
jpayne@68 1804 * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*)
jpayne@68 1805 * cdef force_str(object s, encoding=*, errors=*) # <<<<<<<<<<<<<<
jpayne@68 1806 * cdef bytes force_bytes(object s, encoding=*, errors=*)
jpayne@68 1807 * cdef decode_bytes(bytes s, encoding=*, errors=*)
jpayne@68 1808 */
jpayne@68 1809 struct __pyx_opt_args_5pysam_9libcutils_force_str {
jpayne@68 1810 int __pyx_n;
jpayne@68 1811 PyObject *encoding;
jpayne@68 1812 PyObject *errors;
jpayne@68 1813 };
jpayne@68 1814
jpayne@68 1815 /* "pysam/libcutils.pxd":33
jpayne@68 1816 * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*)
jpayne@68 1817 * cdef force_str(object s, encoding=*, errors=*)
jpayne@68 1818 * cdef bytes force_bytes(object s, encoding=*, errors=*) # <<<<<<<<<<<<<<
jpayne@68 1819 * cdef decode_bytes(bytes s, encoding=*, errors=*)
jpayne@68 1820 * cdef bytes encode_filename(object filename)
jpayne@68 1821 */
jpayne@68 1822 struct __pyx_opt_args_5pysam_9libcutils_force_bytes {
jpayne@68 1823 int __pyx_n;
jpayne@68 1824 PyObject *encoding;
jpayne@68 1825 PyObject *errors;
jpayne@68 1826 };
jpayne@68 1827
jpayne@68 1828 /* "pysam/libcutils.pxd":34
jpayne@68 1829 * cdef force_str(object s, encoding=*, errors=*)
jpayne@68 1830 * cdef bytes force_bytes(object s, encoding=*, errors=*)
jpayne@68 1831 * cdef decode_bytes(bytes s, encoding=*, errors=*) # <<<<<<<<<<<<<<
jpayne@68 1832 * cdef bytes encode_filename(object filename)
jpayne@68 1833 * cdef from_string_and_size(const char *s, size_t length)
jpayne@68 1834 */
jpayne@68 1835 struct __pyx_opt_args_5pysam_9libcutils_decode_bytes {
jpayne@68 1836 int __pyx_n;
jpayne@68 1837 PyObject *encoding;
jpayne@68 1838 PyObject *errors;
jpayne@68 1839 };
jpayne@68 1840 struct __pyx_opt_args_5pysam_10libchtslib_5HFile__open;
jpayne@68 1841
jpayne@68 1842 /* "pysam/libchtslib.pyx":81
jpayne@68 1843 * return self.fp == NULL
jpayne@68 1844 *
jpayne@68 1845 * cdef _open(self, name, mode, closefd=True): # <<<<<<<<<<<<<<
jpayne@68 1846 * self.name = name
jpayne@68 1847 * self.mode = mode
jpayne@68 1848 */
jpayne@68 1849 struct __pyx_opt_args_5pysam_10libchtslib_5HFile__open {
jpayne@68 1850 int __pyx_n;
jpayne@68 1851 PyObject *closefd;
jpayne@68 1852 };
jpayne@68 1853
jpayne@68 1854 /* "pysam/libchtslib.pxd":2706
jpayne@68 1855 *
jpayne@68 1856 *
jpayne@68 1857 * cdef class HTSFile(object): # <<<<<<<<<<<<<<
jpayne@68 1858 * cdef htsFile *htsfile # pointer to htsFile structure
jpayne@68 1859 * cdef int64_t start_offset # BGZF offset of first record
jpayne@68 1860 */
jpayne@68 1861 struct __pyx_obj_5pysam_10libchtslib_HTSFile {
jpayne@68 1862 PyObject_HEAD
jpayne@68 1863 struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile *__pyx_vtab;
jpayne@68 1864 htsFile *htsfile;
jpayne@68 1865 int64_t start_offset;
jpayne@68 1866 PyObject *filename;
jpayne@68 1867 PyObject *mode;
jpayne@68 1868 PyObject *threads;
jpayne@68 1869 PyObject *index_filename;
jpayne@68 1870 int is_stream;
jpayne@68 1871 int is_remote;
jpayne@68 1872 int duplicate_filehandle;
jpayne@68 1873 };
jpayne@68 1874
jpayne@68 1875
jpayne@68 1876 /* "pysam/libchtslib.pyx":67
jpayne@68 1877 * ########################################################################
jpayne@68 1878 *
jpayne@68 1879 * cdef class HFile(object): # <<<<<<<<<<<<<<
jpayne@68 1880 * cdef hFILE *fp
jpayne@68 1881 * cdef readonly object name, mode
jpayne@68 1882 */
jpayne@68 1883 struct __pyx_obj_5pysam_10libchtslib_HFile {
jpayne@68 1884 PyObject_HEAD
jpayne@68 1885 struct __pyx_vtabstruct_5pysam_10libchtslib_HFile *__pyx_vtab;
jpayne@68 1886 hFILE *fp;
jpayne@68 1887 PyObject *name;
jpayne@68 1888 PyObject *mode;
jpayne@68 1889 };
jpayne@68 1890
jpayne@68 1891
jpayne@68 1892
jpayne@68 1893 /* "pysam/libchtslib.pyx":321
jpayne@68 1894 * ########################################################################
jpayne@68 1895 *
jpayne@68 1896 * cdef class HTSFile(object): # <<<<<<<<<<<<<<
jpayne@68 1897 * """
jpayne@68 1898 * Base class for HTS file types
jpayne@68 1899 */
jpayne@68 1900
jpayne@68 1901 struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile {
jpayne@68 1902 htsFile *(*_open_htsfile)(struct __pyx_obj_5pysam_10libchtslib_HTSFile *);
jpayne@68 1903 };
jpayne@68 1904 static struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile *__pyx_vtabptr_5pysam_10libchtslib_HTSFile;
jpayne@68 1905
jpayne@68 1906
jpayne@68 1907 /* "pysam/libchtslib.pyx":67
jpayne@68 1908 * ########################################################################
jpayne@68 1909 *
jpayne@68 1910 * cdef class HFile(object): # <<<<<<<<<<<<<<
jpayne@68 1911 * cdef hFILE *fp
jpayne@68 1912 * cdef readonly object name, mode
jpayne@68 1913 */
jpayne@68 1914
jpayne@68 1915 struct __pyx_vtabstruct_5pysam_10libchtslib_HFile {
jpayne@68 1916 PyObject *(*_open)(struct __pyx_obj_5pysam_10libchtslib_HFile *, PyObject *, PyObject *, struct __pyx_opt_args_5pysam_10libchtslib_5HFile__open *__pyx_optional_args);
jpayne@68 1917 };
jpayne@68 1918 static struct __pyx_vtabstruct_5pysam_10libchtslib_HFile *__pyx_vtabptr_5pysam_10libchtslib_HFile;
jpayne@68 1919 /* #### Code section: utility_code_proto ### */
jpayne@68 1920
jpayne@68 1921 /* --- Runtime support code (head) --- */
jpayne@68 1922 /* Refnanny.proto */
jpayne@68 1923 #ifndef CYTHON_REFNANNY
jpayne@68 1924 #define CYTHON_REFNANNY 0
jpayne@68 1925 #endif
jpayne@68 1926 #if CYTHON_REFNANNY
jpayne@68 1927 typedef struct {
jpayne@68 1928 void (*INCREF)(void*, PyObject*, Py_ssize_t);
jpayne@68 1929 void (*DECREF)(void*, PyObject*, Py_ssize_t);
jpayne@68 1930 void (*GOTREF)(void*, PyObject*, Py_ssize_t);
jpayne@68 1931 void (*GIVEREF)(void*, PyObject*, Py_ssize_t);
jpayne@68 1932 void* (*SetupContext)(const char*, Py_ssize_t, const char*);
jpayne@68 1933 void (*FinishContext)(void**);
jpayne@68 1934 } __Pyx_RefNannyAPIStruct;
jpayne@68 1935 static __Pyx_RefNannyAPIStruct *__Pyx_RefNanny = NULL;
jpayne@68 1936 static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname);
jpayne@68 1937 #define __Pyx_RefNannyDeclarations void *__pyx_refnanny = NULL;
jpayne@68 1938 #ifdef WITH_THREAD
jpayne@68 1939 #define __Pyx_RefNannySetupContext(name, acquire_gil)\
jpayne@68 1940 if (acquire_gil) {\
jpayne@68 1941 PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\
jpayne@68 1942 __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), (__LINE__), (__FILE__));\
jpayne@68 1943 PyGILState_Release(__pyx_gilstate_save);\
jpayne@68 1944 } else {\
jpayne@68 1945 __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), (__LINE__), (__FILE__));\
jpayne@68 1946 }
jpayne@68 1947 #define __Pyx_RefNannyFinishContextNogil() {\
jpayne@68 1948 PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\
jpayne@68 1949 __Pyx_RefNannyFinishContext();\
jpayne@68 1950 PyGILState_Release(__pyx_gilstate_save);\
jpayne@68 1951 }
jpayne@68 1952 #else
jpayne@68 1953 #define __Pyx_RefNannySetupContext(name, acquire_gil)\
jpayne@68 1954 __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), (__LINE__), (__FILE__))
jpayne@68 1955 #define __Pyx_RefNannyFinishContextNogil() __Pyx_RefNannyFinishContext()
jpayne@68 1956 #endif
jpayne@68 1957 #define __Pyx_RefNannyFinishContextNogil() {\
jpayne@68 1958 PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\
jpayne@68 1959 __Pyx_RefNannyFinishContext();\
jpayne@68 1960 PyGILState_Release(__pyx_gilstate_save);\
jpayne@68 1961 }
jpayne@68 1962 #define __Pyx_RefNannyFinishContext()\
jpayne@68 1963 __Pyx_RefNanny->FinishContext(&__pyx_refnanny)
jpayne@68 1964 #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), (__LINE__))
jpayne@68 1965 #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), (__LINE__))
jpayne@68 1966 #define __Pyx_GOTREF(r) __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), (__LINE__))
jpayne@68 1967 #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), (__LINE__))
jpayne@68 1968 #define __Pyx_XINCREF(r) do { if((r) == NULL); else {__Pyx_INCREF(r); }} while(0)
jpayne@68 1969 #define __Pyx_XDECREF(r) do { if((r) == NULL); else {__Pyx_DECREF(r); }} while(0)
jpayne@68 1970 #define __Pyx_XGOTREF(r) do { if((r) == NULL); else {__Pyx_GOTREF(r); }} while(0)
jpayne@68 1971 #define __Pyx_XGIVEREF(r) do { if((r) == NULL); else {__Pyx_GIVEREF(r);}} while(0)
jpayne@68 1972 #else
jpayne@68 1973 #define __Pyx_RefNannyDeclarations
jpayne@68 1974 #define __Pyx_RefNannySetupContext(name, acquire_gil)
jpayne@68 1975 #define __Pyx_RefNannyFinishContextNogil()
jpayne@68 1976 #define __Pyx_RefNannyFinishContext()
jpayne@68 1977 #define __Pyx_INCREF(r) Py_INCREF(r)
jpayne@68 1978 #define __Pyx_DECREF(r) Py_DECREF(r)
jpayne@68 1979 #define __Pyx_GOTREF(r)
jpayne@68 1980 #define __Pyx_GIVEREF(r)
jpayne@68 1981 #define __Pyx_XINCREF(r) Py_XINCREF(r)
jpayne@68 1982 #define __Pyx_XDECREF(r) Py_XDECREF(r)
jpayne@68 1983 #define __Pyx_XGOTREF(r)
jpayne@68 1984 #define __Pyx_XGIVEREF(r)
jpayne@68 1985 #endif
jpayne@68 1986 #define __Pyx_Py_XDECREF_SET(r, v) do {\
jpayne@68 1987 PyObject *tmp = (PyObject *) r;\
jpayne@68 1988 r = v; Py_XDECREF(tmp);\
jpayne@68 1989 } while (0)
jpayne@68 1990 #define __Pyx_XDECREF_SET(r, v) do {\
jpayne@68 1991 PyObject *tmp = (PyObject *) r;\
jpayne@68 1992 r = v; __Pyx_XDECREF(tmp);\
jpayne@68 1993 } while (0)
jpayne@68 1994 #define __Pyx_DECREF_SET(r, v) do {\
jpayne@68 1995 PyObject *tmp = (PyObject *) r;\
jpayne@68 1996 r = v; __Pyx_DECREF(tmp);\
jpayne@68 1997 } while (0)
jpayne@68 1998 #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0)
jpayne@68 1999 #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0)
jpayne@68 2000
jpayne@68 2001 /* PyErrExceptionMatches.proto */
jpayne@68 2002 #if CYTHON_FAST_THREAD_STATE
jpayne@68 2003 #define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err)
jpayne@68 2004 static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err);
jpayne@68 2005 #else
jpayne@68 2006 #define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err)
jpayne@68 2007 #endif
jpayne@68 2008
jpayne@68 2009 /* PyThreadStateGet.proto */
jpayne@68 2010 #if CYTHON_FAST_THREAD_STATE
jpayne@68 2011 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
jpayne@68 2012 #define __Pyx_PyThreadState_assign __pyx_tstate = __Pyx_PyThreadState_Current;
jpayne@68 2013 #if PY_VERSION_HEX >= 0x030C00A6
jpayne@68 2014 #define __Pyx_PyErr_Occurred() (__pyx_tstate->current_exception != NULL)
jpayne@68 2015 #define __Pyx_PyErr_CurrentExceptionType() (__pyx_tstate->current_exception ? (PyObject*) Py_TYPE(__pyx_tstate->current_exception) : (PyObject*) NULL)
jpayne@68 2016 #else
jpayne@68 2017 #define __Pyx_PyErr_Occurred() (__pyx_tstate->curexc_type != NULL)
jpayne@68 2018 #define __Pyx_PyErr_CurrentExceptionType() (__pyx_tstate->curexc_type)
jpayne@68 2019 #endif
jpayne@68 2020 #else
jpayne@68 2021 #define __Pyx_PyThreadState_declare
jpayne@68 2022 #define __Pyx_PyThreadState_assign
jpayne@68 2023 #define __Pyx_PyErr_Occurred() (PyErr_Occurred() != NULL)
jpayne@68 2024 #define __Pyx_PyErr_CurrentExceptionType() PyErr_Occurred()
jpayne@68 2025 #endif
jpayne@68 2026
jpayne@68 2027 /* PyErrFetchRestore.proto */
jpayne@68 2028 #if CYTHON_FAST_THREAD_STATE
jpayne@68 2029 #define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL)
jpayne@68 2030 #define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb)
jpayne@68 2031 #define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb)
jpayne@68 2032 #define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb)
jpayne@68 2033 #define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb)
jpayne@68 2034 static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
jpayne@68 2035 static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
jpayne@68 2036 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A6
jpayne@68 2037 #define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL))
jpayne@68 2038 #else
jpayne@68 2039 #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc)
jpayne@68 2040 #endif
jpayne@68 2041 #else
jpayne@68 2042 #define __Pyx_PyErr_Clear() PyErr_Clear()
jpayne@68 2043 #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc)
jpayne@68 2044 #define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb)
jpayne@68 2045 #define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb)
jpayne@68 2046 #define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb)
jpayne@68 2047 #define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb)
jpayne@68 2048 #define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb)
jpayne@68 2049 #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb)
jpayne@68 2050 #endif
jpayne@68 2051
jpayne@68 2052 /* PyObjectGetAttrStr.proto */
jpayne@68 2053 #if CYTHON_USE_TYPE_SLOTS
jpayne@68 2054 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name);
jpayne@68 2055 #else
jpayne@68 2056 #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n)
jpayne@68 2057 #endif
jpayne@68 2058
jpayne@68 2059 /* PyObjectGetAttrStrNoError.proto */
jpayne@68 2060 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name);
jpayne@68 2061
jpayne@68 2062 /* GetBuiltinName.proto */
jpayne@68 2063 static PyObject *__Pyx_GetBuiltinName(PyObject *name);
jpayne@68 2064
jpayne@68 2065 /* TupleAndListFromArray.proto */
jpayne@68 2066 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 2067 static CYTHON_INLINE PyObject* __Pyx_PyList_FromArray(PyObject *const *src, Py_ssize_t n);
jpayne@68 2068 static CYTHON_INLINE PyObject* __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n);
jpayne@68 2069 #endif
jpayne@68 2070
jpayne@68 2071 /* IncludeStringH.proto */
jpayne@68 2072 #include <string.h>
jpayne@68 2073
jpayne@68 2074 /* BytesEquals.proto */
jpayne@68 2075 static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals);
jpayne@68 2076
jpayne@68 2077 /* UnicodeEquals.proto */
jpayne@68 2078 static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals);
jpayne@68 2079
jpayne@68 2080 /* fastcall.proto */
jpayne@68 2081 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 2082 #define __Pyx_Arg_VARARGS(args, i) PySequence_GetItem(args, i)
jpayne@68 2083 #elif CYTHON_ASSUME_SAFE_MACROS
jpayne@68 2084 #define __Pyx_Arg_VARARGS(args, i) PyTuple_GET_ITEM(args, i)
jpayne@68 2085 #else
jpayne@68 2086 #define __Pyx_Arg_VARARGS(args, i) PyTuple_GetItem(args, i)
jpayne@68 2087 #endif
jpayne@68 2088 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 2089 #define __Pyx_Arg_NewRef_VARARGS(arg) __Pyx_NewRef(arg)
jpayne@68 2090 #define __Pyx_Arg_XDECREF_VARARGS(arg) Py_XDECREF(arg)
jpayne@68 2091 #else
jpayne@68 2092 #define __Pyx_Arg_NewRef_VARARGS(arg) arg
jpayne@68 2093 #define __Pyx_Arg_XDECREF_VARARGS(arg)
jpayne@68 2094 #endif
jpayne@68 2095 #define __Pyx_NumKwargs_VARARGS(kwds) PyDict_Size(kwds)
jpayne@68 2096 #define __Pyx_KwValues_VARARGS(args, nargs) NULL
jpayne@68 2097 #define __Pyx_GetKwValue_VARARGS(kw, kwvalues, s) __Pyx_PyDict_GetItemStrWithError(kw, s)
jpayne@68 2098 #define __Pyx_KwargsAsDict_VARARGS(kw, kwvalues) PyDict_Copy(kw)
jpayne@68 2099 #if CYTHON_METH_FASTCALL
jpayne@68 2100 #define __Pyx_Arg_FASTCALL(args, i) args[i]
jpayne@68 2101 #define __Pyx_NumKwargs_FASTCALL(kwds) PyTuple_GET_SIZE(kwds)
jpayne@68 2102 #define __Pyx_KwValues_FASTCALL(args, nargs) ((args) + (nargs))
jpayne@68 2103 static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s);
jpayne@68 2104 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000
jpayne@68 2105 CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues);
jpayne@68 2106 #else
jpayne@68 2107 #define __Pyx_KwargsAsDict_FASTCALL(kw, kwvalues) _PyStack_AsDict(kwvalues, kw)
jpayne@68 2108 #endif
jpayne@68 2109 #define __Pyx_Arg_NewRef_FASTCALL(arg) arg /* no-op, __Pyx_Arg_FASTCALL is direct and this needs
jpayne@68 2110 to have the same reference counting */
jpayne@68 2111 #define __Pyx_Arg_XDECREF_FASTCALL(arg)
jpayne@68 2112 #else
jpayne@68 2113 #define __Pyx_Arg_FASTCALL __Pyx_Arg_VARARGS
jpayne@68 2114 #define __Pyx_NumKwargs_FASTCALL __Pyx_NumKwargs_VARARGS
jpayne@68 2115 #define __Pyx_KwValues_FASTCALL __Pyx_KwValues_VARARGS
jpayne@68 2116 #define __Pyx_GetKwValue_FASTCALL __Pyx_GetKwValue_VARARGS
jpayne@68 2117 #define __Pyx_KwargsAsDict_FASTCALL __Pyx_KwargsAsDict_VARARGS
jpayne@68 2118 #define __Pyx_Arg_NewRef_FASTCALL(arg) __Pyx_Arg_NewRef_VARARGS(arg)
jpayne@68 2119 #define __Pyx_Arg_XDECREF_FASTCALL(arg) __Pyx_Arg_XDECREF_VARARGS(arg)
jpayne@68 2120 #endif
jpayne@68 2121 #if CYTHON_COMPILING_IN_CPYTHON && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
jpayne@68 2122 #define __Pyx_ArgsSlice_VARARGS(args, start, stop) __Pyx_PyTuple_FromArray(&__Pyx_Arg_VARARGS(args, start), stop - start)
jpayne@68 2123 #define __Pyx_ArgsSlice_FASTCALL(args, start, stop) __Pyx_PyTuple_FromArray(&__Pyx_Arg_FASTCALL(args, start), stop - start)
jpayne@68 2124 #else
jpayne@68 2125 #define __Pyx_ArgsSlice_VARARGS(args, start, stop) PyTuple_GetSlice(args, start, stop)
jpayne@68 2126 #define __Pyx_ArgsSlice_FASTCALL(args, start, stop) PyTuple_GetSlice(args, start, stop)
jpayne@68 2127 #endif
jpayne@68 2128
jpayne@68 2129 /* Profile.proto */
jpayne@68 2130 #ifndef CYTHON_PROFILE
jpayne@68 2131 #if CYTHON_COMPILING_IN_LIMITED_API || CYTHON_COMPILING_IN_PYPY
jpayne@68 2132 #define CYTHON_PROFILE 0
jpayne@68 2133 #else
jpayne@68 2134 #define CYTHON_PROFILE 1
jpayne@68 2135 #endif
jpayne@68 2136 #endif
jpayne@68 2137 #ifndef CYTHON_TRACE_NOGIL
jpayne@68 2138 #define CYTHON_TRACE_NOGIL 0
jpayne@68 2139 #else
jpayne@68 2140 #if CYTHON_TRACE_NOGIL && !defined(CYTHON_TRACE)
jpayne@68 2141 #define CYTHON_TRACE 1
jpayne@68 2142 #endif
jpayne@68 2143 #endif
jpayne@68 2144 #ifndef CYTHON_TRACE
jpayne@68 2145 #define CYTHON_TRACE 0
jpayne@68 2146 #endif
jpayne@68 2147 #if CYTHON_TRACE
jpayne@68 2148 #undef CYTHON_PROFILE_REUSE_FRAME
jpayne@68 2149 #endif
jpayne@68 2150 #ifndef CYTHON_PROFILE_REUSE_FRAME
jpayne@68 2151 #define CYTHON_PROFILE_REUSE_FRAME 0
jpayne@68 2152 #endif
jpayne@68 2153 #if CYTHON_PROFILE || CYTHON_TRACE
jpayne@68 2154 #include "compile.h"
jpayne@68 2155 #include "frameobject.h"
jpayne@68 2156 #include "traceback.h"
jpayne@68 2157 #if PY_VERSION_HEX >= 0x030b00a6
jpayne@68 2158 #ifndef Py_BUILD_CORE
jpayne@68 2159 #define Py_BUILD_CORE 1
jpayne@68 2160 #endif
jpayne@68 2161 #include "internal/pycore_frame.h"
jpayne@68 2162 #endif
jpayne@68 2163 #if CYTHON_PROFILE_REUSE_FRAME
jpayne@68 2164 #define CYTHON_FRAME_MODIFIER static
jpayne@68 2165 #define CYTHON_FRAME_DEL(frame)
jpayne@68 2166 #else
jpayne@68 2167 #define CYTHON_FRAME_MODIFIER
jpayne@68 2168 #define CYTHON_FRAME_DEL(frame) Py_CLEAR(frame)
jpayne@68 2169 #endif
jpayne@68 2170 #define __Pyx_TraceDeclarations\
jpayne@68 2171 static PyCodeObject *__pyx_frame_code = NULL;\
jpayne@68 2172 CYTHON_FRAME_MODIFIER PyFrameObject *__pyx_frame = NULL;\
jpayne@68 2173 int __Pyx_use_tracing = 0;
jpayne@68 2174 #define __Pyx_TraceFrameInit(codeobj)\
jpayne@68 2175 if (codeobj) __pyx_frame_code = (PyCodeObject*) codeobj;
jpayne@68 2176 #if PY_VERSION_HEX >= 0x030b00a2
jpayne@68 2177 #if PY_VERSION_HEX >= 0x030C00b1
jpayne@68 2178 #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\
jpayne@68 2179 ((!(check_tracing) || !(tstate)->tracing) &&\
jpayne@68 2180 (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc)))
jpayne@68 2181 #else
jpayne@68 2182 #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\
jpayne@68 2183 (unlikely((tstate)->cframe->use_tracing) &&\
jpayne@68 2184 (!(check_tracing) || !(tstate)->tracing) &&\
jpayne@68 2185 (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc)))
jpayne@68 2186 #endif
jpayne@68 2187 #define __Pyx_EnterTracing(tstate) PyThreadState_EnterTracing(tstate)
jpayne@68 2188 #define __Pyx_LeaveTracing(tstate) PyThreadState_LeaveTracing(tstate)
jpayne@68 2189 #elif PY_VERSION_HEX >= 0x030a00b1
jpayne@68 2190 #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\
jpayne@68 2191 (unlikely((tstate)->cframe->use_tracing) &&\
jpayne@68 2192 (!(check_tracing) || !(tstate)->tracing) &&\
jpayne@68 2193 (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc)))
jpayne@68 2194 #define __Pyx_EnterTracing(tstate)\
jpayne@68 2195 do { tstate->tracing++; tstate->cframe->use_tracing = 0; } while (0)
jpayne@68 2196 #define __Pyx_LeaveTracing(tstate)\
jpayne@68 2197 do {\
jpayne@68 2198 tstate->tracing--;\
jpayne@68 2199 tstate->cframe->use_tracing = ((CYTHON_TRACE && tstate->c_tracefunc != NULL)\
jpayne@68 2200 || tstate->c_profilefunc != NULL);\
jpayne@68 2201 } while (0)
jpayne@68 2202 #else
jpayne@68 2203 #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\
jpayne@68 2204 (unlikely((tstate)->use_tracing) &&\
jpayne@68 2205 (!(check_tracing) || !(tstate)->tracing) &&\
jpayne@68 2206 (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc)))
jpayne@68 2207 #define __Pyx_EnterTracing(tstate)\
jpayne@68 2208 do { tstate->tracing++; tstate->use_tracing = 0; } while (0)
jpayne@68 2209 #define __Pyx_LeaveTracing(tstate)\
jpayne@68 2210 do {\
jpayne@68 2211 tstate->tracing--;\
jpayne@68 2212 tstate->use_tracing = ((CYTHON_TRACE && tstate->c_tracefunc != NULL)\
jpayne@68 2213 || tstate->c_profilefunc != NULL);\
jpayne@68 2214 } while (0)
jpayne@68 2215 #endif
jpayne@68 2216 #ifdef WITH_THREAD
jpayne@68 2217 #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\
jpayne@68 2218 if (nogil) {\
jpayne@68 2219 if (CYTHON_TRACE_NOGIL) {\
jpayne@68 2220 PyThreadState *tstate;\
jpayne@68 2221 PyGILState_STATE state = PyGILState_Ensure();\
jpayne@68 2222 tstate = __Pyx_PyThreadState_Current;\
jpayne@68 2223 if (__Pyx_IsTracing(tstate, 1, 1)) {\
jpayne@68 2224 __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\
jpayne@68 2225 }\
jpayne@68 2226 PyGILState_Release(state);\
jpayne@68 2227 if (unlikely(__Pyx_use_tracing < 0)) goto_error;\
jpayne@68 2228 }\
jpayne@68 2229 } else {\
jpayne@68 2230 PyThreadState* tstate = PyThreadState_GET();\
jpayne@68 2231 if (__Pyx_IsTracing(tstate, 1, 1)) {\
jpayne@68 2232 __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\
jpayne@68 2233 if (unlikely(__Pyx_use_tracing < 0)) goto_error;\
jpayne@68 2234 }\
jpayne@68 2235 }
jpayne@68 2236 #else
jpayne@68 2237 #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\
jpayne@68 2238 { PyThreadState* tstate = PyThreadState_GET();\
jpayne@68 2239 if (__Pyx_IsTracing(tstate, 1, 1)) {\
jpayne@68 2240 __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\
jpayne@68 2241 if (unlikely(__Pyx_use_tracing < 0)) goto_error;\
jpayne@68 2242 }\
jpayne@68 2243 }
jpayne@68 2244 #endif
jpayne@68 2245 #define __Pyx_TraceException()\
jpayne@68 2246 if (likely(!__Pyx_use_tracing)); else {\
jpayne@68 2247 PyThreadState* tstate = __Pyx_PyThreadState_Current;\
jpayne@68 2248 if (__Pyx_IsTracing(tstate, 0, 1)) {\
jpayne@68 2249 __Pyx_EnterTracing(tstate);\
jpayne@68 2250 PyObject *exc_info = __Pyx_GetExceptionTuple(tstate);\
jpayne@68 2251 if (exc_info) {\
jpayne@68 2252 if (CYTHON_TRACE && tstate->c_tracefunc)\
jpayne@68 2253 tstate->c_tracefunc(\
jpayne@68 2254 tstate->c_traceobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\
jpayne@68 2255 tstate->c_profilefunc(\
jpayne@68 2256 tstate->c_profileobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\
jpayne@68 2257 Py_DECREF(exc_info);\
jpayne@68 2258 }\
jpayne@68 2259 __Pyx_LeaveTracing(tstate);\
jpayne@68 2260 }\
jpayne@68 2261 }
jpayne@68 2262 static void __Pyx_call_return_trace_func(PyThreadState *tstate, PyFrameObject *frame, PyObject *result) {
jpayne@68 2263 PyObject *type, *value, *traceback;
jpayne@68 2264 __Pyx_ErrFetchInState(tstate, &type, &value, &traceback);
jpayne@68 2265 __Pyx_EnterTracing(tstate);
jpayne@68 2266 if (CYTHON_TRACE && tstate->c_tracefunc)
jpayne@68 2267 tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_RETURN, result);
jpayne@68 2268 if (tstate->c_profilefunc)
jpayne@68 2269 tstate->c_profilefunc(tstate->c_profileobj, frame, PyTrace_RETURN, result);
jpayne@68 2270 CYTHON_FRAME_DEL(frame);
jpayne@68 2271 __Pyx_LeaveTracing(tstate);
jpayne@68 2272 __Pyx_ErrRestoreInState(tstate, type, value, traceback);
jpayne@68 2273 }
jpayne@68 2274 #ifdef WITH_THREAD
jpayne@68 2275 #define __Pyx_TraceReturn(result, nogil)\
jpayne@68 2276 if (likely(!__Pyx_use_tracing)); else {\
jpayne@68 2277 if (nogil) {\
jpayne@68 2278 if (CYTHON_TRACE_NOGIL) {\
jpayne@68 2279 PyThreadState *tstate;\
jpayne@68 2280 PyGILState_STATE state = PyGILState_Ensure();\
jpayne@68 2281 tstate = __Pyx_PyThreadState_Current;\
jpayne@68 2282 if (__Pyx_IsTracing(tstate, 0, 0)) {\
jpayne@68 2283 __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\
jpayne@68 2284 }\
jpayne@68 2285 PyGILState_Release(state);\
jpayne@68 2286 }\
jpayne@68 2287 } else {\
jpayne@68 2288 PyThreadState* tstate = __Pyx_PyThreadState_Current;\
jpayne@68 2289 if (__Pyx_IsTracing(tstate, 0, 0)) {\
jpayne@68 2290 __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\
jpayne@68 2291 }\
jpayne@68 2292 }\
jpayne@68 2293 }
jpayne@68 2294 #else
jpayne@68 2295 #define __Pyx_TraceReturn(result, nogil)\
jpayne@68 2296 if (likely(!__Pyx_use_tracing)); else {\
jpayne@68 2297 PyThreadState* tstate = __Pyx_PyThreadState_Current;\
jpayne@68 2298 if (__Pyx_IsTracing(tstate, 0, 0)) {\
jpayne@68 2299 __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\
jpayne@68 2300 }\
jpayne@68 2301 }
jpayne@68 2302 #endif
jpayne@68 2303 static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno);
jpayne@68 2304 static int __Pyx_TraceSetupAndCall(PyCodeObject** code, PyFrameObject** frame, PyThreadState* tstate, const char *funcname, const char *srcfile, int firstlineno);
jpayne@68 2305 #else
jpayne@68 2306 #define __Pyx_TraceDeclarations
jpayne@68 2307 #define __Pyx_TraceFrameInit(codeobj)
jpayne@68 2308 #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error;
jpayne@68 2309 #define __Pyx_TraceException()
jpayne@68 2310 #define __Pyx_TraceReturn(result, nogil)
jpayne@68 2311 #endif
jpayne@68 2312 #if CYTHON_TRACE
jpayne@68 2313 static int __Pyx_call_line_trace_func(PyThreadState *tstate, PyFrameObject *frame, int lineno) {
jpayne@68 2314 int ret;
jpayne@68 2315 PyObject *type, *value, *traceback;
jpayne@68 2316 __Pyx_ErrFetchInState(tstate, &type, &value, &traceback);
jpayne@68 2317 __Pyx_PyFrame_SetLineNumber(frame, lineno);
jpayne@68 2318 __Pyx_EnterTracing(tstate);
jpayne@68 2319 ret = tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_LINE, NULL);
jpayne@68 2320 __Pyx_LeaveTracing(tstate);
jpayne@68 2321 if (likely(!ret)) {
jpayne@68 2322 __Pyx_ErrRestoreInState(tstate, type, value, traceback);
jpayne@68 2323 } else {
jpayne@68 2324 Py_XDECREF(type);
jpayne@68 2325 Py_XDECREF(value);
jpayne@68 2326 Py_XDECREF(traceback);
jpayne@68 2327 }
jpayne@68 2328 return ret;
jpayne@68 2329 }
jpayne@68 2330 #ifdef WITH_THREAD
jpayne@68 2331 #define __Pyx_TraceLine(lineno, nogil, goto_error)\
jpayne@68 2332 if (likely(!__Pyx_use_tracing)); else {\
jpayne@68 2333 if (nogil) {\
jpayne@68 2334 if (CYTHON_TRACE_NOGIL) {\
jpayne@68 2335 int ret = 0;\
jpayne@68 2336 PyThreadState *tstate;\
jpayne@68 2337 PyGILState_STATE state = __Pyx_PyGILState_Ensure();\
jpayne@68 2338 tstate = __Pyx_PyThreadState_Current;\
jpayne@68 2339 if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\
jpayne@68 2340 ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\
jpayne@68 2341 }\
jpayne@68 2342 __Pyx_PyGILState_Release(state);\
jpayne@68 2343 if (unlikely(ret)) goto_error;\
jpayne@68 2344 }\
jpayne@68 2345 } else {\
jpayne@68 2346 PyThreadState* tstate = __Pyx_PyThreadState_Current;\
jpayne@68 2347 if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\
jpayne@68 2348 int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\
jpayne@68 2349 if (unlikely(ret)) goto_error;\
jpayne@68 2350 }\
jpayne@68 2351 }\
jpayne@68 2352 }
jpayne@68 2353 #else
jpayne@68 2354 #define __Pyx_TraceLine(lineno, nogil, goto_error)\
jpayne@68 2355 if (likely(!__Pyx_use_tracing)); else {\
jpayne@68 2356 PyThreadState* tstate = __Pyx_PyThreadState_Current;\
jpayne@68 2357 if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\
jpayne@68 2358 int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\
jpayne@68 2359 if (unlikely(ret)) goto_error;\
jpayne@68 2360 }\
jpayne@68 2361 }
jpayne@68 2362 #endif
jpayne@68 2363 #else
jpayne@68 2364 #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error;
jpayne@68 2365 #endif
jpayne@68 2366
jpayne@68 2367 /* RaiseDoubleKeywords.proto */
jpayne@68 2368 static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name);
jpayne@68 2369
jpayne@68 2370 /* ParseKeywords.proto */
jpayne@68 2371 static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject *const *kwvalues,
jpayne@68 2372 PyObject **argnames[],
jpayne@68 2373 PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,
jpayne@68 2374 const char* function_name);
jpayne@68 2375
jpayne@68 2376 /* RaiseArgTupleInvalid.proto */
jpayne@68 2377 static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
jpayne@68 2378 Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found);
jpayne@68 2379
jpayne@68 2380 /* PyFunctionFastCall.proto */
jpayne@68 2381 #if CYTHON_FAST_PYCALL
jpayne@68 2382 #if !CYTHON_VECTORCALL
jpayne@68 2383 #define __Pyx_PyFunction_FastCall(func, args, nargs)\
jpayne@68 2384 __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL)
jpayne@68 2385 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs);
jpayne@68 2386 #endif
jpayne@68 2387 #define __Pyx_BUILD_ASSERT_EXPR(cond)\
jpayne@68 2388 (sizeof(char [1 - 2*!(cond)]) - 1)
jpayne@68 2389 #ifndef Py_MEMBER_SIZE
jpayne@68 2390 #define Py_MEMBER_SIZE(type, member) sizeof(((type *)0)->member)
jpayne@68 2391 #endif
jpayne@68 2392 #if !CYTHON_VECTORCALL
jpayne@68 2393 #if PY_VERSION_HEX >= 0x03080000
jpayne@68 2394 #include "frameobject.h"
jpayne@68 2395 #if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 2396 #ifndef Py_BUILD_CORE
jpayne@68 2397 #define Py_BUILD_CORE 1
jpayne@68 2398 #endif
jpayne@68 2399 #include "internal/pycore_frame.h"
jpayne@68 2400 #endif
jpayne@68 2401 #define __Pxy_PyFrame_Initialize_Offsets()
jpayne@68 2402 #define __Pyx_PyFrame_GetLocalsplus(frame) ((frame)->f_localsplus)
jpayne@68 2403 #else
jpayne@68 2404 static size_t __pyx_pyframe_localsplus_offset = 0;
jpayne@68 2405 #include "frameobject.h"
jpayne@68 2406 #define __Pxy_PyFrame_Initialize_Offsets()\
jpayne@68 2407 ((void)__Pyx_BUILD_ASSERT_EXPR(sizeof(PyFrameObject) == offsetof(PyFrameObject, f_localsplus) + Py_MEMBER_SIZE(PyFrameObject, f_localsplus)),\
jpayne@68 2408 (void)(__pyx_pyframe_localsplus_offset = ((size_t)PyFrame_Type.tp_basicsize) - Py_MEMBER_SIZE(PyFrameObject, f_localsplus)))
jpayne@68 2409 #define __Pyx_PyFrame_GetLocalsplus(frame)\
jpayne@68 2410 (assert(__pyx_pyframe_localsplus_offset), (PyObject **)(((char *)(frame)) + __pyx_pyframe_localsplus_offset))
jpayne@68 2411 #endif
jpayne@68 2412 #endif
jpayne@68 2413 #endif
jpayne@68 2414
jpayne@68 2415 /* PyObjectCall.proto */
jpayne@68 2416 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 2417 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw);
jpayne@68 2418 #else
jpayne@68 2419 #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw)
jpayne@68 2420 #endif
jpayne@68 2421
jpayne@68 2422 /* PyObjectCallMethO.proto */
jpayne@68 2423 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 2424 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg);
jpayne@68 2425 #endif
jpayne@68 2426
jpayne@68 2427 /* PyObjectFastCall.proto */
jpayne@68 2428 #define __Pyx_PyObject_FastCall(func, args, nargs) __Pyx_PyObject_FastCallDict(func, args, (size_t)(nargs), NULL)
jpayne@68 2429 static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs);
jpayne@68 2430
jpayne@68 2431 /* WriteUnraisableException.proto */
jpayne@68 2432 static void __Pyx_WriteUnraisable(const char *name, int clineno,
jpayne@68 2433 int lineno, const char *filename,
jpayne@68 2434 int full_traceback, int nogil);
jpayne@68 2435
jpayne@68 2436 /* RaiseException.proto */
jpayne@68 2437 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause);
jpayne@68 2438
jpayne@68 2439 /* KeywordStringCheck.proto */
jpayne@68 2440 static int __Pyx_CheckKeywordStrings(PyObject *kw, const char* function_name, int kw_allowed);
jpayne@68 2441
jpayne@68 2442 /* PySequenceContains.proto */
jpayne@68 2443 static CYTHON_INLINE int __Pyx_PySequence_ContainsTF(PyObject* item, PyObject* seq, int eq) {
jpayne@68 2444 int result = PySequence_Contains(seq, item);
jpayne@68 2445 return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
jpayne@68 2446 }
jpayne@68 2447
jpayne@68 2448 /* ListAppend.proto */
jpayne@68 2449 #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
jpayne@68 2450 static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) {
jpayne@68 2451 PyListObject* L = (PyListObject*) list;
jpayne@68 2452 Py_ssize_t len = Py_SIZE(list);
jpayne@68 2453 if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) {
jpayne@68 2454 Py_INCREF(x);
jpayne@68 2455 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000
jpayne@68 2456 L->ob_item[len] = x;
jpayne@68 2457 #else
jpayne@68 2458 PyList_SET_ITEM(list, len, x);
jpayne@68 2459 #endif
jpayne@68 2460 __Pyx_SET_SIZE(list, len + 1);
jpayne@68 2461 return 0;
jpayne@68 2462 }
jpayne@68 2463 return PyList_Append(list, x);
jpayne@68 2464 }
jpayne@68 2465 #else
jpayne@68 2466 #define __Pyx_PyList_Append(L,x) PyList_Append(L,x)
jpayne@68 2467 #endif
jpayne@68 2468
jpayne@68 2469 /* PyObjectCall2Args.proto */
jpayne@68 2470 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2);
jpayne@68 2471
jpayne@68 2472 /* PyObjectCallOneArg.proto */
jpayne@68 2473 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg);
jpayne@68 2474
jpayne@68 2475 /* PyObjectGetMethod.proto */
jpayne@68 2476 static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method);
jpayne@68 2477
jpayne@68 2478 /* PyObjectCallMethod1.proto */
jpayne@68 2479 static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg);
jpayne@68 2480
jpayne@68 2481 /* StringJoin.proto */
jpayne@68 2482 #if PY_MAJOR_VERSION < 3
jpayne@68 2483 #define __Pyx_PyString_Join __Pyx_PyBytes_Join
jpayne@68 2484 #define __Pyx_PyBaseString_Join(s, v) (PyUnicode_CheckExact(s) ? PyUnicode_Join(s, v) : __Pyx_PyBytes_Join(s, v))
jpayne@68 2485 #else
jpayne@68 2486 #define __Pyx_PyString_Join PyUnicode_Join
jpayne@68 2487 #define __Pyx_PyBaseString_Join PyUnicode_Join
jpayne@68 2488 #endif
jpayne@68 2489 static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values);
jpayne@68 2490
jpayne@68 2491 /* PyObjectCallNoArg.proto */
jpayne@68 2492 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func);
jpayne@68 2493
jpayne@68 2494 /* ArgTypeTest.proto */
jpayne@68 2495 #define __Pyx_ArgTypeTest(obj, type, none_allowed, name, exact)\
jpayne@68 2496 ((likely(__Pyx_IS_TYPE(obj, type) | (none_allowed && (obj == Py_None)))) ? 1 :\
jpayne@68 2497 __Pyx__ArgTypeTest(obj, type, name, exact))
jpayne@68 2498 static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact);
jpayne@68 2499
jpayne@68 2500 /* PyObjectSetAttrStr.proto */
jpayne@68 2501 #if CYTHON_USE_TYPE_SLOTS
jpayne@68 2502 #define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o, n, NULL)
jpayne@68 2503 static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value);
jpayne@68 2504 #else
jpayne@68 2505 #define __Pyx_PyObject_DelAttrStr(o,n) PyObject_DelAttr(o,n)
jpayne@68 2506 #define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v)
jpayne@68 2507 #endif
jpayne@68 2508
jpayne@68 2509 /* PyObjectFormatSimple.proto */
jpayne@68 2510 #if CYTHON_COMPILING_IN_PYPY
jpayne@68 2511 #define __Pyx_PyObject_FormatSimple(s, f) (\
jpayne@68 2512 likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\
jpayne@68 2513 PyObject_Format(s, f))
jpayne@68 2514 #elif PY_MAJOR_VERSION < 3
jpayne@68 2515 #define __Pyx_PyObject_FormatSimple(s, f) (\
jpayne@68 2516 likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\
jpayne@68 2517 likely(PyString_CheckExact(s)) ? PyUnicode_FromEncodedObject(s, NULL, "strict") :\
jpayne@68 2518 PyObject_Format(s, f))
jpayne@68 2519 #elif CYTHON_USE_TYPE_SLOTS
jpayne@68 2520 #define __Pyx_PyObject_FormatSimple(s, f) (\
jpayne@68 2521 likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\
jpayne@68 2522 likely(PyLong_CheckExact(s)) ? PyLong_Type.tp_repr(s) :\
jpayne@68 2523 likely(PyFloat_CheckExact(s)) ? PyFloat_Type.tp_repr(s) :\
jpayne@68 2524 PyObject_Format(s, f))
jpayne@68 2525 #else
jpayne@68 2526 #define __Pyx_PyObject_FormatSimple(s, f) (\
jpayne@68 2527 likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\
jpayne@68 2528 PyObject_Format(s, f))
jpayne@68 2529 #endif
jpayne@68 2530
jpayne@68 2531 /* JoinPyUnicode.proto */
jpayne@68 2532 static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_count, Py_ssize_t result_ulength,
jpayne@68 2533 Py_UCS4 max_char);
jpayne@68 2534
jpayne@68 2535 /* PyDictVersioning.proto */
jpayne@68 2536 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS
jpayne@68 2537 #define __PYX_DICT_VERSION_INIT ((PY_UINT64_T) -1)
jpayne@68 2538 #define __PYX_GET_DICT_VERSION(dict) (((PyDictObject*)(dict))->ma_version_tag)
jpayne@68 2539 #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\
jpayne@68 2540 (version_var) = __PYX_GET_DICT_VERSION(dict);\
jpayne@68 2541 (cache_var) = (value);
jpayne@68 2542 #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\
jpayne@68 2543 static PY_UINT64_T __pyx_dict_version = 0;\
jpayne@68 2544 static PyObject *__pyx_dict_cached_value = NULL;\
jpayne@68 2545 if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\
jpayne@68 2546 (VAR) = __pyx_dict_cached_value;\
jpayne@68 2547 } else {\
jpayne@68 2548 (VAR) = __pyx_dict_cached_value = (LOOKUP);\
jpayne@68 2549 __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\
jpayne@68 2550 }\
jpayne@68 2551 }
jpayne@68 2552 static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj);
jpayne@68 2553 static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj);
jpayne@68 2554 static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version);
jpayne@68 2555 #else
jpayne@68 2556 #define __PYX_GET_DICT_VERSION(dict) (0)
jpayne@68 2557 #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)
jpayne@68 2558 #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) (VAR) = (LOOKUP);
jpayne@68 2559 #endif
jpayne@68 2560
jpayne@68 2561 /* GetModuleGlobalName.proto */
jpayne@68 2562 #if CYTHON_USE_DICT_VERSIONS
jpayne@68 2563 #define __Pyx_GetModuleGlobalName(var, name) do {\
jpayne@68 2564 static PY_UINT64_T __pyx_dict_version = 0;\
jpayne@68 2565 static PyObject *__pyx_dict_cached_value = NULL;\
jpayne@68 2566 (var) = (likely(__pyx_dict_version == __PYX_GET_DICT_VERSION(__pyx_d))) ?\
jpayne@68 2567 (likely(__pyx_dict_cached_value) ? __Pyx_NewRef(__pyx_dict_cached_value) : __Pyx_GetBuiltinName(name)) :\
jpayne@68 2568 __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\
jpayne@68 2569 } while(0)
jpayne@68 2570 #define __Pyx_GetModuleGlobalNameUncached(var, name) do {\
jpayne@68 2571 PY_UINT64_T __pyx_dict_version;\
jpayne@68 2572 PyObject *__pyx_dict_cached_value;\
jpayne@68 2573 (var) = __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\
jpayne@68 2574 } while(0)
jpayne@68 2575 static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value);
jpayne@68 2576 #else
jpayne@68 2577 #define __Pyx_GetModuleGlobalName(var, name) (var) = __Pyx__GetModuleGlobalName(name)
jpayne@68 2578 #define __Pyx_GetModuleGlobalNameUncached(var, name) (var) = __Pyx__GetModuleGlobalName(name)
jpayne@68 2579 static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name);
jpayne@68 2580 #endif
jpayne@68 2581
jpayne@68 2582 /* GetItemInt.proto */
jpayne@68 2583 #define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
jpayne@68 2584 (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
jpayne@68 2585 __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\
jpayne@68 2586 (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\
jpayne@68 2587 __Pyx_GetItemInt_Generic(o, to_py_func(i))))
jpayne@68 2588 #define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
jpayne@68 2589 (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
jpayne@68 2590 __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
jpayne@68 2591 (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL))
jpayne@68 2592 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
jpayne@68 2593 int wraparound, int boundscheck);
jpayne@68 2594 #define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
jpayne@68 2595 (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
jpayne@68 2596 __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
jpayne@68 2597 (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL))
jpayne@68 2598 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
jpayne@68 2599 int wraparound, int boundscheck);
jpayne@68 2600 static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j);
jpayne@68 2601 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i,
jpayne@68 2602 int is_list, int wraparound, int boundscheck);
jpayne@68 2603
jpayne@68 2604 /* ObjectGetItem.proto */
jpayne@68 2605 #if CYTHON_USE_TYPE_SLOTS
jpayne@68 2606 static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject *key);
jpayne@68 2607 #else
jpayne@68 2608 #define __Pyx_PyObject_GetItem(obj, key) PyObject_GetItem(obj, key)
jpayne@68 2609 #endif
jpayne@68 2610
jpayne@68 2611 /* GetException.proto */
jpayne@68 2612 #if CYTHON_FAST_THREAD_STATE
jpayne@68 2613 #define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb)
jpayne@68 2614 static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
jpayne@68 2615 #else
jpayne@68 2616 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb);
jpayne@68 2617 #endif
jpayne@68 2618
jpayne@68 2619 /* SwapException.proto */
jpayne@68 2620 #if CYTHON_FAST_THREAD_STATE
jpayne@68 2621 #define __Pyx_ExceptionSwap(type, value, tb) __Pyx__ExceptionSwap(__pyx_tstate, type, value, tb)
jpayne@68 2622 static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
jpayne@68 2623 #else
jpayne@68 2624 static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb);
jpayne@68 2625 #endif
jpayne@68 2626
jpayne@68 2627 /* GetTopmostException.proto */
jpayne@68 2628 #if CYTHON_USE_EXC_INFO_STACK && CYTHON_FAST_THREAD_STATE
jpayne@68 2629 static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate);
jpayne@68 2630 #endif
jpayne@68 2631
jpayne@68 2632 /* SaveResetException.proto */
jpayne@68 2633 #if CYTHON_FAST_THREAD_STATE
jpayne@68 2634 #define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb)
jpayne@68 2635 static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
jpayne@68 2636 #define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb)
jpayne@68 2637 static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
jpayne@68 2638 #else
jpayne@68 2639 #define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb)
jpayne@68 2640 #define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb)
jpayne@68 2641 #endif
jpayne@68 2642
jpayne@68 2643 /* PyIntBinop.proto */
jpayne@68 2644 #if !CYTHON_COMPILING_IN_PYPY
jpayne@68 2645 static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check);
jpayne@68 2646 #else
jpayne@68 2647 #define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace, zerodivision_check)\
jpayne@68 2648 (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2))
jpayne@68 2649 #endif
jpayne@68 2650
jpayne@68 2651 /* PyObject_Unicode.proto */
jpayne@68 2652 #if PY_MAJOR_VERSION >= 3
jpayne@68 2653 #define __Pyx_PyObject_Unicode(obj)\
jpayne@68 2654 (likely(PyUnicode_CheckExact(obj)) ? __Pyx_NewRef(obj) : PyObject_Str(obj))
jpayne@68 2655 #else
jpayne@68 2656 #define __Pyx_PyObject_Unicode(obj)\
jpayne@68 2657 (likely(PyUnicode_CheckExact(obj)) ? __Pyx_NewRef(obj) : PyObject_Unicode(obj))
jpayne@68 2658 #endif
jpayne@68 2659
jpayne@68 2660 /* RaiseTooManyValuesToUnpack.proto */
jpayne@68 2661 static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
jpayne@68 2662
jpayne@68 2663 /* RaiseNeedMoreValuesToUnpack.proto */
jpayne@68 2664 static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
jpayne@68 2665
jpayne@68 2666 /* IterFinish.proto */
jpayne@68 2667 static CYTHON_INLINE int __Pyx_IterFinish(void);
jpayne@68 2668
jpayne@68 2669 /* UnpackItemEndCheck.proto */
jpayne@68 2670 static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected);
jpayne@68 2671
jpayne@68 2672 /* PyIntCompare.proto */
jpayne@68 2673 static CYTHON_INLINE PyObject* __Pyx_PyInt_NeObjC(PyObject *op1, PyObject *op2, long intval, long inplace);
jpayne@68 2674
jpayne@68 2675 /* IncludeStructmemberH.proto */
jpayne@68 2676 #include <structmember.h>
jpayne@68 2677
jpayne@68 2678 /* FixUpExtensionType.proto */
jpayne@68 2679 #if CYTHON_USE_TYPE_SPECS
jpayne@68 2680 static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type);
jpayne@68 2681 #endif
jpayne@68 2682
jpayne@68 2683 /* PyObjectCallMethod0.proto */
jpayne@68 2684 static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name);
jpayne@68 2685
jpayne@68 2686 /* ValidateBasesTuple.proto */
jpayne@68 2687 #if CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_USE_TYPE_SPECS
jpayne@68 2688 static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffset, PyObject *bases);
jpayne@68 2689 #endif
jpayne@68 2690
jpayne@68 2691 /* PyType_Ready.proto */
jpayne@68 2692 CYTHON_UNUSED static int __Pyx_PyType_Ready(PyTypeObject *t);
jpayne@68 2693
jpayne@68 2694 /* PyObject_GenericGetAttrNoDict.proto */
jpayne@68 2695 #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
jpayne@68 2696 static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name);
jpayne@68 2697 #else
jpayne@68 2698 #define __Pyx_PyObject_GenericGetAttrNoDict PyObject_GenericGetAttr
jpayne@68 2699 #endif
jpayne@68 2700
jpayne@68 2701 /* PyObject_GenericGetAttr.proto */
jpayne@68 2702 #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
jpayne@68 2703 static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name);
jpayne@68 2704 #else
jpayne@68 2705 #define __Pyx_PyObject_GenericGetAttr PyObject_GenericGetAttr
jpayne@68 2706 #endif
jpayne@68 2707
jpayne@68 2708 /* SetVTable.proto */
jpayne@68 2709 static int __Pyx_SetVtable(PyTypeObject* typeptr , void* vtable);
jpayne@68 2710
jpayne@68 2711 /* GetVTable.proto */
jpayne@68 2712 static void* __Pyx_GetVtable(PyTypeObject *type);
jpayne@68 2713
jpayne@68 2714 /* MergeVTables.proto */
jpayne@68 2715 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 2716 static int __Pyx_MergeVtables(PyTypeObject *type);
jpayne@68 2717 #endif
jpayne@68 2718
jpayne@68 2719 /* SetupReduce.proto */
jpayne@68 2720 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 2721 static int __Pyx_setup_reduce(PyObject* type_obj);
jpayne@68 2722 #endif
jpayne@68 2723
jpayne@68 2724 /* TypeImport.proto */
jpayne@68 2725 #ifndef __PYX_HAVE_RT_ImportType_proto_3_0_11
jpayne@68 2726 #define __PYX_HAVE_RT_ImportType_proto_3_0_11
jpayne@68 2727 #if defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L
jpayne@68 2728 #include <stdalign.h>
jpayne@68 2729 #endif
jpayne@68 2730 #if (defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L) || __cplusplus >= 201103L
jpayne@68 2731 #define __PYX_GET_STRUCT_ALIGNMENT_3_0_11(s) alignof(s)
jpayne@68 2732 #else
jpayne@68 2733 #define __PYX_GET_STRUCT_ALIGNMENT_3_0_11(s) sizeof(void*)
jpayne@68 2734 #endif
jpayne@68 2735 enum __Pyx_ImportType_CheckSize_3_0_11 {
jpayne@68 2736 __Pyx_ImportType_CheckSize_Error_3_0_11 = 0,
jpayne@68 2737 __Pyx_ImportType_CheckSize_Warn_3_0_11 = 1,
jpayne@68 2738 __Pyx_ImportType_CheckSize_Ignore_3_0_11 = 2
jpayne@68 2739 };
jpayne@68 2740 static PyTypeObject *__Pyx_ImportType_3_0_11(PyObject* module, const char *module_name, const char *class_name, size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_11 check_size);
jpayne@68 2741 #endif
jpayne@68 2742
jpayne@68 2743 /* Import.proto */
jpayne@68 2744 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level);
jpayne@68 2745
jpayne@68 2746 /* ImportDottedModule.proto */
jpayne@68 2747 static PyObject *__Pyx_ImportDottedModule(PyObject *name, PyObject *parts_tuple);
jpayne@68 2748 #if PY_MAJOR_VERSION >= 3
jpayne@68 2749 static PyObject *__Pyx_ImportDottedModule_WalkParts(PyObject *module, PyObject *name, PyObject *parts_tuple);
jpayne@68 2750 #endif
jpayne@68 2751
jpayne@68 2752 /* ImportFrom.proto */
jpayne@68 2753 static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name);
jpayne@68 2754
jpayne@68 2755 /* FetchSharedCythonModule.proto */
jpayne@68 2756 static PyObject *__Pyx_FetchSharedCythonABIModule(void);
jpayne@68 2757
jpayne@68 2758 /* FetchCommonType.proto */
jpayne@68 2759 #if !CYTHON_USE_TYPE_SPECS
jpayne@68 2760 static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type);
jpayne@68 2761 #else
jpayne@68 2762 static PyTypeObject* __Pyx_FetchCommonTypeFromSpec(PyObject *module, PyType_Spec *spec, PyObject *bases);
jpayne@68 2763 #endif
jpayne@68 2764
jpayne@68 2765 /* PyMethodNew.proto */
jpayne@68 2766 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 2767 static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) {
jpayne@68 2768 PyObject *typesModule=NULL, *methodType=NULL, *result=NULL;
jpayne@68 2769 CYTHON_UNUSED_VAR(typ);
jpayne@68 2770 if (!self)
jpayne@68 2771 return __Pyx_NewRef(func);
jpayne@68 2772 typesModule = PyImport_ImportModule("types");
jpayne@68 2773 if (!typesModule) return NULL;
jpayne@68 2774 methodType = PyObject_GetAttrString(typesModule, "MethodType");
jpayne@68 2775 Py_DECREF(typesModule);
jpayne@68 2776 if (!methodType) return NULL;
jpayne@68 2777 result = PyObject_CallFunctionObjArgs(methodType, func, self, NULL);
jpayne@68 2778 Py_DECREF(methodType);
jpayne@68 2779 return result;
jpayne@68 2780 }
jpayne@68 2781 #elif PY_MAJOR_VERSION >= 3
jpayne@68 2782 static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) {
jpayne@68 2783 CYTHON_UNUSED_VAR(typ);
jpayne@68 2784 if (!self)
jpayne@68 2785 return __Pyx_NewRef(func);
jpayne@68 2786 return PyMethod_New(func, self);
jpayne@68 2787 }
jpayne@68 2788 #else
jpayne@68 2789 #define __Pyx_PyMethod_New PyMethod_New
jpayne@68 2790 #endif
jpayne@68 2791
jpayne@68 2792 /* PyVectorcallFastCallDict.proto */
jpayne@68 2793 #if CYTHON_METH_FASTCALL
jpayne@68 2794 static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw);
jpayne@68 2795 #endif
jpayne@68 2796
jpayne@68 2797 /* CythonFunctionShared.proto */
jpayne@68 2798 #define __Pyx_CyFunction_USED
jpayne@68 2799 #define __Pyx_CYFUNCTION_STATICMETHOD 0x01
jpayne@68 2800 #define __Pyx_CYFUNCTION_CLASSMETHOD 0x02
jpayne@68 2801 #define __Pyx_CYFUNCTION_CCLASS 0x04
jpayne@68 2802 #define __Pyx_CYFUNCTION_COROUTINE 0x08
jpayne@68 2803 #define __Pyx_CyFunction_GetClosure(f)\
jpayne@68 2804 (((__pyx_CyFunctionObject *) (f))->func_closure)
jpayne@68 2805 #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 2806 #define __Pyx_CyFunction_GetClassObj(f)\
jpayne@68 2807 (((__pyx_CyFunctionObject *) (f))->func_classobj)
jpayne@68 2808 #else
jpayne@68 2809 #define __Pyx_CyFunction_GetClassObj(f)\
jpayne@68 2810 ((PyObject*) ((PyCMethodObject *) (f))->mm_class)
jpayne@68 2811 #endif
jpayne@68 2812 #define __Pyx_CyFunction_SetClassObj(f, classobj)\
jpayne@68 2813 __Pyx__CyFunction_SetClassObj((__pyx_CyFunctionObject *) (f), (classobj))
jpayne@68 2814 #define __Pyx_CyFunction_Defaults(type, f)\
jpayne@68 2815 ((type *)(((__pyx_CyFunctionObject *) (f))->defaults))
jpayne@68 2816 #define __Pyx_CyFunction_SetDefaultsGetter(f, g)\
jpayne@68 2817 ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g)
jpayne@68 2818 typedef struct {
jpayne@68 2819 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 2820 PyObject_HEAD
jpayne@68 2821 PyObject *func;
jpayne@68 2822 #elif PY_VERSION_HEX < 0x030900B1
jpayne@68 2823 PyCFunctionObject func;
jpayne@68 2824 #else
jpayne@68 2825 PyCMethodObject func;
jpayne@68 2826 #endif
jpayne@68 2827 #if CYTHON_BACKPORT_VECTORCALL
jpayne@68 2828 __pyx_vectorcallfunc func_vectorcall;
jpayne@68 2829 #endif
jpayne@68 2830 #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 2831 PyObject *func_weakreflist;
jpayne@68 2832 #endif
jpayne@68 2833 PyObject *func_dict;
jpayne@68 2834 PyObject *func_name;
jpayne@68 2835 PyObject *func_qualname;
jpayne@68 2836 PyObject *func_doc;
jpayne@68 2837 PyObject *func_globals;
jpayne@68 2838 PyObject *func_code;
jpayne@68 2839 PyObject *func_closure;
jpayne@68 2840 #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 2841 PyObject *func_classobj;
jpayne@68 2842 #endif
jpayne@68 2843 void *defaults;
jpayne@68 2844 int defaults_pyobjects;
jpayne@68 2845 size_t defaults_size;
jpayne@68 2846 int flags;
jpayne@68 2847 PyObject *defaults_tuple;
jpayne@68 2848 PyObject *defaults_kwdict;
jpayne@68 2849 PyObject *(*defaults_getter)(PyObject *);
jpayne@68 2850 PyObject *func_annotations;
jpayne@68 2851 PyObject *func_is_coroutine;
jpayne@68 2852 } __pyx_CyFunctionObject;
jpayne@68 2853 #undef __Pyx_CyOrPyCFunction_Check
jpayne@68 2854 #define __Pyx_CyFunction_Check(obj) __Pyx_TypeCheck(obj, __pyx_CyFunctionType)
jpayne@68 2855 #define __Pyx_CyOrPyCFunction_Check(obj) __Pyx_TypeCheck2(obj, __pyx_CyFunctionType, &PyCFunction_Type)
jpayne@68 2856 #define __Pyx_CyFunction_CheckExact(obj) __Pyx_IS_TYPE(obj, __pyx_CyFunctionType)
jpayne@68 2857 static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc);
jpayne@68 2858 #undef __Pyx_IsSameCFunction
jpayne@68 2859 #define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCyOrCFunction(func, cfunc)
jpayne@68 2860 static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject* op, PyMethodDef *ml,
jpayne@68 2861 int flags, PyObject* qualname,
jpayne@68 2862 PyObject *closure,
jpayne@68 2863 PyObject *module, PyObject *globals,
jpayne@68 2864 PyObject* code);
jpayne@68 2865 static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj);
jpayne@68 2866 static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m,
jpayne@68 2867 size_t size,
jpayne@68 2868 int pyobjects);
jpayne@68 2869 static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m,
jpayne@68 2870 PyObject *tuple);
jpayne@68 2871 static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m,
jpayne@68 2872 PyObject *dict);
jpayne@68 2873 static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m,
jpayne@68 2874 PyObject *dict);
jpayne@68 2875 static int __pyx_CyFunction_init(PyObject *module);
jpayne@68 2876 #if CYTHON_METH_FASTCALL
jpayne@68 2877 static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames);
jpayne@68 2878 static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames);
jpayne@68 2879 static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames);
jpayne@68 2880 static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames);
jpayne@68 2881 #if CYTHON_BACKPORT_VECTORCALL
jpayne@68 2882 #define __Pyx_CyFunction_func_vectorcall(f) (((__pyx_CyFunctionObject*)f)->func_vectorcall)
jpayne@68 2883 #else
jpayne@68 2884 #define __Pyx_CyFunction_func_vectorcall(f) (((PyCFunctionObject*)f)->vectorcall)
jpayne@68 2885 #endif
jpayne@68 2886 #endif
jpayne@68 2887
jpayne@68 2888 /* CythonFunction.proto */
jpayne@68 2889 static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml,
jpayne@68 2890 int flags, PyObject* qualname,
jpayne@68 2891 PyObject *closure,
jpayne@68 2892 PyObject *module, PyObject *globals,
jpayne@68 2893 PyObject* code);
jpayne@68 2894
jpayne@68 2895 /* Py3UpdateBases.proto */
jpayne@68 2896 static PyObject* __Pyx_PEP560_update_bases(PyObject *bases);
jpayne@68 2897
jpayne@68 2898 /* CalculateMetaclass.proto */
jpayne@68 2899 static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases);
jpayne@68 2900
jpayne@68 2901 /* SetNameInClass.proto */
jpayne@68 2902 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && PY_VERSION_HEX < 0x030d0000
jpayne@68 2903 #define __Pyx_SetNameInClass(ns, name, value)\
jpayne@68 2904 (likely(PyDict_CheckExact(ns)) ? _PyDict_SetItem_KnownHash(ns, name, value, ((PyASCIIObject *) name)->hash) : PyObject_SetItem(ns, name, value))
jpayne@68 2905 #elif CYTHON_COMPILING_IN_CPYTHON
jpayne@68 2906 #define __Pyx_SetNameInClass(ns, name, value)\
jpayne@68 2907 (likely(PyDict_CheckExact(ns)) ? PyDict_SetItem(ns, name, value) : PyObject_SetItem(ns, name, value))
jpayne@68 2908 #else
jpayne@68 2909 #define __Pyx_SetNameInClass(ns, name, value) PyObject_SetItem(ns, name, value)
jpayne@68 2910 #endif
jpayne@68 2911
jpayne@68 2912 /* PyObjectLookupSpecial.proto */
jpayne@68 2913 #if CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS
jpayne@68 2914 #define __Pyx_PyObject_LookupSpecialNoError(obj, attr_name) __Pyx__PyObject_LookupSpecial(obj, attr_name, 0)
jpayne@68 2915 #define __Pyx_PyObject_LookupSpecial(obj, attr_name) __Pyx__PyObject_LookupSpecial(obj, attr_name, 1)
jpayne@68 2916 static CYTHON_INLINE PyObject* __Pyx__PyObject_LookupSpecial(PyObject* obj, PyObject* attr_name, int with_error);
jpayne@68 2917 #else
jpayne@68 2918 #define __Pyx_PyObject_LookupSpecialNoError(o,n) __Pyx_PyObject_GetAttrStrNoError(o,n)
jpayne@68 2919 #define __Pyx_PyObject_LookupSpecial(o,n) __Pyx_PyObject_GetAttrStr(o,n)
jpayne@68 2920 #endif
jpayne@68 2921
jpayne@68 2922 /* Py3ClassCreate.proto */
jpayne@68 2923 static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name, PyObject *qualname,
jpayne@68 2924 PyObject *mkw, PyObject *modname, PyObject *doc);
jpayne@68 2925 static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases, PyObject *dict,
jpayne@68 2926 PyObject *mkw, int calculate_metaclass, int allow_py2_metaclass);
jpayne@68 2927
jpayne@68 2928 /* CLineInTraceback.proto */
jpayne@68 2929 #ifdef CYTHON_CLINE_IN_TRACEBACK
jpayne@68 2930 #define __Pyx_CLineForTraceback(tstate, c_line) (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0)
jpayne@68 2931 #else
jpayne@68 2932 static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line);
jpayne@68 2933 #endif
jpayne@68 2934
jpayne@68 2935 /* CodeObjectCache.proto */
jpayne@68 2936 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 2937 typedef struct {
jpayne@68 2938 PyCodeObject* code_object;
jpayne@68 2939 int code_line;
jpayne@68 2940 } __Pyx_CodeObjectCacheEntry;
jpayne@68 2941 struct __Pyx_CodeObjectCache {
jpayne@68 2942 int count;
jpayne@68 2943 int max_count;
jpayne@68 2944 __Pyx_CodeObjectCacheEntry* entries;
jpayne@68 2945 };
jpayne@68 2946 static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL};
jpayne@68 2947 static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
jpayne@68 2948 static PyCodeObject *__pyx_find_code_object(int code_line);
jpayne@68 2949 static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);
jpayne@68 2950 #endif
jpayne@68 2951
jpayne@68 2952 /* AddTraceback.proto */
jpayne@68 2953 static void __Pyx_AddTraceback(const char *funcname, int c_line,
jpayne@68 2954 int py_line, const char *filename);
jpayne@68 2955
jpayne@68 2956 /* GCCDiagnostics.proto */
jpayne@68 2957 #if !defined(__INTEL_COMPILER) && defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6))
jpayne@68 2958 #define __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 2959 #endif
jpayne@68 2960
jpayne@68 2961 /* ArrayAPI.proto */
jpayne@68 2962 #ifndef _ARRAYARRAY_H
jpayne@68 2963 #define _ARRAYARRAY_H
jpayne@68 2964 typedef struct arraydescr {
jpayne@68 2965 int typecode;
jpayne@68 2966 int itemsize;
jpayne@68 2967 PyObject * (*getitem)(struct arrayobject *, Py_ssize_t);
jpayne@68 2968 int (*setitem)(struct arrayobject *, Py_ssize_t, PyObject *);
jpayne@68 2969 #if PY_MAJOR_VERSION >= 3
jpayne@68 2970 char *formats;
jpayne@68 2971 #endif
jpayne@68 2972 } arraydescr;
jpayne@68 2973 struct arrayobject {
jpayne@68 2974 PyObject_HEAD
jpayne@68 2975 Py_ssize_t ob_size;
jpayne@68 2976 union {
jpayne@68 2977 char *ob_item;
jpayne@68 2978 float *as_floats;
jpayne@68 2979 double *as_doubles;
jpayne@68 2980 int *as_ints;
jpayne@68 2981 unsigned int *as_uints;
jpayne@68 2982 unsigned char *as_uchars;
jpayne@68 2983 signed char *as_schars;
jpayne@68 2984 char *as_chars;
jpayne@68 2985 unsigned long *as_ulongs;
jpayne@68 2986 long *as_longs;
jpayne@68 2987 #if PY_MAJOR_VERSION >= 3
jpayne@68 2988 unsigned long long *as_ulonglongs;
jpayne@68 2989 long long *as_longlongs;
jpayne@68 2990 #endif
jpayne@68 2991 short *as_shorts;
jpayne@68 2992 unsigned short *as_ushorts;
jpayne@68 2993 Py_UNICODE *as_pyunicodes;
jpayne@68 2994 void *as_voidptr;
jpayne@68 2995 } data;
jpayne@68 2996 Py_ssize_t allocated;
jpayne@68 2997 struct arraydescr *ob_descr;
jpayne@68 2998 PyObject *weakreflist;
jpayne@68 2999 #if PY_MAJOR_VERSION >= 3
jpayne@68 3000 int ob_exports;
jpayne@68 3001 #endif
jpayne@68 3002 };
jpayne@68 3003 #ifndef NO_NEWARRAY_INLINE
jpayne@68 3004 static CYTHON_INLINE PyObject * newarrayobject(PyTypeObject *type, Py_ssize_t size,
jpayne@68 3005 struct arraydescr *descr) {
jpayne@68 3006 arrayobject *op;
jpayne@68 3007 size_t nbytes;
jpayne@68 3008 if (size < 0) {
jpayne@68 3009 PyErr_BadInternalCall();
jpayne@68 3010 return NULL;
jpayne@68 3011 }
jpayne@68 3012 nbytes = size * descr->itemsize;
jpayne@68 3013 if (nbytes / descr->itemsize != (size_t)size) {
jpayne@68 3014 return PyErr_NoMemory();
jpayne@68 3015 }
jpayne@68 3016 op = (arrayobject *) type->tp_alloc(type, 0);
jpayne@68 3017 if (op == NULL) {
jpayne@68 3018 return NULL;
jpayne@68 3019 }
jpayne@68 3020 op->ob_descr = descr;
jpayne@68 3021 op->allocated = size;
jpayne@68 3022 op->weakreflist = NULL;
jpayne@68 3023 __Pyx_SET_SIZE(op, size);
jpayne@68 3024 if (size <= 0) {
jpayne@68 3025 op->data.ob_item = NULL;
jpayne@68 3026 }
jpayne@68 3027 else {
jpayne@68 3028 op->data.ob_item = PyMem_NEW(char, nbytes);
jpayne@68 3029 if (op->data.ob_item == NULL) {
jpayne@68 3030 Py_DECREF(op);
jpayne@68 3031 return PyErr_NoMemory();
jpayne@68 3032 }
jpayne@68 3033 }
jpayne@68 3034 return (PyObject *) op;
jpayne@68 3035 }
jpayne@68 3036 #else
jpayne@68 3037 PyObject* newarrayobject(PyTypeObject *type, Py_ssize_t size,
jpayne@68 3038 struct arraydescr *descr);
jpayne@68 3039 #endif
jpayne@68 3040 static CYTHON_INLINE int resize(arrayobject *self, Py_ssize_t n) {
jpayne@68 3041 void *items = (void*) self->data.ob_item;
jpayne@68 3042 PyMem_Resize(items, char, (size_t)(n * self->ob_descr->itemsize));
jpayne@68 3043 if (items == NULL) {
jpayne@68 3044 PyErr_NoMemory();
jpayne@68 3045 return -1;
jpayne@68 3046 }
jpayne@68 3047 self->data.ob_item = (char*) items;
jpayne@68 3048 __Pyx_SET_SIZE(self, n);
jpayne@68 3049 self->allocated = n;
jpayne@68 3050 return 0;
jpayne@68 3051 }
jpayne@68 3052 static CYTHON_INLINE int resize_smart(arrayobject *self, Py_ssize_t n) {
jpayne@68 3053 void *items = (void*) self->data.ob_item;
jpayne@68 3054 Py_ssize_t newsize;
jpayne@68 3055 if (n < self->allocated && n*4 > self->allocated) {
jpayne@68 3056 __Pyx_SET_SIZE(self, n);
jpayne@68 3057 return 0;
jpayne@68 3058 }
jpayne@68 3059 newsize = n + (n / 2) + 1;
jpayne@68 3060 if (newsize <= n) {
jpayne@68 3061 PyErr_NoMemory();
jpayne@68 3062 return -1;
jpayne@68 3063 }
jpayne@68 3064 PyMem_Resize(items, char, (size_t)(newsize * self->ob_descr->itemsize));
jpayne@68 3065 if (items == NULL) {
jpayne@68 3066 PyErr_NoMemory();
jpayne@68 3067 return -1;
jpayne@68 3068 }
jpayne@68 3069 self->data.ob_item = (char*) items;
jpayne@68 3070 __Pyx_SET_SIZE(self, n);
jpayne@68 3071 self->allocated = newsize;
jpayne@68 3072 return 0;
jpayne@68 3073 }
jpayne@68 3074 #endif
jpayne@68 3075
jpayne@68 3076 /* CIntFromPy.proto */
jpayne@68 3077 static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);
jpayne@68 3078
jpayne@68 3079 /* CIntToPy.proto */
jpayne@68 3080 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);
jpayne@68 3081
jpayne@68 3082 /* CIntFromPy.proto */
jpayne@68 3083 static CYTHON_INLINE uint64_t __Pyx_PyInt_As_uint64_t(PyObject *);
jpayne@68 3084
jpayne@68 3085 /* CIntToPy.proto */
jpayne@68 3086 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_off_t(off_t value);
jpayne@68 3087
jpayne@68 3088 /* CIntToPy.proto */
jpayne@68 3089 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__htsFormatCategory(enum htsFormatCategory value);
jpayne@68 3090
jpayne@68 3091 /* CIntToPy.proto */
jpayne@68 3092 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__htsExactFormat(enum htsExactFormat value);
jpayne@68 3093
jpayne@68 3094 /* CIntToPy.proto */
jpayne@68 3095 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_short(short value);
jpayne@68 3096
jpayne@68 3097 /* CIntToPy.proto */
jpayne@68 3098 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__htsCompression(enum htsCompression value);
jpayne@68 3099
jpayne@68 3100 /* CIntToPy.proto */
jpayne@68 3101 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int64_t(int64_t value);
jpayne@68 3102
jpayne@68 3103 /* CIntFromPy.proto */
jpayne@68 3104 static CYTHON_INLINE int32_t __Pyx_PyInt_As_int32_t(PyObject *);
jpayne@68 3105
jpayne@68 3106 /* CIntToPy.proto */
jpayne@68 3107 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);
jpayne@68 3108
jpayne@68 3109 /* CIntToPy.proto */
jpayne@68 3110 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int32_t(int32_t value);
jpayne@68 3111
jpayne@68 3112 /* FormatTypeName.proto */
jpayne@68 3113 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 3114 typedef PyObject *__Pyx_TypeName;
jpayne@68 3115 #define __Pyx_FMT_TYPENAME "%U"
jpayne@68 3116 static __Pyx_TypeName __Pyx_PyType_GetName(PyTypeObject* tp);
jpayne@68 3117 #define __Pyx_DECREF_TypeName(obj) Py_XDECREF(obj)
jpayne@68 3118 #else
jpayne@68 3119 typedef const char *__Pyx_TypeName;
jpayne@68 3120 #define __Pyx_FMT_TYPENAME "%.200s"
jpayne@68 3121 #define __Pyx_PyType_GetName(tp) ((tp)->tp_name)
jpayne@68 3122 #define __Pyx_DECREF_TypeName(obj)
jpayne@68 3123 #endif
jpayne@68 3124
jpayne@68 3125 /* CIntFromPy.proto */
jpayne@68 3126 static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);
jpayne@68 3127
jpayne@68 3128 /* FastTypeChecks.proto */
jpayne@68 3129 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 3130 #define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type)
jpayne@68 3131 #define __Pyx_TypeCheck2(obj, type1, type2) __Pyx_IsAnySubtype2(Py_TYPE(obj), (PyTypeObject *)type1, (PyTypeObject *)type2)
jpayne@68 3132 static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b);
jpayne@68 3133 static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b);
jpayne@68 3134 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type);
jpayne@68 3135 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2);
jpayne@68 3136 #else
jpayne@68 3137 #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
jpayne@68 3138 #define __Pyx_TypeCheck2(obj, type1, type2) (PyObject_TypeCheck(obj, (PyTypeObject *)type1) || PyObject_TypeCheck(obj, (PyTypeObject *)type2))
jpayne@68 3139 #define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type)
jpayne@68 3140 #define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2))
jpayne@68 3141 #endif
jpayne@68 3142 #define __Pyx_PyErr_ExceptionMatches2(err1, err2) __Pyx_PyErr_GivenExceptionMatches2(__Pyx_PyErr_CurrentExceptionType(), err1, err2)
jpayne@68 3143 #define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception)
jpayne@68 3144
jpayne@68 3145 /* CheckBinaryVersion.proto */
jpayne@68 3146 static unsigned long __Pyx_get_runtime_version(void);
jpayne@68 3147 static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer);
jpayne@68 3148
jpayne@68 3149 /* FunctionImport.proto */
jpayne@68 3150 static int __Pyx_ImportFunction_3_0_11(PyObject *module, const char *funcname, void (**f)(void), const char *sig);
jpayne@68 3151
jpayne@68 3152 /* InitStrings.proto */
jpayne@68 3153 static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);
jpayne@68 3154
jpayne@68 3155 /* #### Code section: module_declarations ### */
jpayne@68 3156 static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4real_real(PyComplexObject *__pyx_v_self); /* proto*/
jpayne@68 3157 static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4imag_imag(PyComplexObject *__pyx_v_self); /* proto*/
jpayne@68 3158 static PyObject *__pyx_f_5pysam_10libchtslib_5HFile__open(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, PyObject *__pyx_v_name, PyObject *__pyx_v_mode, struct __pyx_opt_args_5pysam_10libchtslib_5HFile__open *__pyx_optional_args); /* proto*/
jpayne@68 3159 static htsFile *__pyx_f_5pysam_10libchtslib_7HTSFile__open_htsfile(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto*/
jpayne@68 3160
jpayne@68 3161 /* Module declarations from "libc.stdint" */
jpayne@68 3162
jpayne@68 3163 /* Module declarations from "libc.string" */
jpayne@68 3164
jpayne@68 3165 /* Module declarations from "libc.stdlib" */
jpayne@68 3166
jpayne@68 3167 /* Module declarations from "libc.stdio" */
jpayne@68 3168
jpayne@68 3169 /* Module declarations from "posix.types" */
jpayne@68 3170
jpayne@68 3171 /* Module declarations from "posix.unistd" */
jpayne@68 3172
jpayne@68 3173 /* Module declarations from "libc.errno" */
jpayne@68 3174
jpayne@68 3175 /* Module declarations from "cpython.version" */
jpayne@68 3176
jpayne@68 3177 /* Module declarations from "__builtin__" */
jpayne@68 3178
jpayne@68 3179 /* Module declarations from "cpython.type" */
jpayne@68 3180
jpayne@68 3181 /* Module declarations from "cpython.object" */
jpayne@68 3182
jpayne@68 3183 /* Module declarations from "cpython.ref" */
jpayne@68 3184
jpayne@68 3185 /* Module declarations from "cpython.exc" */
jpayne@68 3186
jpayne@68 3187 /* Module declarations from "cpython.module" */
jpayne@68 3188
jpayne@68 3189 /* Module declarations from "cpython.mem" */
jpayne@68 3190
jpayne@68 3191 /* Module declarations from "cpython.tuple" */
jpayne@68 3192
jpayne@68 3193 /* Module declarations from "cpython.list" */
jpayne@68 3194
jpayne@68 3195 /* Module declarations from "cpython.sequence" */
jpayne@68 3196
jpayne@68 3197 /* Module declarations from "cpython.mapping" */
jpayne@68 3198
jpayne@68 3199 /* Module declarations from "cpython.iterator" */
jpayne@68 3200
jpayne@68 3201 /* Module declarations from "cpython.number" */
jpayne@68 3202
jpayne@68 3203 /* Module declarations from "cpython.int" */
jpayne@68 3204
jpayne@68 3205 /* Module declarations from "__builtin__" */
jpayne@68 3206
jpayne@68 3207 /* Module declarations from "cpython.bool" */
jpayne@68 3208
jpayne@68 3209 /* Module declarations from "cpython.long" */
jpayne@68 3210
jpayne@68 3211 /* Module declarations from "cpython.float" */
jpayne@68 3212
jpayne@68 3213 /* Module declarations from "__builtin__" */
jpayne@68 3214
jpayne@68 3215 /* Module declarations from "cpython.complex" */
jpayne@68 3216
jpayne@68 3217 /* Module declarations from "cpython.string" */
jpayne@68 3218
jpayne@68 3219 /* Module declarations from "libc.stddef" */
jpayne@68 3220
jpayne@68 3221 /* Module declarations from "cpython.unicode" */
jpayne@68 3222
jpayne@68 3223 /* Module declarations from "cpython.pyport" */
jpayne@68 3224
jpayne@68 3225 /* Module declarations from "cpython.dict" */
jpayne@68 3226
jpayne@68 3227 /* Module declarations from "cpython.instance" */
jpayne@68 3228
jpayne@68 3229 /* Module declarations from "cpython.function" */
jpayne@68 3230
jpayne@68 3231 /* Module declarations from "cpython.method" */
jpayne@68 3232
jpayne@68 3233 /* Module declarations from "cpython.weakref" */
jpayne@68 3234
jpayne@68 3235 /* Module declarations from "cpython.getargs" */
jpayne@68 3236
jpayne@68 3237 /* Module declarations from "cpython.pythread" */
jpayne@68 3238
jpayne@68 3239 /* Module declarations from "cpython.pystate" */
jpayne@68 3240
jpayne@68 3241 /* Module declarations from "cpython.cobject" */
jpayne@68 3242
jpayne@68 3243 /* Module declarations from "cpython.oldbuffer" */
jpayne@68 3244
jpayne@68 3245 /* Module declarations from "cpython.set" */
jpayne@68 3246
jpayne@68 3247 /* Module declarations from "cpython.buffer" */
jpayne@68 3248
jpayne@68 3249 /* Module declarations from "cpython.bytes" */
jpayne@68 3250
jpayne@68 3251 /* Module declarations from "cpython.pycapsule" */
jpayne@68 3252
jpayne@68 3253 /* Module declarations from "cpython.contextvars" */
jpayne@68 3254
jpayne@68 3255 /* Module declarations from "cpython" */
jpayne@68 3256
jpayne@68 3257 /* Module declarations from "cython" */
jpayne@68 3258
jpayne@68 3259 /* Module declarations from "array" */
jpayne@68 3260
jpayne@68 3261 /* Module declarations from "cpython.array" */
jpayne@68 3262 static CYTHON_INLINE int __pyx_f_7cpython_5array_extend_buffer(arrayobject *, char *, Py_ssize_t); /*proto*/
jpayne@68 3263
jpayne@68 3264 /* Module declarations from "pysam.libcutils" */
jpayne@68 3265 static int (*__pyx_f_5pysam_9libcutils_libc_whence_from_io)(int); /*proto*/
jpayne@68 3266 static PyObject *(*__pyx_f_5pysam_9libcutils_charptr_to_str)(char const *, struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str *__pyx_optional_args); /*proto*/
jpayne@68 3267 static PyObject *(*__pyx_f_5pysam_9libcutils_charptr_to_str_w_len)(char const *, size_t, struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str_w_len *__pyx_optional_args); /*proto*/
jpayne@68 3268 static PyObject *(*__pyx_f_5pysam_9libcutils_force_str)(PyObject *, struct __pyx_opt_args_5pysam_9libcutils_force_str *__pyx_optional_args); /*proto*/
jpayne@68 3269 static PyObject *(*__pyx_f_5pysam_9libcutils_force_bytes)(PyObject *, struct __pyx_opt_args_5pysam_9libcutils_force_bytes *__pyx_optional_args); /*proto*/
jpayne@68 3270 static PyObject *(*__pyx_f_5pysam_9libcutils_encode_filename)(PyObject *); /*proto*/
jpayne@68 3271 static PyObject *(*__pyx_f_5pysam_9libcutils_from_string_and_size)(char const *, size_t); /*proto*/
jpayne@68 3272
jpayne@68 3273 /* Module declarations from "pysam.libchtslib" */
jpayne@68 3274 static int __pyx_v_5pysam_10libchtslib_MAX_POS;
jpayne@68 3275 static PyObject *__pyx_v_5pysam_10libchtslib_FORMAT_CATEGORIES = 0;
jpayne@68 3276 static PyObject *__pyx_v_5pysam_10libchtslib_FORMATS = 0;
jpayne@68 3277 static PyObject *__pyx_v_5pysam_10libchtslib_COMPRESSION = 0;
jpayne@68 3278 static PyObject *__pyx_f_5pysam_10libchtslib_set_verbosity(int, int __pyx_skip_dispatch); /*proto*/
jpayne@68 3279 static PyObject *__pyx_f_5pysam_10libchtslib_get_verbosity(int __pyx_skip_dispatch); /*proto*/
jpayne@68 3280 /* #### Code section: typeinfo ### */
jpayne@68 3281 /* #### Code section: before_global_var ### */
jpayne@68 3282 #define __Pyx_MODULE_NAME "pysam.libchtslib"
jpayne@68 3283 extern int __pyx_module_is_main_pysam__libchtslib;
jpayne@68 3284 int __pyx_module_is_main_pysam__libchtslib = 0;
jpayne@68 3285
jpayne@68 3286 /* Implementation of "pysam.libchtslib" */
jpayne@68 3287 /* #### Code section: global_var ### */
jpayne@68 3288 static PyObject *__pyx_builtin_object;
jpayne@68 3289 static PyObject *__pyx_builtin_IOError;
jpayne@68 3290 static PyObject *__pyx_builtin_AttributeError;
jpayne@68 3291 static PyObject *__pyx_builtin_StopIteration;
jpayne@68 3292 static PyObject *__pyx_builtin_NotImplementedError;
jpayne@68 3293 static PyObject *__pyx_builtin_TypeError;
jpayne@68 3294 static PyObject *__pyx_builtin_OSError;
jpayne@68 3295 static PyObject *__pyx_builtin_ValueError;
jpayne@68 3296 static PyObject *__pyx_builtin_RuntimeError;
jpayne@68 3297 static PyObject *__pyx_builtin_OverflowError;
jpayne@68 3298 static PyObject *__pyx_builtin_IndexError;
jpayne@68 3299 static PyObject *__pyx_builtin_MemoryError;
jpayne@68 3300 /* #### Code section: string_decls ### */
jpayne@68 3301 static const char __pyx_k_b[] = "b";
jpayne@68 3302 static const char __pyx_k_c[] = "c";
jpayne@68 3303 static const char __pyx_k_r[] = "r";
jpayne@68 3304 static const char __pyx_k_w[] = "w";
jpayne@68 3305 static const char __pyx_k_eq[] = "__eq__";
jpayne@68 3306 static const char __pyx_k_fd[] = "<fd:{}>";
jpayne@68 3307 static const char __pyx_k_fp[] = "fp";
jpayne@68 3308 static const char __pyx_k_gc[] = "gc";
jpayne@68 3309 static const char __pyx_k_io[] = "io";
jpayne@68 3310 static const char __pyx_k_mv[] = "mv";
jpayne@68 3311 static const char __pyx_k_ne[] = "__ne__";
jpayne@68 3312 static const char __pyx_k_os[] = "os";
jpayne@68 3313 static const char __pyx_k_re[] = "re";
jpayne@68 3314 static const char __pyx_k_tb[] = "tb";
jpayne@68 3315 static const char __pyx_k_BAI[] = "BAI";
jpayne@68 3316 static const char __pyx_k_BAM[] = "BAM";
jpayne@68 3317 static const char __pyx_k_BCF[] = "BCF";
jpayne@68 3318 static const char __pyx_k_BED[] = "BED";
jpayne@68 3319 static const char __pyx_k_CSI[] = "CSI";
jpayne@68 3320 static const char __pyx_k_GZI[] = "GZI";
jpayne@68 3321 static const char __pyx_k_SAM[] = "SAM";
jpayne@68 3322 static const char __pyx_k_TBI[] = "TBI";
jpayne@68 3323 static const char __pyx_k_VCF[] = "VCF";
jpayne@68 3324 static const char __pyx_k__13[] = "";
jpayne@68 3325 static const char __pyx_k__55[] = ":";
jpayne@68 3326 static const char __pyx_k__56[] = "-";
jpayne@68 3327 static const char __pyx_k__58[] = "*";
jpayne@68 3328 static const char __pyx_k__59[] = ".";
jpayne@68 3329 static const char __pyx_k__97[] = "?";
jpayne@68 3330 static const char __pyx_k_all[] = "__all__";
jpayne@68 3331 static const char __pyx_k_buf[] = "buf";
jpayne@68 3332 static const char __pyx_k_doc[] = "__doc__";
jpayne@68 3333 static const char __pyx_k_end[] = "end";
jpayne@68 3334 static const char __pyx_k_got[] = "got";
jpayne@68 3335 static const char __pyx_k_msg[] = "msg";
jpayne@68 3336 static const char __pyx_k_off[] = "off";
jpayne@68 3337 static const char __pyx_k_ret[] = "ret";
jpayne@68 3338 static const char __pyx_k_tid[] = "tid";
jpayne@68 3339 static const char __pyx_k_BGZF[] = "BGZF";
jpayne@68 3340 static const char __pyx_k_CRAI[] = "CRAI";
jpayne@68 3341 static const char __pyx_k_CRAM[] = "CRAM";
jpayne@68 3342 static const char __pyx_k_GZIP[] = "GZIP";
jpayne@68 3343 static const char __pyx_k_NONE[] = "NONE";
jpayne@68 3344 static const char __pyx_k_bool[] = "__bool__";
jpayne@68 3345 static const char __pyx_k_call[] = "__call__";
jpayne@68 3346 static const char __pyx_k_dict[] = "__dict__";
jpayne@68 3347 static const char __pyx_k_exit[] = "__exit__";
jpayne@68 3348 static const char __pyx_k_init[] = "__init__";
jpayne@68 3349 static const char __pyx_k_join[] = "join";
jpayne@68 3350 static const char __pyx_k_line[] = "line";
jpayne@68 3351 static const char __pyx_k_main[] = "__main__";
jpayne@68 3352 static const char __pyx_k_mode[] = "mode";
jpayne@68 3353 static const char __pyx_k_name[] = "name";
jpayne@68 3354 static const char __pyx_k_opts[] = "opts";
jpayne@68 3355 static const char __pyx_k_part[] = "part";
jpayne@68 3356 static const char __pyx_k_read[] = "read";
jpayne@68 3357 static const char __pyx_k_rtid[] = "rtid";
jpayne@68 3358 static const char __pyx_k_rval[] = "rval";
jpayne@68 3359 static const char __pyx_k_seek[] = "seek";
jpayne@68 3360 static const char __pyx_k_self[] = "self";
jpayne@68 3361 static const char __pyx_k_size[] = "size";
jpayne@68 3362 static const char __pyx_k_spec[] = "__spec__";
jpayne@68 3363 static const char __pyx_k_stop[] = "stop";
jpayne@68 3364 static const char __pyx_k_tell[] = "tell";
jpayne@68 3365 static const char __pyx_k_test[] = "__test__";
jpayne@68 3366 static const char __pyx_k_type[] = "type";
jpayne@68 3367 static const char __pyx_k_warn[] = "warn";
jpayne@68 3368 static const char __pyx_k_CTrue[] = "CTrue";
jpayne@68 3369 static const char __pyx_k_HFile[] = "HFile";
jpayne@68 3370 static const char __pyx_k_INDEX[] = "INDEX";
jpayne@68 3371 static const char __pyx_k_bgzfp[] = "bgzfp";
jpayne@68 3372 static const char __pyx_k_close[] = "close";
jpayne@68 3373 static const char __pyx_k_coord[] = "coord";
jpayne@68 3374 static const char __pyx_k_cpart[] = "cpart";
jpayne@68 3375 static const char __pyx_k_enter[] = "__enter__";
jpayne@68 3376 static const char __pyx_k_flush[] = "flush";
jpayne@68 3377 static const char __pyx_k_lines[] = "lines";
jpayne@68 3378 static const char __pyx_k_other[] = "other";
jpayne@68 3379 static const char __pyx_k_parts[] = "parts";
jpayne@68 3380 static const char __pyx_k_reset[] = "reset";
jpayne@68 3381 static const char __pyx_k_rstop[] = "rstop";
jpayne@68 3382 static const char __pyx_k_split[] = "split";
jpayne@68 3383 static const char __pyx_k_start[] = "start";
jpayne@68 3384 static const char __pyx_k_super[] = "super";
jpayne@68 3385 static const char __pyx_k_value[] = "value";
jpayne@68 3386 static const char __pyx_k_write[] = "write";
jpayne@68 3387 static const char __pyx_k_CFalse[] = "CFalse";
jpayne@68 3388 static const char __pyx_k_CUSTOM[] = "CUSTOM";
jpayne@68 3389 static const char __pyx_k_contig[] = "contig";
jpayne@68 3390 static const char __pyx_k_enable[] = "enable";
jpayne@68 3391 static const char __pyx_k_failed[] = " failed";
jpayne@68 3392 static const char __pyx_k_fileno[] = "fileno";
jpayne@68 3393 static const char __pyx_k_format[] = "format";
jpayne@68 3394 static const char __pyx_k_import[] = "__import__";
jpayne@68 3395 static const char __pyx_k_isatty[] = "isatty";
jpayne@68 3396 static const char __pyx_k_module[] = "__module__";
jpayne@68 3397 static const char __pyx_k_name_2[] = "__name__";
jpayne@68 3398 static const char __pyx_k_object[] = "object";
jpayne@68 3399 static const char __pyx_k_offset[] = "offset";
jpayne@68 3400 static const char __pyx_k_reduce[] = "__reduce__";
jpayne@68 3401 static const char __pyx_k_region[] = "region";
jpayne@68 3402 static const char __pyx_k_rstart[] = "rstart";
jpayne@68 3403 static const char __pyx_k_whence[] = "whence";
jpayne@68 3404 static const char __pyx_k_HTSFile[] = "HTSFile";
jpayne@68 3405 static const char __pyx_k_IOError[] = "IOError";
jpayne@68 3406 static const char __pyx_k_OSError[] = "OSError";
jpayne@68 3407 static const char __pyx_k_REGIONS[] = "REGIONS";
jpayne@68 3408 static const char __pyx_k_UNKNOWN[] = "UNKNOWN";
jpayne@68 3409 static const char __pyx_k_closefd[] = "closefd";
jpayne@68 3410 static const char __pyx_k_disable[] = "disable";
jpayne@68 3411 static const char __pyx_k_get_tid[] = "get_tid";
jpayne@68 3412 static const char __pyx_k_is_open[] = "is_open";
jpayne@68 3413 static const char __pyx_k_nonzero[] = "__nonzero__";
jpayne@68 3414 static const char __pyx_k_prepare[] = "__prepare__";
jpayne@68 3415 static const char __pyx_k_readall[] = "readall";
jpayne@68 3416 static const char __pyx_k_replace[] = "replace";
jpayne@68 3417 static const char __pyx_k_Flushing[] = "Flushing ";
jpayne@68 3418 static const char __pyx_k_SEEK_SET[] = "SEEK_SET";
jpayne@68 3419 static const char __pyx_k_VARIANTS[] = "VARIANTS";
jpayne@68 3420 static const char __pyx_k_exc_type[] = "exc_type";
jpayne@68 3421 static const char __pyx_k_getstate[] = "__getstate__";
jpayne@68 3422 static const char __pyx_k_qualname[] = "__qualname__";
jpayne@68 3423 static const char __pyx_k_readable[] = "readable";
jpayne@68 3424 static const char __pyx_k_readinto[] = "readinto";
jpayne@68 3425 static const char __pyx_k_readline[] = "readline";
jpayne@68 3426 static const char __pyx_k_seekable[] = "seekable";
jpayne@68 3427 static const char __pyx_k_set_name[] = "__set_name__";
jpayne@68 3428 static const char __pyx_k_setstate[] = "__setstate__";
jpayne@68 3429 static const char __pyx_k_truncate[] = "truncate";
jpayne@68 3430 static const char __pyx_k_warnings[] = "warnings";
jpayne@68 3431 static const char __pyx_k_writable[] = "writable";
jpayne@68 3432 static const char __pyx_k_TypeError[] = "TypeError";
jpayne@68 3433 static const char __pyx_k_exc_value[] = "exc_value";
jpayne@68 3434 static const char __pyx_k_isenabled[] = "isenabled";
jpayne@68 3435 static const char __pyx_k_metaclass[] = "__metaclass__";
jpayne@68 3436 static const char __pyx_k_pyx_state[] = "__pyx_state";
jpayne@68 3437 static const char __pyx_k_readlines[] = "readlines";
jpayne@68 3438 static const char __pyx_k_reduce_ex[] = "__reduce_ex__";
jpayne@68 3439 static const char __pyx_k_reference[] = "reference";
jpayne@68 3440 static const char __pyx_k_traceback[] = "traceback";
jpayne@68 3441 static const char __pyx_k_verbosity[] = "verbosity";
jpayne@68 3442 static const char __pyx_k_ALIGNMENTS[] = "ALIGNMENTS";
jpayne@68 3443 static const char __pyx_k_HFile_read[] = "HFile.read";
jpayne@68 3444 static const char __pyx_k_HFile_seek[] = "HFile.seek";
jpayne@68 3445 static const char __pyx_k_HFile_tell[] = "HFile.tell";
jpayne@68 3446 static const char __pyx_k_IndexError[] = "IndexError";
jpayne@68 3447 static const char __pyx_k_ValueError[] = "ValueError";
jpayne@68 3448 static const char __pyx_k_bytes_read[] = "bytes_read";
jpayne@68 3449 static const char __pyx_k_chunk_size[] = "chunk_size";
jpayne@68 3450 static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__";
jpayne@68 3451 static const char __pyx_k_writelines[] = "writelines";
jpayne@68 3452 static const char __pyx_k_HFile_close[] = "HFile.close";
jpayne@68 3453 static const char __pyx_k_HFile_flush[] = "HFile.flush";
jpayne@68 3454 static const char __pyx_k_HFile_write[] = "HFile.write";
jpayne@68 3455 static const char __pyx_k_MemoryError[] = "MemoryError";
jpayne@68 3456 static const char __pyx_k_TEXT_FORMAT[] = "TEXT_FORMAT";
jpayne@68 3457 static const char __pyx_k_invalid_tid[] = "invalid tid";
jpayne@68 3458 static const char __pyx_k_mro_entries[] = "__mro_entries__";
jpayne@68 3459 static const char __pyx_k_HFile___exit[] = "HFile.__exit__";
jpayne@68 3460 static const char __pyx_k_HFile_fileno[] = "HFile.fileno";
jpayne@68 3461 static const char __pyx_k_HFile_isatty[] = "HFile.isatty";
jpayne@68 3462 static const char __pyx_k_HTSFile_seek[] = "HTSFile.seek";
jpayne@68 3463 static const char __pyx_k_HTSFile_tell[] = "HTSFile.tell";
jpayne@68 3464 static const char __pyx_k_RuntimeError[] = "RuntimeError";
jpayne@68 3465 static const char __pyx_k_initializing[] = "_initializing";
jpayne@68 3466 static const char __pyx_k_is_coroutine[] = "_is_coroutine";
jpayne@68 3467 static const char __pyx_k_is_valid_tid[] = "is_valid_tid";
jpayne@68 3468 static const char __pyx_k_parse_region[] = "parse_region";
jpayne@68 3469 static const char __pyx_k_stringsource[] = "<stringsource>";
jpayne@68 3470 static const char __pyx_k_BINARY_FORMAT[] = "BINARY_FORMAT";
jpayne@68 3471 static const char __pyx_k_CallableValue[] = "CallableValue";
jpayne@68 3472 static const char __pyx_k_HFile___enter[] = "HFile.__enter__";
jpayne@68 3473 static const char __pyx_k_HFile_readall[] = "HFile.readall";
jpayne@68 3474 static const char __pyx_k_HTSFile_close[] = "HTSFile.close";
jpayne@68 3475 static const char __pyx_k_HTSFile_flush[] = "HTSFile.flush";
jpayne@68 3476 static const char __pyx_k_HTSFile_reset[] = "HTSFile.reset";
jpayne@68 3477 static const char __pyx_k_OverflowError[] = "OverflowError";
jpayne@68 3478 static const char __pyx_k_StopIteration[] = "StopIteration";
jpayne@68 3479 static const char __pyx_k_class_getitem[] = "__class_getitem__";
jpayne@68 3480 static const char __pyx_k_format_option[] = "format_option";
jpayne@68 3481 static const char __pyx_k_get_verbosity[] = "get_verbosity";
jpayne@68 3482 static const char __pyx_k_init_subclass[] = "__init_subclass__";
jpayne@68 3483 static const char __pyx_k_reduce_cython[] = "__reduce_cython__";
jpayne@68 3484 static const char __pyx_k_set_verbosity[] = "set_verbosity";
jpayne@68 3485 static const char __pyx_k_AttributeError[] = "AttributeError";
jpayne@68 3486 static const char __pyx_k_HFile_readable[] = "HFile.readable";
jpayne@68 3487 static const char __pyx_k_HFile_readinto[] = "HFile.readinto";
jpayne@68 3488 static const char __pyx_k_HFile_readline[] = "HFile.readline";
jpayne@68 3489 static const char __pyx_k_HFile_seekable[] = "HFile.seekable";
jpayne@68 3490 static const char __pyx_k_HFile_truncate[] = "HFile.truncate";
jpayne@68 3491 static const char __pyx_k_HFile_writable[] = "HFile.writable";
jpayne@68 3492 static const char __pyx_k_HTSFile___exit[] = "HTSFile.__exit__";
jpayne@68 3493 static const char __pyx_k_format_options[] = "format_options";
jpayne@68 3494 static const char __pyx_k_HFile_readlines[] = "HFile.readlines";
jpayne@68 3495 static const char __pyx_k_HTSFile___enter[] = "HTSFile.__enter__";
jpayne@68 3496 static const char __pyx_k_HTSFile_get_tid[] = "HTSFile.get_tid";
jpayne@68 3497 static const char __pyx_k_add_hts_options[] = "add_hts_options";
jpayne@68 3498 static const char __pyx_k_setstate_cython[] = "__setstate_cython__";
jpayne@68 3499 static const char __pyx_k_HFile_writelines[] = "HFile.writelines";
jpayne@68 3500 static const char __pyx_k_check_truncation[] = "check_truncation";
jpayne@68 3501 static const char __pyx_k_invalid_contig_s[] = "invalid contig `%s`";
jpayne@68 3502 static const char __pyx_k_pysam_libchtslib[] = "pysam.libchtslib";
jpayne@68 3503 static const char __pyx_k_ignore_truncation[] = "ignore_truncation";
jpayne@68 3504 static const char __pyx_k_CallableValue___eq[] = "CallableValue.__eq__";
jpayne@68 3505 static const char __pyx_k_CallableValue___ne[] = "CallableValue.__ne__";
jpayne@68 3506 static const char __pyx_k_asyncio_coroutines[] = "asyncio.coroutines";
jpayne@68 3507 static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback";
jpayne@68 3508 static const char __pyx_k_get_reference_name[] = "get_reference_name";
jpayne@68 3509 static const char __pyx_k_Cannot_create_hfile[] = "Cannot create hfile";
jpayne@68 3510 static const char __pyx_k_NotImplementedError[] = "NotImplementedError";
jpayne@68 3511 static const char __pyx_k_stop_out_of_range_i[] = "stop out of range (%i)";
jpayne@68 3512 static const char __pyx_k_CallableValue___bool[] = "CallableValue.__bool__";
jpayne@68 3513 static const char __pyx_k_CallableValue___call[] = "CallableValue.__call__";
jpayne@68 3514 static const char __pyx_k_CallableValue___init[] = "CallableValue.__init__";
jpayne@68 3515 static const char __pyx_k_HTSFile_is_valid_tid[] = "HTSFile.is_valid_tid";
jpayne@68 3516 static const char __pyx_k_HTSFile_parse_region[] = "HTSFile.parse_region";
jpayne@68 3517 static const char __pyx_k_failed_to_open_HFile[] = "failed to open HFile";
jpayne@68 3518 static const char __pyx_k_failed_to_read_HFile[] = "failed to read HFile";
jpayne@68 3519 static const char __pyx_k_fileno_not_available[] = "fileno not available";
jpayne@68 3520 static const char __pyx_k_pysam_libchtslib_pyx[] = "pysam/libchtslib.pyx";
jpayne@68 3521 static const char __pyx_k_seek_failed_on_HFile[] = "seek failed on HFile";
jpayne@68 3522 static const char __pyx_k_start_out_of_range_i[] = "start out of range (%i)";
jpayne@68 3523 static const char __pyx_k_tell_failed_on_HFile[] = "tell failed on HFile";
jpayne@68 3524 static const char __pyx_k_HFile___reduce_cython[] = "HFile.__reduce_cython__";
jpayne@68 3525 static const char __pyx_k_failed_to_close_HFile[] = "failed to close HFile";
jpayne@68 3526 static const char __pyx_k_failed_to_flush_HFile[] = "failed to flush HFile";
jpayne@68 3527 static const char __pyx_k_write_failed_on_HFile[] = "write failed on HFile";
jpayne@68 3528 static const char __pyx_k_CallableValue___nonzero[] = "CallableValue.__nonzero__";
jpayne@68 3529 static const char __pyx_k_HFile___setstate_cython[] = "HFile.__setstate_cython__";
jpayne@68 3530 static const char __pyx_k_HTSFile___reduce_cython[] = "HTSFile.__reduce_cython__";
jpayne@68 3531 static const char __pyx_k_HTSFile_add_hts_options[] = "HTSFile.add_hts_options";
jpayne@68 3532 static const char __pyx_k_is_valid_reference_name[] = "is_valid_reference_name";
jpayne@68 3533 static const char __pyx_k_HTSFile_check_truncation[] = "HTSFile.check_truncation";
jpayne@68 3534 static const char __pyx_k_HTSFile___setstate_cython[] = "HTSFile.__setstate_cython__";
jpayne@68 3535 static const char __pyx_k_operation_on_closed_HFile[] = "operation on closed HFile";
jpayne@68 3536 static const char __pyx_k_HTSFile_get_reference_name[] = "HTSFile.get_reference_name";
jpayne@68 3537 static const char __pyx_k_I_O_operation_on_closed_file[] = "I/O operation on closed file";
jpayne@68 3538 static const char __pyx_k_error_checking_for_EOF_marker[] = "error checking for EOF marker";
jpayne@68 3539 static const char __pyx_k_seek_not_available_in_streams[] = "seek not available in streams";
jpayne@68 3540 static const char __pyx_k_tell_not_available_in_streams[] = "tell not available in streams";
jpayne@68 3541 static const char __pyx_k_HTSFile_is_valid_reference_name[] = "HTSFile.is_valid_reference_name";
jpayne@68 3542 static const char __pyx_k_Invalid_format_option_specified[] = "Invalid format option ({}) specified";
jpayne@68 3543 static const char __pyx_k_contig_and_reference_should_not[] = "contig and reference should not both be specified";
jpayne@68 3544 static const char __pyx_k_stop_and_end_should_not_both_be[] = "stop and end should not both be specified";
jpayne@68 3545 static const char __pyx_k_An_error_occurred_while_applying[] = "An error occurred while applying the requested format options";
jpayne@68 3546 static const char __pyx_k_invalid_coordinates_start_i_stop[] = "invalid coordinates: start (%i) > stop (%i)";
jpayne@68 3547 static const char __pyx_k_metadata_not_available_on_closed[] = "metadata not available on closed file";
jpayne@68 3548 static const char __pyx_k_no_BGZF_EOF_marker_file_may_be_t[] = "no BGZF EOF marker; file may be truncated";
jpayne@68 3549 static const char __pyx_k_no_default___reduce___due_to_non[] = "no default __reduce__ due to non-trivial __cinit__";
jpayne@68 3550 static const char __pyx_k_seek_not_implemented_in_files_co[] = "seek not implemented in files compressed by method {}";
jpayne@68 3551 static const char __pyx_k_self_fp_cannot_be_converted_to_a[] = "self.fp cannot be converted to a Python object for pickling";
jpayne@68 3552 /* #### Code section: decls ### */
jpayne@68 3553 static int __pyx_pf_7cpython_5array_5array___getbuffer__(arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info, CYTHON_UNUSED int __pyx_v_flags); /* proto */
jpayne@68 3554 static void __pyx_pf_7cpython_5array_5array_2__releasebuffer__(CYTHON_UNUSED arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */
jpayne@68 3555 static PyObject *__pyx_pf_5pysam_10libchtslib_set_verbosity(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_verbosity); /* proto */
jpayne@68 3556 static PyObject *__pyx_pf_5pysam_10libchtslib_2get_verbosity(CYTHON_UNUSED PyObject *__pyx_self); /* proto */
jpayne@68 3557 static int __pyx_pf_5pysam_10libchtslib_5HFile___init__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, PyObject *__pyx_v_name, PyObject *__pyx_v_mode, CYTHON_UNUSED PyObject *__pyx_v_closefd); /* proto */
jpayne@68 3558 static void __pyx_pf_5pysam_10libchtslib_5HFile_2__dealloc__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3559 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_6closed___get__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3560 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_4close(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3561 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_6fileno(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3562 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_8__enter__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3563 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_10__exit__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_type, CYTHON_UNUSED PyObject *__pyx_v_value, CYTHON_UNUSED PyObject *__pyx_v_tb); /* proto */
jpayne@68 3564 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_12__iter__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3565 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_14__next__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3566 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_16flush(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3567 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_18isatty(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3568 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_20readable(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3569 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_22read(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, Py_ssize_t __pyx_v_size); /* proto */
jpayne@68 3570 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_24readall(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3571 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_26readinto(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, PyObject *__pyx_v_buf); /* proto */
jpayne@68 3572 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_28readline(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, Py_ssize_t __pyx_v_size); /* proto */
jpayne@68 3573 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_30readlines(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3574 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_32seek(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, Py_ssize_t __pyx_v_offset, int __pyx_v_whence); /* proto */
jpayne@68 3575 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_34tell(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3576 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_36seekable(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3577 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_38truncate(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_size); /* proto */
jpayne@68 3578 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_40writable(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3579 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_42write(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, PyObject *__pyx_v_b); /* proto */
jpayne@68 3580 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_44writelines(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, PyObject *__pyx_v_lines); /* proto */
jpayne@68 3581 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_4name___get__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3582 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_4mode___get__(struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3583 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_46__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self); /* proto */
jpayne@68 3584 static PyObject *__pyx_pf_5pysam_10libchtslib_5HFile_48__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
jpayne@68 3585 static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
jpayne@68 3586 static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue_2__call__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
jpayne@68 3587 static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue_4__bool__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
jpayne@68 3588 static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue_6__nonzero__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
jpayne@68 3589 static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue_8__eq__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
jpayne@68 3590 static PyObject *__pyx_pf_5pysam_10libchtslib_13CallableValue_10__ne__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_other); /* proto */
jpayne@68 3591 static int __pyx_pf_5pysam_10libchtslib_7HTSFile___cinit__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */
jpayne@68 3592 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_2close(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3593 static void __pyx_pf_5pysam_10libchtslib_7HTSFile_4__dealloc__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3594 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6flush(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3595 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_8check_truncation(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, PyObject *__pyx_v_ignore_truncation); /* proto */
jpayne@68 3596 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_10__enter__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3597 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_12__exit__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_exc_type, CYTHON_UNUSED PyObject *__pyx_v_exc_value, CYTHON_UNUSED PyObject *__pyx_v_traceback); /* proto */
jpayne@68 3598 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_8category___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3599 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6format___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3600 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_7version___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3601 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_11compression___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3602 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_11description___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3603 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_7is_open___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3604 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_9is_closed___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3605 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6closed___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3606 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_8is_write___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3607 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_7is_read___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3608 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6is_sam___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3609 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6is_bam___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3610 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_7is_cram___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3611 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6is_vcf___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3612 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_6is_bcf___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3613 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_14reset(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3614 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_16seek(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, uint64_t __pyx_v_offset, int __pyx_v_whence); /* proto */
jpayne@68 3615 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_18tell(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3616 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_20add_hts_options(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, PyObject *__pyx_v_format_options); /* proto */
jpayne@68 3617 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_22parse_region(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, PyObject *__pyx_v_contig, PyObject *__pyx_v_start, PyObject *__pyx_v_stop, PyObject *__pyx_v_region, PyObject *__pyx_v_tid, PyObject *__pyx_v_reference, PyObject *__pyx_v_end); /* proto */
jpayne@68 3618 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_24is_valid_tid(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_tid); /* proto */
jpayne@68 3619 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_26is_valid_reference_name(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, PyObject *__pyx_v_contig); /* proto */
jpayne@68 3620 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_28get_tid(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_contig); /* proto */
jpayne@68 3621 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_30get_reference_name(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_tid); /* proto */
jpayne@68 3622 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_8filename___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3623 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_4mode___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3624 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_7threads___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3625 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_14index_filename___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3626 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_9is_stream___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3627 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_9is_remote___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3628 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_20duplicate_filehandle___get__(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3629 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_32__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self); /* proto */
jpayne@68 3630 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_34__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
jpayne@68 3631 static PyObject *__pyx_tp_new_5pysam_10libchtslib_HTSFile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
jpayne@68 3632 static PyObject *__pyx_tp_new_5pysam_10libchtslib_HFile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
jpayne@68 3633 /* #### Code section: late_includes ### */
jpayne@68 3634 /* #### Code section: module_state ### */
jpayne@68 3635 typedef struct {
jpayne@68 3636 PyObject *__pyx_d;
jpayne@68 3637 PyObject *__pyx_b;
jpayne@68 3638 PyObject *__pyx_cython_runtime;
jpayne@68 3639 PyObject *__pyx_empty_tuple;
jpayne@68 3640 PyObject *__pyx_empty_bytes;
jpayne@68 3641 PyObject *__pyx_empty_unicode;
jpayne@68 3642 #ifdef __Pyx_CyFunction_USED
jpayne@68 3643 PyTypeObject *__pyx_CyFunctionType;
jpayne@68 3644 #endif
jpayne@68 3645 #ifdef __Pyx_FusedFunction_USED
jpayne@68 3646 PyTypeObject *__pyx_FusedFunctionType;
jpayne@68 3647 #endif
jpayne@68 3648 #ifdef __Pyx_Generator_USED
jpayne@68 3649 PyTypeObject *__pyx_GeneratorType;
jpayne@68 3650 #endif
jpayne@68 3651 #ifdef __Pyx_IterableCoroutine_USED
jpayne@68 3652 PyTypeObject *__pyx_IterableCoroutineType;
jpayne@68 3653 #endif
jpayne@68 3654 #ifdef __Pyx_Coroutine_USED
jpayne@68 3655 PyTypeObject *__pyx_CoroutineAwaitType;
jpayne@68 3656 #endif
jpayne@68 3657 #ifdef __Pyx_Coroutine_USED
jpayne@68 3658 PyTypeObject *__pyx_CoroutineType;
jpayne@68 3659 #endif
jpayne@68 3660 #if CYTHON_USE_MODULE_STATE
jpayne@68 3661 #endif
jpayne@68 3662 #if CYTHON_USE_MODULE_STATE
jpayne@68 3663 #endif
jpayne@68 3664 #if CYTHON_USE_MODULE_STATE
jpayne@68 3665 #endif
jpayne@68 3666 #if CYTHON_USE_MODULE_STATE
jpayne@68 3667 #endif
jpayne@68 3668 #if CYTHON_USE_MODULE_STATE
jpayne@68 3669 #endif
jpayne@68 3670 #if CYTHON_USE_MODULE_STATE
jpayne@68 3671 #endif
jpayne@68 3672 #if CYTHON_USE_MODULE_STATE
jpayne@68 3673 #endif
jpayne@68 3674 #if CYTHON_USE_MODULE_STATE
jpayne@68 3675 #endif
jpayne@68 3676 #if CYTHON_USE_MODULE_STATE
jpayne@68 3677 #endif
jpayne@68 3678 #if CYTHON_USE_MODULE_STATE
jpayne@68 3679 #endif
jpayne@68 3680 PyTypeObject *__pyx_ptype_7cpython_4type_type;
jpayne@68 3681 #if CYTHON_USE_MODULE_STATE
jpayne@68 3682 #endif
jpayne@68 3683 #if CYTHON_USE_MODULE_STATE
jpayne@68 3684 #endif
jpayne@68 3685 #if CYTHON_USE_MODULE_STATE
jpayne@68 3686 #endif
jpayne@68 3687 #if CYTHON_USE_MODULE_STATE
jpayne@68 3688 #endif
jpayne@68 3689 #if CYTHON_USE_MODULE_STATE
jpayne@68 3690 #endif
jpayne@68 3691 #if CYTHON_USE_MODULE_STATE
jpayne@68 3692 #endif
jpayne@68 3693 #if CYTHON_USE_MODULE_STATE
jpayne@68 3694 #endif
jpayne@68 3695 #if CYTHON_USE_MODULE_STATE
jpayne@68 3696 #endif
jpayne@68 3697 #if CYTHON_USE_MODULE_STATE
jpayne@68 3698 #endif
jpayne@68 3699 #if CYTHON_USE_MODULE_STATE
jpayne@68 3700 #endif
jpayne@68 3701 #if CYTHON_USE_MODULE_STATE
jpayne@68 3702 #endif
jpayne@68 3703 #if CYTHON_USE_MODULE_STATE
jpayne@68 3704 #endif
jpayne@68 3705 #if CYTHON_USE_MODULE_STATE
jpayne@68 3706 #endif
jpayne@68 3707 #if CYTHON_USE_MODULE_STATE
jpayne@68 3708 #endif
jpayne@68 3709 PyTypeObject *__pyx_ptype_7cpython_4bool_bool;
jpayne@68 3710 #if CYTHON_USE_MODULE_STATE
jpayne@68 3711 #endif
jpayne@68 3712 #if CYTHON_USE_MODULE_STATE
jpayne@68 3713 #endif
jpayne@68 3714 #if CYTHON_USE_MODULE_STATE
jpayne@68 3715 #endif
jpayne@68 3716 #if CYTHON_USE_MODULE_STATE
jpayne@68 3717 #endif
jpayne@68 3718 PyTypeObject *__pyx_ptype_7cpython_7complex_complex;
jpayne@68 3719 #if CYTHON_USE_MODULE_STATE
jpayne@68 3720 #endif
jpayne@68 3721 #if CYTHON_USE_MODULE_STATE
jpayne@68 3722 #endif
jpayne@68 3723 #if CYTHON_USE_MODULE_STATE
jpayne@68 3724 #endif
jpayne@68 3725 #if CYTHON_USE_MODULE_STATE
jpayne@68 3726 #endif
jpayne@68 3727 #if CYTHON_USE_MODULE_STATE
jpayne@68 3728 #endif
jpayne@68 3729 #if CYTHON_USE_MODULE_STATE
jpayne@68 3730 #endif
jpayne@68 3731 #if CYTHON_USE_MODULE_STATE
jpayne@68 3732 #endif
jpayne@68 3733 #if CYTHON_USE_MODULE_STATE
jpayne@68 3734 #endif
jpayne@68 3735 #if CYTHON_USE_MODULE_STATE
jpayne@68 3736 #endif
jpayne@68 3737 #if CYTHON_USE_MODULE_STATE
jpayne@68 3738 #endif
jpayne@68 3739 #if CYTHON_USE_MODULE_STATE
jpayne@68 3740 #endif
jpayne@68 3741 #if CYTHON_USE_MODULE_STATE
jpayne@68 3742 #endif
jpayne@68 3743 #if CYTHON_USE_MODULE_STATE
jpayne@68 3744 #endif
jpayne@68 3745 #if CYTHON_USE_MODULE_STATE
jpayne@68 3746 #endif
jpayne@68 3747 #if CYTHON_USE_MODULE_STATE
jpayne@68 3748 #endif
jpayne@68 3749 #if CYTHON_USE_MODULE_STATE
jpayne@68 3750 #endif
jpayne@68 3751 #if CYTHON_USE_MODULE_STATE
jpayne@68 3752 #endif
jpayne@68 3753 #if CYTHON_USE_MODULE_STATE
jpayne@68 3754 #endif
jpayne@68 3755 #if CYTHON_USE_MODULE_STATE
jpayne@68 3756 #endif
jpayne@68 3757 #if CYTHON_USE_MODULE_STATE
jpayne@68 3758 #endif
jpayne@68 3759 #if CYTHON_USE_MODULE_STATE
jpayne@68 3760 #endif
jpayne@68 3761 #if CYTHON_USE_MODULE_STATE
jpayne@68 3762 #endif
jpayne@68 3763 #if CYTHON_USE_MODULE_STATE
jpayne@68 3764 #endif
jpayne@68 3765 PyTypeObject *__pyx_ptype_7cpython_5array_array;
jpayne@68 3766 #if CYTHON_USE_MODULE_STATE
jpayne@68 3767 #endif
jpayne@68 3768 #if CYTHON_USE_MODULE_STATE
jpayne@68 3769 PyObject *__pyx_type_5pysam_10libchtslib_HTSFile;
jpayne@68 3770 PyObject *__pyx_type_5pysam_10libchtslib_HFile;
jpayne@68 3771 #endif
jpayne@68 3772 PyTypeObject *__pyx_ptype_5pysam_10libchtslib_HTSFile;
jpayne@68 3773 PyTypeObject *__pyx_ptype_5pysam_10libchtslib_HFile;
jpayne@68 3774 PyObject *__pyx_n_u_ALIGNMENTS;
jpayne@68 3775 PyObject *__pyx_kp_u_An_error_occurred_while_applying;
jpayne@68 3776 PyObject *__pyx_n_s_AttributeError;
jpayne@68 3777 PyObject *__pyx_n_u_BAI;
jpayne@68 3778 PyObject *__pyx_n_u_BAM;
jpayne@68 3779 PyObject *__pyx_n_u_BCF;
jpayne@68 3780 PyObject *__pyx_n_u_BED;
jpayne@68 3781 PyObject *__pyx_n_u_BGZF;
jpayne@68 3782 PyObject *__pyx_n_u_BINARY_FORMAT;
jpayne@68 3783 PyObject *__pyx_n_s_CFalse;
jpayne@68 3784 PyObject *__pyx_n_u_CRAI;
jpayne@68 3785 PyObject *__pyx_n_u_CRAM;
jpayne@68 3786 PyObject *__pyx_n_u_CSI;
jpayne@68 3787 PyObject *__pyx_n_s_CTrue;
jpayne@68 3788 PyObject *__pyx_n_u_CUSTOM;
jpayne@68 3789 PyObject *__pyx_n_s_CallableValue;
jpayne@68 3790 PyObject *__pyx_n_s_CallableValue___bool;
jpayne@68 3791 PyObject *__pyx_n_s_CallableValue___call;
jpayne@68 3792 PyObject *__pyx_n_s_CallableValue___eq;
jpayne@68 3793 PyObject *__pyx_n_s_CallableValue___init;
jpayne@68 3794 PyObject *__pyx_n_s_CallableValue___ne;
jpayne@68 3795 PyObject *__pyx_n_s_CallableValue___nonzero;
jpayne@68 3796 PyObject *__pyx_kp_u_Cannot_create_hfile;
jpayne@68 3797 PyObject *__pyx_kp_u_Flushing;
jpayne@68 3798 PyObject *__pyx_n_u_GZI;
jpayne@68 3799 PyObject *__pyx_n_u_GZIP;
jpayne@68 3800 PyObject *__pyx_n_s_HFile;
jpayne@68 3801 PyObject *__pyx_n_u_HFile;
jpayne@68 3802 PyObject *__pyx_n_s_HFile___enter;
jpayne@68 3803 PyObject *__pyx_n_s_HFile___exit;
jpayne@68 3804 PyObject *__pyx_n_s_HFile___reduce_cython;
jpayne@68 3805 PyObject *__pyx_n_s_HFile___setstate_cython;
jpayne@68 3806 PyObject *__pyx_n_s_HFile_close;
jpayne@68 3807 PyObject *__pyx_n_s_HFile_fileno;
jpayne@68 3808 PyObject *__pyx_n_s_HFile_flush;
jpayne@68 3809 PyObject *__pyx_n_s_HFile_isatty;
jpayne@68 3810 PyObject *__pyx_n_s_HFile_read;
jpayne@68 3811 PyObject *__pyx_n_s_HFile_readable;
jpayne@68 3812 PyObject *__pyx_n_s_HFile_readall;
jpayne@68 3813 PyObject *__pyx_n_s_HFile_readinto;
jpayne@68 3814 PyObject *__pyx_n_s_HFile_readline;
jpayne@68 3815 PyObject *__pyx_n_s_HFile_readlines;
jpayne@68 3816 PyObject *__pyx_n_s_HFile_seek;
jpayne@68 3817 PyObject *__pyx_n_s_HFile_seekable;
jpayne@68 3818 PyObject *__pyx_n_s_HFile_tell;
jpayne@68 3819 PyObject *__pyx_n_s_HFile_truncate;
jpayne@68 3820 PyObject *__pyx_n_s_HFile_writable;
jpayne@68 3821 PyObject *__pyx_n_s_HFile_write;
jpayne@68 3822 PyObject *__pyx_n_s_HFile_writelines;
jpayne@68 3823 PyObject *__pyx_n_s_HTSFile;
jpayne@68 3824 PyObject *__pyx_n_u_HTSFile;
jpayne@68 3825 PyObject *__pyx_n_s_HTSFile___enter;
jpayne@68 3826 PyObject *__pyx_n_s_HTSFile___exit;
jpayne@68 3827 PyObject *__pyx_n_s_HTSFile___reduce_cython;
jpayne@68 3828 PyObject *__pyx_n_s_HTSFile___setstate_cython;
jpayne@68 3829 PyObject *__pyx_n_s_HTSFile_add_hts_options;
jpayne@68 3830 PyObject *__pyx_n_s_HTSFile_check_truncation;
jpayne@68 3831 PyObject *__pyx_n_s_HTSFile_close;
jpayne@68 3832 PyObject *__pyx_n_s_HTSFile_flush;
jpayne@68 3833 PyObject *__pyx_n_s_HTSFile_get_reference_name;
jpayne@68 3834 PyObject *__pyx_n_s_HTSFile_get_tid;
jpayne@68 3835 PyObject *__pyx_n_s_HTSFile_is_valid_reference_name;
jpayne@68 3836 PyObject *__pyx_n_s_HTSFile_is_valid_tid;
jpayne@68 3837 PyObject *__pyx_n_s_HTSFile_parse_region;
jpayne@68 3838 PyObject *__pyx_n_s_HTSFile_reset;
jpayne@68 3839 PyObject *__pyx_n_s_HTSFile_seek;
jpayne@68 3840 PyObject *__pyx_n_s_HTSFile_tell;
jpayne@68 3841 PyObject *__pyx_n_u_INDEX;
jpayne@68 3842 PyObject *__pyx_n_s_IOError;
jpayne@68 3843 PyObject *__pyx_kp_u_I_O_operation_on_closed_file;
jpayne@68 3844 PyObject *__pyx_n_s_IndexError;
jpayne@68 3845 PyObject *__pyx_kp_u_Invalid_format_option_specified;
jpayne@68 3846 PyObject *__pyx_n_s_MemoryError;
jpayne@68 3847 PyObject *__pyx_n_u_NONE;
jpayne@68 3848 PyObject *__pyx_n_s_NotImplementedError;
jpayne@68 3849 PyObject *__pyx_n_s_OSError;
jpayne@68 3850 PyObject *__pyx_n_s_OverflowError;
jpayne@68 3851 PyObject *__pyx_n_u_REGIONS;
jpayne@68 3852 PyObject *__pyx_n_s_RuntimeError;
jpayne@68 3853 PyObject *__pyx_n_u_SAM;
jpayne@68 3854 PyObject *__pyx_n_s_SEEK_SET;
jpayne@68 3855 PyObject *__pyx_n_s_StopIteration;
jpayne@68 3856 PyObject *__pyx_n_u_TBI;
jpayne@68 3857 PyObject *__pyx_n_u_TEXT_FORMAT;
jpayne@68 3858 PyObject *__pyx_n_s_TypeError;
jpayne@68 3859 PyObject *__pyx_n_u_UNKNOWN;
jpayne@68 3860 PyObject *__pyx_n_u_VARIANTS;
jpayne@68 3861 PyObject *__pyx_n_u_VCF;
jpayne@68 3862 PyObject *__pyx_n_s_ValueError;
jpayne@68 3863 PyObject *__pyx_kp_b__13;
jpayne@68 3864 PyObject *__pyx_kp_u__55;
jpayne@68 3865 PyObject *__pyx_kp_u__56;
jpayne@68 3866 PyObject *__pyx_n_s__58;
jpayne@68 3867 PyObject *__pyx_kp_u__58;
jpayne@68 3868 PyObject *__pyx_kp_u__59;
jpayne@68 3869 PyObject *__pyx_n_s__97;
jpayne@68 3870 PyObject *__pyx_n_s_add_hts_options;
jpayne@68 3871 PyObject *__pyx_n_s_all;
jpayne@68 3872 PyObject *__pyx_n_s_asyncio_coroutines;
jpayne@68 3873 PyObject *__pyx_n_b_b;
jpayne@68 3874 PyObject *__pyx_n_s_b;
jpayne@68 3875 PyObject *__pyx_n_s_bgzfp;
jpayne@68 3876 PyObject *__pyx_n_s_bool;
jpayne@68 3877 PyObject *__pyx_n_s_buf;
jpayne@68 3878 PyObject *__pyx_n_s_bytes_read;
jpayne@68 3879 PyObject *__pyx_n_b_c;
jpayne@68 3880 PyObject *__pyx_n_s_call;
jpayne@68 3881 PyObject *__pyx_n_s_check_truncation;
jpayne@68 3882 PyObject *__pyx_n_s_chunk_size;
jpayne@68 3883 PyObject *__pyx_n_s_class_getitem;
jpayne@68 3884 PyObject *__pyx_n_s_cline_in_traceback;
jpayne@68 3885 PyObject *__pyx_n_s_close;
jpayne@68 3886 PyObject *__pyx_n_s_closefd;
jpayne@68 3887 PyObject *__pyx_n_s_contig;
jpayne@68 3888 PyObject *__pyx_kp_u_contig_and_reference_should_not;
jpayne@68 3889 PyObject *__pyx_n_s_coord;
jpayne@68 3890 PyObject *__pyx_n_s_cpart;
jpayne@68 3891 PyObject *__pyx_n_s_dict;
jpayne@68 3892 PyObject *__pyx_kp_u_disable;
jpayne@68 3893 PyObject *__pyx_n_s_doc;
jpayne@68 3894 PyObject *__pyx_kp_u_enable;
jpayne@68 3895 PyObject *__pyx_n_s_end;
jpayne@68 3896 PyObject *__pyx_n_s_enter;
jpayne@68 3897 PyObject *__pyx_n_s_eq;
jpayne@68 3898 PyObject *__pyx_kp_u_error_checking_for_EOF_marker;
jpayne@68 3899 PyObject *__pyx_n_s_exc_type;
jpayne@68 3900 PyObject *__pyx_n_s_exc_value;
jpayne@68 3901 PyObject *__pyx_n_s_exit;
jpayne@68 3902 PyObject *__pyx_kp_u_failed;
jpayne@68 3903 PyObject *__pyx_kp_u_failed_to_close_HFile;
jpayne@68 3904 PyObject *__pyx_kp_u_failed_to_flush_HFile;
jpayne@68 3905 PyObject *__pyx_kp_u_failed_to_open_HFile;
jpayne@68 3906 PyObject *__pyx_kp_u_failed_to_read_HFile;
jpayne@68 3907 PyObject *__pyx_kp_u_fd;
jpayne@68 3908 PyObject *__pyx_n_s_fileno;
jpayne@68 3909 PyObject *__pyx_kp_u_fileno_not_available;
jpayne@68 3910 PyObject *__pyx_n_s_flush;
jpayne@68 3911 PyObject *__pyx_n_s_format;
jpayne@68 3912 PyObject *__pyx_n_s_format_option;
jpayne@68 3913 PyObject *__pyx_n_s_format_options;
jpayne@68 3914 PyObject *__pyx_n_s_fp;
jpayne@68 3915 PyObject *__pyx_kp_u_gc;
jpayne@68 3916 PyObject *__pyx_n_s_get_reference_name;
jpayne@68 3917 PyObject *__pyx_n_s_get_tid;
jpayne@68 3918 PyObject *__pyx_n_s_get_verbosity;
jpayne@68 3919 PyObject *__pyx_n_u_get_verbosity;
jpayne@68 3920 PyObject *__pyx_n_s_getstate;
jpayne@68 3921 PyObject *__pyx_n_s_got;
jpayne@68 3922 PyObject *__pyx_n_s_ignore_truncation;
jpayne@68 3923 PyObject *__pyx_n_s_import;
jpayne@68 3924 PyObject *__pyx_n_s_init;
jpayne@68 3925 PyObject *__pyx_n_s_init_subclass;
jpayne@68 3926 PyObject *__pyx_n_s_initializing;
jpayne@68 3927 PyObject *__pyx_kp_u_invalid_contig_s;
jpayne@68 3928 PyObject *__pyx_kp_u_invalid_coordinates_start_i_stop;
jpayne@68 3929 PyObject *__pyx_kp_u_invalid_tid;
jpayne@68 3930 PyObject *__pyx_n_s_io;
jpayne@68 3931 PyObject *__pyx_n_s_is_coroutine;
jpayne@68 3932 PyObject *__pyx_n_s_is_open;
jpayne@68 3933 PyObject *__pyx_n_s_is_valid_reference_name;
jpayne@68 3934 PyObject *__pyx_n_s_is_valid_tid;
jpayne@68 3935 PyObject *__pyx_n_s_isatty;
jpayne@68 3936 PyObject *__pyx_kp_u_isenabled;
jpayne@68 3937 PyObject *__pyx_n_s_join;
jpayne@68 3938 PyObject *__pyx_n_s_line;
jpayne@68 3939 PyObject *__pyx_n_s_lines;
jpayne@68 3940 PyObject *__pyx_n_s_main;
jpayne@68 3941 PyObject *__pyx_n_s_metaclass;
jpayne@68 3942 PyObject *__pyx_kp_u_metadata_not_available_on_closed;
jpayne@68 3943 PyObject *__pyx_n_s_mode;
jpayne@68 3944 PyObject *__pyx_n_s_module;
jpayne@68 3945 PyObject *__pyx_n_s_mro_entries;
jpayne@68 3946 PyObject *__pyx_n_s_msg;
jpayne@68 3947 PyObject *__pyx_n_s_mv;
jpayne@68 3948 PyObject *__pyx_n_s_name;
jpayne@68 3949 PyObject *__pyx_n_s_name_2;
jpayne@68 3950 PyObject *__pyx_n_s_ne;
jpayne@68 3951 PyObject *__pyx_kp_u_no_BGZF_EOF_marker_file_may_be_t;
jpayne@68 3952 PyObject *__pyx_kp_s_no_default___reduce___due_to_non;
jpayne@68 3953 PyObject *__pyx_n_s_nonzero;
jpayne@68 3954 PyObject *__pyx_n_s_object;
jpayne@68 3955 PyObject *__pyx_n_s_off;
jpayne@68 3956 PyObject *__pyx_n_s_offset;
jpayne@68 3957 PyObject *__pyx_kp_u_operation_on_closed_HFile;
jpayne@68 3958 PyObject *__pyx_n_s_opts;
jpayne@68 3959 PyObject *__pyx_n_s_os;
jpayne@68 3960 PyObject *__pyx_n_s_other;
jpayne@68 3961 PyObject *__pyx_n_s_parse_region;
jpayne@68 3962 PyObject *__pyx_n_s_part;
jpayne@68 3963 PyObject *__pyx_n_s_parts;
jpayne@68 3964 PyObject *__pyx_n_s_prepare;
jpayne@68 3965 PyObject *__pyx_n_s_pysam_libchtslib;
jpayne@68 3966 PyObject *__pyx_kp_s_pysam_libchtslib_pyx;
jpayne@68 3967 PyObject *__pyx_n_s_pyx_state;
jpayne@68 3968 PyObject *__pyx_n_s_pyx_vtable;
jpayne@68 3969 PyObject *__pyx_n_s_qualname;
jpayne@68 3970 PyObject *__pyx_n_u_r;
jpayne@68 3971 PyObject *__pyx_n_s_re;
jpayne@68 3972 PyObject *__pyx_n_s_read;
jpayne@68 3973 PyObject *__pyx_n_s_readable;
jpayne@68 3974 PyObject *__pyx_n_s_readall;
jpayne@68 3975 PyObject *__pyx_n_s_readinto;
jpayne@68 3976 PyObject *__pyx_n_s_readline;
jpayne@68 3977 PyObject *__pyx_n_s_readlines;
jpayne@68 3978 PyObject *__pyx_n_s_reduce;
jpayne@68 3979 PyObject *__pyx_n_s_reduce_cython;
jpayne@68 3980 PyObject *__pyx_n_s_reduce_ex;
jpayne@68 3981 PyObject *__pyx_n_s_reference;
jpayne@68 3982 PyObject *__pyx_n_s_region;
jpayne@68 3983 PyObject *__pyx_n_s_replace;
jpayne@68 3984 PyObject *__pyx_n_s_reset;
jpayne@68 3985 PyObject *__pyx_n_s_ret;
jpayne@68 3986 PyObject *__pyx_n_s_rstart;
jpayne@68 3987 PyObject *__pyx_n_s_rstop;
jpayne@68 3988 PyObject *__pyx_n_s_rtid;
jpayne@68 3989 PyObject *__pyx_n_s_rval;
jpayne@68 3990 PyObject *__pyx_n_s_seek;
jpayne@68 3991 PyObject *__pyx_kp_u_seek_failed_on_HFile;
jpayne@68 3992 PyObject *__pyx_kp_u_seek_not_available_in_streams;
jpayne@68 3993 PyObject *__pyx_kp_u_seek_not_implemented_in_files_co;
jpayne@68 3994 PyObject *__pyx_n_s_seekable;
jpayne@68 3995 PyObject *__pyx_n_s_self;
jpayne@68 3996 PyObject *__pyx_kp_s_self_fp_cannot_be_converted_to_a;
jpayne@68 3997 PyObject *__pyx_n_s_set_name;
jpayne@68 3998 PyObject *__pyx_n_s_set_verbosity;
jpayne@68 3999 PyObject *__pyx_n_u_set_verbosity;
jpayne@68 4000 PyObject *__pyx_n_s_setstate;
jpayne@68 4001 PyObject *__pyx_n_s_setstate_cython;
jpayne@68 4002 PyObject *__pyx_n_s_size;
jpayne@68 4003 PyObject *__pyx_n_s_spec;
jpayne@68 4004 PyObject *__pyx_n_s_split;
jpayne@68 4005 PyObject *__pyx_n_s_start;
jpayne@68 4006 PyObject *__pyx_kp_u_start_out_of_range_i;
jpayne@68 4007 PyObject *__pyx_n_s_stop;
jpayne@68 4008 PyObject *__pyx_kp_u_stop_and_end_should_not_both_be;
jpayne@68 4009 PyObject *__pyx_kp_u_stop_out_of_range_i;
jpayne@68 4010 PyObject *__pyx_kp_s_stringsource;
jpayne@68 4011 PyObject *__pyx_n_s_super;
jpayne@68 4012 PyObject *__pyx_n_s_tb;
jpayne@68 4013 PyObject *__pyx_n_s_tell;
jpayne@68 4014 PyObject *__pyx_kp_u_tell_failed_on_HFile;
jpayne@68 4015 PyObject *__pyx_kp_u_tell_not_available_in_streams;
jpayne@68 4016 PyObject *__pyx_n_s_test;
jpayne@68 4017 PyObject *__pyx_n_s_tid;
jpayne@68 4018 PyObject *__pyx_n_s_traceback;
jpayne@68 4019 PyObject *__pyx_n_s_truncate;
jpayne@68 4020 PyObject *__pyx_n_s_type;
jpayne@68 4021 PyObject *__pyx_n_s_value;
jpayne@68 4022 PyObject *__pyx_n_s_verbosity;
jpayne@68 4023 PyObject *__pyx_n_u_w;
jpayne@68 4024 PyObject *__pyx_n_s_warn;
jpayne@68 4025 PyObject *__pyx_n_s_warnings;
jpayne@68 4026 PyObject *__pyx_n_s_whence;
jpayne@68 4027 PyObject *__pyx_n_s_writable;
jpayne@68 4028 PyObject *__pyx_n_s_write;
jpayne@68 4029 PyObject *__pyx_kp_u_write_failed_on_HFile;
jpayne@68 4030 PyObject *__pyx_n_s_writelines;
jpayne@68 4031 PyObject *__pyx_int_0;
jpayne@68 4032 PyObject *__pyx_int_1;
jpayne@68 4033 PyObject *__pyx_int_neg_1;
jpayne@68 4034 int __pyx_k__18;
jpayne@68 4035 int __pyx_k__41;
jpayne@68 4036 PyObject *__pyx_codeobj_;
jpayne@68 4037 PyObject *__pyx_tuple__5;
jpayne@68 4038 PyObject *__pyx_tuple__6;
jpayne@68 4039 PyObject *__pyx_tuple__39;
jpayne@68 4040 PyObject *__pyx_tuple__43;
jpayne@68 4041 PyObject *__pyx_tuple__44;
jpayne@68 4042 PyObject *__pyx_tuple__46;
jpayne@68 4043 PyObject *__pyx_tuple__47;
jpayne@68 4044 PyObject *__pyx_tuple__48;
jpayne@68 4045 PyObject *__pyx_tuple__49;
jpayne@68 4046 PyObject *__pyx_tuple__51;
jpayne@68 4047 PyObject *__pyx_tuple__53;
jpayne@68 4048 PyObject *__pyx_tuple__54;
jpayne@68 4049 PyObject *__pyx_tuple__57;
jpayne@68 4050 PyObject *__pyx_tuple__66;
jpayne@68 4051 PyObject *__pyx_tuple__67;
jpayne@68 4052 PyObject *__pyx_tuple__68;
jpayne@68 4053 PyObject *__pyx_tuple__69;
jpayne@68 4054 PyObject *__pyx_tuple__70;
jpayne@68 4055 PyObject *__pyx_tuple__71;
jpayne@68 4056 PyObject *__pyx_tuple__72;
jpayne@68 4057 PyObject *__pyx_tuple__73;
jpayne@68 4058 PyObject *__pyx_tuple__74;
jpayne@68 4059 PyObject *__pyx_tuple__75;
jpayne@68 4060 PyObject *__pyx_tuple__76;
jpayne@68 4061 PyObject *__pyx_tuple__77;
jpayne@68 4062 PyObject *__pyx_tuple__78;
jpayne@68 4063 PyObject *__pyx_tuple__79;
jpayne@68 4064 PyObject *__pyx_tuple__80;
jpayne@68 4065 PyObject *__pyx_tuple__81;
jpayne@68 4066 PyObject *__pyx_tuple__82;
jpayne@68 4067 PyObject *__pyx_tuple__83;
jpayne@68 4068 PyObject *__pyx_tuple__84;
jpayne@68 4069 PyObject *__pyx_tuple__85;
jpayne@68 4070 PyObject *__pyx_tuple__86;
jpayne@68 4071 PyObject *__pyx_tuple__87;
jpayne@68 4072 PyObject *__pyx_tuple__88;
jpayne@68 4073 PyObject *__pyx_tuple__89;
jpayne@68 4074 PyObject *__pyx_tuple__90;
jpayne@68 4075 PyObject *__pyx_tuple__91;
jpayne@68 4076 PyObject *__pyx_tuple__92;
jpayne@68 4077 PyObject *__pyx_tuple__93;
jpayne@68 4078 PyObject *__pyx_tuple__94;
jpayne@68 4079 PyObject *__pyx_tuple__95;
jpayne@68 4080 PyObject *__pyx_tuple__96;
jpayne@68 4081 PyObject *__pyx_codeobj__2;
jpayne@68 4082 PyObject *__pyx_codeobj__3;
jpayne@68 4083 PyObject *__pyx_codeobj__4;
jpayne@68 4084 PyObject *__pyx_codeobj__7;
jpayne@68 4085 PyObject *__pyx_codeobj__8;
jpayne@68 4086 PyObject *__pyx_codeobj__9;
jpayne@68 4087 PyObject *__pyx_codeobj__10;
jpayne@68 4088 PyObject *__pyx_codeobj__11;
jpayne@68 4089 PyObject *__pyx_codeobj__12;
jpayne@68 4090 PyObject *__pyx_codeobj__14;
jpayne@68 4091 PyObject *__pyx_codeobj__15;
jpayne@68 4092 PyObject *__pyx_codeobj__16;
jpayne@68 4093 PyObject *__pyx_codeobj__17;
jpayne@68 4094 PyObject *__pyx_codeobj__19;
jpayne@68 4095 PyObject *__pyx_codeobj__20;
jpayne@68 4096 PyObject *__pyx_codeobj__21;
jpayne@68 4097 PyObject *__pyx_codeobj__22;
jpayne@68 4098 PyObject *__pyx_codeobj__23;
jpayne@68 4099 PyObject *__pyx_codeobj__24;
jpayne@68 4100 PyObject *__pyx_codeobj__25;
jpayne@68 4101 PyObject *__pyx_codeobj__26;
jpayne@68 4102 PyObject *__pyx_codeobj__27;
jpayne@68 4103 PyObject *__pyx_codeobj__28;
jpayne@68 4104 PyObject *__pyx_codeobj__29;
jpayne@68 4105 PyObject *__pyx_codeobj__30;
jpayne@68 4106 PyObject *__pyx_codeobj__31;
jpayne@68 4107 PyObject *__pyx_codeobj__32;
jpayne@68 4108 PyObject *__pyx_codeobj__33;
jpayne@68 4109 PyObject *__pyx_codeobj__34;
jpayne@68 4110 PyObject *__pyx_codeobj__35;
jpayne@68 4111 PyObject *__pyx_codeobj__36;
jpayne@68 4112 PyObject *__pyx_codeobj__37;
jpayne@68 4113 PyObject *__pyx_codeobj__38;
jpayne@68 4114 PyObject *__pyx_codeobj__40;
jpayne@68 4115 PyObject *__pyx_codeobj__42;
jpayne@68 4116 PyObject *__pyx_codeobj__45;
jpayne@68 4117 PyObject *__pyx_codeobj__50;
jpayne@68 4118 PyObject *__pyx_codeobj__52;
jpayne@68 4119 PyObject *__pyx_codeobj__60;
jpayne@68 4120 PyObject *__pyx_codeobj__61;
jpayne@68 4121 PyObject *__pyx_codeobj__62;
jpayne@68 4122 PyObject *__pyx_codeobj__63;
jpayne@68 4123 PyObject *__pyx_codeobj__64;
jpayne@68 4124 PyObject *__pyx_codeobj__65;
jpayne@68 4125 } __pyx_mstate;
jpayne@68 4126
jpayne@68 4127 #if CYTHON_USE_MODULE_STATE
jpayne@68 4128 #ifdef __cplusplus
jpayne@68 4129 namespace {
jpayne@68 4130 extern struct PyModuleDef __pyx_moduledef;
jpayne@68 4131 } /* anonymous namespace */
jpayne@68 4132 #else
jpayne@68 4133 static struct PyModuleDef __pyx_moduledef;
jpayne@68 4134 #endif
jpayne@68 4135
jpayne@68 4136 #define __pyx_mstate(o) ((__pyx_mstate *)__Pyx_PyModule_GetState(o))
jpayne@68 4137
jpayne@68 4138 #define __pyx_mstate_global (__pyx_mstate(PyState_FindModule(&__pyx_moduledef)))
jpayne@68 4139
jpayne@68 4140 #define __pyx_m (PyState_FindModule(&__pyx_moduledef))
jpayne@68 4141 #else
jpayne@68 4142 static __pyx_mstate __pyx_mstate_global_static =
jpayne@68 4143 #ifdef __cplusplus
jpayne@68 4144 {};
jpayne@68 4145 #else
jpayne@68 4146 {0};
jpayne@68 4147 #endif
jpayne@68 4148 static __pyx_mstate *__pyx_mstate_global = &__pyx_mstate_global_static;
jpayne@68 4149 #endif
jpayne@68 4150 /* #### Code section: module_state_clear ### */
jpayne@68 4151 #if CYTHON_USE_MODULE_STATE
jpayne@68 4152 static int __pyx_m_clear(PyObject *m) {
jpayne@68 4153 __pyx_mstate *clear_module_state = __pyx_mstate(m);
jpayne@68 4154 if (!clear_module_state) return 0;
jpayne@68 4155 Py_CLEAR(clear_module_state->__pyx_d);
jpayne@68 4156 Py_CLEAR(clear_module_state->__pyx_b);
jpayne@68 4157 Py_CLEAR(clear_module_state->__pyx_cython_runtime);
jpayne@68 4158 Py_CLEAR(clear_module_state->__pyx_empty_tuple);
jpayne@68 4159 Py_CLEAR(clear_module_state->__pyx_empty_bytes);
jpayne@68 4160 Py_CLEAR(clear_module_state->__pyx_empty_unicode);
jpayne@68 4161 #ifdef __Pyx_CyFunction_USED
jpayne@68 4162 Py_CLEAR(clear_module_state->__pyx_CyFunctionType);
jpayne@68 4163 #endif
jpayne@68 4164 #ifdef __Pyx_FusedFunction_USED
jpayne@68 4165 Py_CLEAR(clear_module_state->__pyx_FusedFunctionType);
jpayne@68 4166 #endif
jpayne@68 4167 Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_4type_type);
jpayne@68 4168 Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_4bool_bool);
jpayne@68 4169 Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_7complex_complex);
jpayne@68 4170 Py_CLEAR(clear_module_state->__pyx_ptype_7cpython_5array_array);
jpayne@68 4171 Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_10libchtslib_HTSFile);
jpayne@68 4172 Py_CLEAR(clear_module_state->__pyx_type_5pysam_10libchtslib_HTSFile);
jpayne@68 4173 Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_10libchtslib_HFile);
jpayne@68 4174 Py_CLEAR(clear_module_state->__pyx_type_5pysam_10libchtslib_HFile);
jpayne@68 4175 Py_CLEAR(clear_module_state->__pyx_n_u_ALIGNMENTS);
jpayne@68 4176 Py_CLEAR(clear_module_state->__pyx_kp_u_An_error_occurred_while_applying);
jpayne@68 4177 Py_CLEAR(clear_module_state->__pyx_n_s_AttributeError);
jpayne@68 4178 Py_CLEAR(clear_module_state->__pyx_n_u_BAI);
jpayne@68 4179 Py_CLEAR(clear_module_state->__pyx_n_u_BAM);
jpayne@68 4180 Py_CLEAR(clear_module_state->__pyx_n_u_BCF);
jpayne@68 4181 Py_CLEAR(clear_module_state->__pyx_n_u_BED);
jpayne@68 4182 Py_CLEAR(clear_module_state->__pyx_n_u_BGZF);
jpayne@68 4183 Py_CLEAR(clear_module_state->__pyx_n_u_BINARY_FORMAT);
jpayne@68 4184 Py_CLEAR(clear_module_state->__pyx_n_s_CFalse);
jpayne@68 4185 Py_CLEAR(clear_module_state->__pyx_n_u_CRAI);
jpayne@68 4186 Py_CLEAR(clear_module_state->__pyx_n_u_CRAM);
jpayne@68 4187 Py_CLEAR(clear_module_state->__pyx_n_u_CSI);
jpayne@68 4188 Py_CLEAR(clear_module_state->__pyx_n_s_CTrue);
jpayne@68 4189 Py_CLEAR(clear_module_state->__pyx_n_u_CUSTOM);
jpayne@68 4190 Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue);
jpayne@68 4191 Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue___bool);
jpayne@68 4192 Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue___call);
jpayne@68 4193 Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue___eq);
jpayne@68 4194 Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue___init);
jpayne@68 4195 Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue___ne);
jpayne@68 4196 Py_CLEAR(clear_module_state->__pyx_n_s_CallableValue___nonzero);
jpayne@68 4197 Py_CLEAR(clear_module_state->__pyx_kp_u_Cannot_create_hfile);
jpayne@68 4198 Py_CLEAR(clear_module_state->__pyx_kp_u_Flushing);
jpayne@68 4199 Py_CLEAR(clear_module_state->__pyx_n_u_GZI);
jpayne@68 4200 Py_CLEAR(clear_module_state->__pyx_n_u_GZIP);
jpayne@68 4201 Py_CLEAR(clear_module_state->__pyx_n_s_HFile);
jpayne@68 4202 Py_CLEAR(clear_module_state->__pyx_n_u_HFile);
jpayne@68 4203 Py_CLEAR(clear_module_state->__pyx_n_s_HFile___enter);
jpayne@68 4204 Py_CLEAR(clear_module_state->__pyx_n_s_HFile___exit);
jpayne@68 4205 Py_CLEAR(clear_module_state->__pyx_n_s_HFile___reduce_cython);
jpayne@68 4206 Py_CLEAR(clear_module_state->__pyx_n_s_HFile___setstate_cython);
jpayne@68 4207 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_close);
jpayne@68 4208 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_fileno);
jpayne@68 4209 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_flush);
jpayne@68 4210 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_isatty);
jpayne@68 4211 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_read);
jpayne@68 4212 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_readable);
jpayne@68 4213 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_readall);
jpayne@68 4214 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_readinto);
jpayne@68 4215 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_readline);
jpayne@68 4216 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_readlines);
jpayne@68 4217 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_seek);
jpayne@68 4218 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_seekable);
jpayne@68 4219 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_tell);
jpayne@68 4220 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_truncate);
jpayne@68 4221 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_writable);
jpayne@68 4222 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_write);
jpayne@68 4223 Py_CLEAR(clear_module_state->__pyx_n_s_HFile_writelines);
jpayne@68 4224 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile);
jpayne@68 4225 Py_CLEAR(clear_module_state->__pyx_n_u_HTSFile);
jpayne@68 4226 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile___enter);
jpayne@68 4227 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile___exit);
jpayne@68 4228 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile___reduce_cython);
jpayne@68 4229 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile___setstate_cython);
jpayne@68 4230 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_add_hts_options);
jpayne@68 4231 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_check_truncation);
jpayne@68 4232 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_close);
jpayne@68 4233 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_flush);
jpayne@68 4234 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_get_reference_name);
jpayne@68 4235 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_get_tid);
jpayne@68 4236 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_is_valid_reference_name);
jpayne@68 4237 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_is_valid_tid);
jpayne@68 4238 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_parse_region);
jpayne@68 4239 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_reset);
jpayne@68 4240 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_seek);
jpayne@68 4241 Py_CLEAR(clear_module_state->__pyx_n_s_HTSFile_tell);
jpayne@68 4242 Py_CLEAR(clear_module_state->__pyx_n_u_INDEX);
jpayne@68 4243 Py_CLEAR(clear_module_state->__pyx_n_s_IOError);
jpayne@68 4244 Py_CLEAR(clear_module_state->__pyx_kp_u_I_O_operation_on_closed_file);
jpayne@68 4245 Py_CLEAR(clear_module_state->__pyx_n_s_IndexError);
jpayne@68 4246 Py_CLEAR(clear_module_state->__pyx_kp_u_Invalid_format_option_specified);
jpayne@68 4247 Py_CLEAR(clear_module_state->__pyx_n_s_MemoryError);
jpayne@68 4248 Py_CLEAR(clear_module_state->__pyx_n_u_NONE);
jpayne@68 4249 Py_CLEAR(clear_module_state->__pyx_n_s_NotImplementedError);
jpayne@68 4250 Py_CLEAR(clear_module_state->__pyx_n_s_OSError);
jpayne@68 4251 Py_CLEAR(clear_module_state->__pyx_n_s_OverflowError);
jpayne@68 4252 Py_CLEAR(clear_module_state->__pyx_n_u_REGIONS);
jpayne@68 4253 Py_CLEAR(clear_module_state->__pyx_n_s_RuntimeError);
jpayne@68 4254 Py_CLEAR(clear_module_state->__pyx_n_u_SAM);
jpayne@68 4255 Py_CLEAR(clear_module_state->__pyx_n_s_SEEK_SET);
jpayne@68 4256 Py_CLEAR(clear_module_state->__pyx_n_s_StopIteration);
jpayne@68 4257 Py_CLEAR(clear_module_state->__pyx_n_u_TBI);
jpayne@68 4258 Py_CLEAR(clear_module_state->__pyx_n_u_TEXT_FORMAT);
jpayne@68 4259 Py_CLEAR(clear_module_state->__pyx_n_s_TypeError);
jpayne@68 4260 Py_CLEAR(clear_module_state->__pyx_n_u_UNKNOWN);
jpayne@68 4261 Py_CLEAR(clear_module_state->__pyx_n_u_VARIANTS);
jpayne@68 4262 Py_CLEAR(clear_module_state->__pyx_n_u_VCF);
jpayne@68 4263 Py_CLEAR(clear_module_state->__pyx_n_s_ValueError);
jpayne@68 4264 Py_CLEAR(clear_module_state->__pyx_kp_b__13);
jpayne@68 4265 Py_CLEAR(clear_module_state->__pyx_kp_u__55);
jpayne@68 4266 Py_CLEAR(clear_module_state->__pyx_kp_u__56);
jpayne@68 4267 Py_CLEAR(clear_module_state->__pyx_n_s__58);
jpayne@68 4268 Py_CLEAR(clear_module_state->__pyx_kp_u__58);
jpayne@68 4269 Py_CLEAR(clear_module_state->__pyx_kp_u__59);
jpayne@68 4270 Py_CLEAR(clear_module_state->__pyx_n_s__97);
jpayne@68 4271 Py_CLEAR(clear_module_state->__pyx_n_s_add_hts_options);
jpayne@68 4272 Py_CLEAR(clear_module_state->__pyx_n_s_all);
jpayne@68 4273 Py_CLEAR(clear_module_state->__pyx_n_s_asyncio_coroutines);
jpayne@68 4274 Py_CLEAR(clear_module_state->__pyx_n_b_b);
jpayne@68 4275 Py_CLEAR(clear_module_state->__pyx_n_s_b);
jpayne@68 4276 Py_CLEAR(clear_module_state->__pyx_n_s_bgzfp);
jpayne@68 4277 Py_CLEAR(clear_module_state->__pyx_n_s_bool);
jpayne@68 4278 Py_CLEAR(clear_module_state->__pyx_n_s_buf);
jpayne@68 4279 Py_CLEAR(clear_module_state->__pyx_n_s_bytes_read);
jpayne@68 4280 Py_CLEAR(clear_module_state->__pyx_n_b_c);
jpayne@68 4281 Py_CLEAR(clear_module_state->__pyx_n_s_call);
jpayne@68 4282 Py_CLEAR(clear_module_state->__pyx_n_s_check_truncation);
jpayne@68 4283 Py_CLEAR(clear_module_state->__pyx_n_s_chunk_size);
jpayne@68 4284 Py_CLEAR(clear_module_state->__pyx_n_s_class_getitem);
jpayne@68 4285 Py_CLEAR(clear_module_state->__pyx_n_s_cline_in_traceback);
jpayne@68 4286 Py_CLEAR(clear_module_state->__pyx_n_s_close);
jpayne@68 4287 Py_CLEAR(clear_module_state->__pyx_n_s_closefd);
jpayne@68 4288 Py_CLEAR(clear_module_state->__pyx_n_s_contig);
jpayne@68 4289 Py_CLEAR(clear_module_state->__pyx_kp_u_contig_and_reference_should_not);
jpayne@68 4290 Py_CLEAR(clear_module_state->__pyx_n_s_coord);
jpayne@68 4291 Py_CLEAR(clear_module_state->__pyx_n_s_cpart);
jpayne@68 4292 Py_CLEAR(clear_module_state->__pyx_n_s_dict);
jpayne@68 4293 Py_CLEAR(clear_module_state->__pyx_kp_u_disable);
jpayne@68 4294 Py_CLEAR(clear_module_state->__pyx_n_s_doc);
jpayne@68 4295 Py_CLEAR(clear_module_state->__pyx_kp_u_enable);
jpayne@68 4296 Py_CLEAR(clear_module_state->__pyx_n_s_end);
jpayne@68 4297 Py_CLEAR(clear_module_state->__pyx_n_s_enter);
jpayne@68 4298 Py_CLEAR(clear_module_state->__pyx_n_s_eq);
jpayne@68 4299 Py_CLEAR(clear_module_state->__pyx_kp_u_error_checking_for_EOF_marker);
jpayne@68 4300 Py_CLEAR(clear_module_state->__pyx_n_s_exc_type);
jpayne@68 4301 Py_CLEAR(clear_module_state->__pyx_n_s_exc_value);
jpayne@68 4302 Py_CLEAR(clear_module_state->__pyx_n_s_exit);
jpayne@68 4303 Py_CLEAR(clear_module_state->__pyx_kp_u_failed);
jpayne@68 4304 Py_CLEAR(clear_module_state->__pyx_kp_u_failed_to_close_HFile);
jpayne@68 4305 Py_CLEAR(clear_module_state->__pyx_kp_u_failed_to_flush_HFile);
jpayne@68 4306 Py_CLEAR(clear_module_state->__pyx_kp_u_failed_to_open_HFile);
jpayne@68 4307 Py_CLEAR(clear_module_state->__pyx_kp_u_failed_to_read_HFile);
jpayne@68 4308 Py_CLEAR(clear_module_state->__pyx_kp_u_fd);
jpayne@68 4309 Py_CLEAR(clear_module_state->__pyx_n_s_fileno);
jpayne@68 4310 Py_CLEAR(clear_module_state->__pyx_kp_u_fileno_not_available);
jpayne@68 4311 Py_CLEAR(clear_module_state->__pyx_n_s_flush);
jpayne@68 4312 Py_CLEAR(clear_module_state->__pyx_n_s_format);
jpayne@68 4313 Py_CLEAR(clear_module_state->__pyx_n_s_format_option);
jpayne@68 4314 Py_CLEAR(clear_module_state->__pyx_n_s_format_options);
jpayne@68 4315 Py_CLEAR(clear_module_state->__pyx_n_s_fp);
jpayne@68 4316 Py_CLEAR(clear_module_state->__pyx_kp_u_gc);
jpayne@68 4317 Py_CLEAR(clear_module_state->__pyx_n_s_get_reference_name);
jpayne@68 4318 Py_CLEAR(clear_module_state->__pyx_n_s_get_tid);
jpayne@68 4319 Py_CLEAR(clear_module_state->__pyx_n_s_get_verbosity);
jpayne@68 4320 Py_CLEAR(clear_module_state->__pyx_n_u_get_verbosity);
jpayne@68 4321 Py_CLEAR(clear_module_state->__pyx_n_s_getstate);
jpayne@68 4322 Py_CLEAR(clear_module_state->__pyx_n_s_got);
jpayne@68 4323 Py_CLEAR(clear_module_state->__pyx_n_s_ignore_truncation);
jpayne@68 4324 Py_CLEAR(clear_module_state->__pyx_n_s_import);
jpayne@68 4325 Py_CLEAR(clear_module_state->__pyx_n_s_init);
jpayne@68 4326 Py_CLEAR(clear_module_state->__pyx_n_s_init_subclass);
jpayne@68 4327 Py_CLEAR(clear_module_state->__pyx_n_s_initializing);
jpayne@68 4328 Py_CLEAR(clear_module_state->__pyx_kp_u_invalid_contig_s);
jpayne@68 4329 Py_CLEAR(clear_module_state->__pyx_kp_u_invalid_coordinates_start_i_stop);
jpayne@68 4330 Py_CLEAR(clear_module_state->__pyx_kp_u_invalid_tid);
jpayne@68 4331 Py_CLEAR(clear_module_state->__pyx_n_s_io);
jpayne@68 4332 Py_CLEAR(clear_module_state->__pyx_n_s_is_coroutine);
jpayne@68 4333 Py_CLEAR(clear_module_state->__pyx_n_s_is_open);
jpayne@68 4334 Py_CLEAR(clear_module_state->__pyx_n_s_is_valid_reference_name);
jpayne@68 4335 Py_CLEAR(clear_module_state->__pyx_n_s_is_valid_tid);
jpayne@68 4336 Py_CLEAR(clear_module_state->__pyx_n_s_isatty);
jpayne@68 4337 Py_CLEAR(clear_module_state->__pyx_kp_u_isenabled);
jpayne@68 4338 Py_CLEAR(clear_module_state->__pyx_n_s_join);
jpayne@68 4339 Py_CLEAR(clear_module_state->__pyx_n_s_line);
jpayne@68 4340 Py_CLEAR(clear_module_state->__pyx_n_s_lines);
jpayne@68 4341 Py_CLEAR(clear_module_state->__pyx_n_s_main);
jpayne@68 4342 Py_CLEAR(clear_module_state->__pyx_n_s_metaclass);
jpayne@68 4343 Py_CLEAR(clear_module_state->__pyx_kp_u_metadata_not_available_on_closed);
jpayne@68 4344 Py_CLEAR(clear_module_state->__pyx_n_s_mode);
jpayne@68 4345 Py_CLEAR(clear_module_state->__pyx_n_s_module);
jpayne@68 4346 Py_CLEAR(clear_module_state->__pyx_n_s_mro_entries);
jpayne@68 4347 Py_CLEAR(clear_module_state->__pyx_n_s_msg);
jpayne@68 4348 Py_CLEAR(clear_module_state->__pyx_n_s_mv);
jpayne@68 4349 Py_CLEAR(clear_module_state->__pyx_n_s_name);
jpayne@68 4350 Py_CLEAR(clear_module_state->__pyx_n_s_name_2);
jpayne@68 4351 Py_CLEAR(clear_module_state->__pyx_n_s_ne);
jpayne@68 4352 Py_CLEAR(clear_module_state->__pyx_kp_u_no_BGZF_EOF_marker_file_may_be_t);
jpayne@68 4353 Py_CLEAR(clear_module_state->__pyx_kp_s_no_default___reduce___due_to_non);
jpayne@68 4354 Py_CLEAR(clear_module_state->__pyx_n_s_nonzero);
jpayne@68 4355 Py_CLEAR(clear_module_state->__pyx_n_s_object);
jpayne@68 4356 Py_CLEAR(clear_module_state->__pyx_n_s_off);
jpayne@68 4357 Py_CLEAR(clear_module_state->__pyx_n_s_offset);
jpayne@68 4358 Py_CLEAR(clear_module_state->__pyx_kp_u_operation_on_closed_HFile);
jpayne@68 4359 Py_CLEAR(clear_module_state->__pyx_n_s_opts);
jpayne@68 4360 Py_CLEAR(clear_module_state->__pyx_n_s_os);
jpayne@68 4361 Py_CLEAR(clear_module_state->__pyx_n_s_other);
jpayne@68 4362 Py_CLEAR(clear_module_state->__pyx_n_s_parse_region);
jpayne@68 4363 Py_CLEAR(clear_module_state->__pyx_n_s_part);
jpayne@68 4364 Py_CLEAR(clear_module_state->__pyx_n_s_parts);
jpayne@68 4365 Py_CLEAR(clear_module_state->__pyx_n_s_prepare);
jpayne@68 4366 Py_CLEAR(clear_module_state->__pyx_n_s_pysam_libchtslib);
jpayne@68 4367 Py_CLEAR(clear_module_state->__pyx_kp_s_pysam_libchtslib_pyx);
jpayne@68 4368 Py_CLEAR(clear_module_state->__pyx_n_s_pyx_state);
jpayne@68 4369 Py_CLEAR(clear_module_state->__pyx_n_s_pyx_vtable);
jpayne@68 4370 Py_CLEAR(clear_module_state->__pyx_n_s_qualname);
jpayne@68 4371 Py_CLEAR(clear_module_state->__pyx_n_u_r);
jpayne@68 4372 Py_CLEAR(clear_module_state->__pyx_n_s_re);
jpayne@68 4373 Py_CLEAR(clear_module_state->__pyx_n_s_read);
jpayne@68 4374 Py_CLEAR(clear_module_state->__pyx_n_s_readable);
jpayne@68 4375 Py_CLEAR(clear_module_state->__pyx_n_s_readall);
jpayne@68 4376 Py_CLEAR(clear_module_state->__pyx_n_s_readinto);
jpayne@68 4377 Py_CLEAR(clear_module_state->__pyx_n_s_readline);
jpayne@68 4378 Py_CLEAR(clear_module_state->__pyx_n_s_readlines);
jpayne@68 4379 Py_CLEAR(clear_module_state->__pyx_n_s_reduce);
jpayne@68 4380 Py_CLEAR(clear_module_state->__pyx_n_s_reduce_cython);
jpayne@68 4381 Py_CLEAR(clear_module_state->__pyx_n_s_reduce_ex);
jpayne@68 4382 Py_CLEAR(clear_module_state->__pyx_n_s_reference);
jpayne@68 4383 Py_CLEAR(clear_module_state->__pyx_n_s_region);
jpayne@68 4384 Py_CLEAR(clear_module_state->__pyx_n_s_replace);
jpayne@68 4385 Py_CLEAR(clear_module_state->__pyx_n_s_reset);
jpayne@68 4386 Py_CLEAR(clear_module_state->__pyx_n_s_ret);
jpayne@68 4387 Py_CLEAR(clear_module_state->__pyx_n_s_rstart);
jpayne@68 4388 Py_CLEAR(clear_module_state->__pyx_n_s_rstop);
jpayne@68 4389 Py_CLEAR(clear_module_state->__pyx_n_s_rtid);
jpayne@68 4390 Py_CLEAR(clear_module_state->__pyx_n_s_rval);
jpayne@68 4391 Py_CLEAR(clear_module_state->__pyx_n_s_seek);
jpayne@68 4392 Py_CLEAR(clear_module_state->__pyx_kp_u_seek_failed_on_HFile);
jpayne@68 4393 Py_CLEAR(clear_module_state->__pyx_kp_u_seek_not_available_in_streams);
jpayne@68 4394 Py_CLEAR(clear_module_state->__pyx_kp_u_seek_not_implemented_in_files_co);
jpayne@68 4395 Py_CLEAR(clear_module_state->__pyx_n_s_seekable);
jpayne@68 4396 Py_CLEAR(clear_module_state->__pyx_n_s_self);
jpayne@68 4397 Py_CLEAR(clear_module_state->__pyx_kp_s_self_fp_cannot_be_converted_to_a);
jpayne@68 4398 Py_CLEAR(clear_module_state->__pyx_n_s_set_name);
jpayne@68 4399 Py_CLEAR(clear_module_state->__pyx_n_s_set_verbosity);
jpayne@68 4400 Py_CLEAR(clear_module_state->__pyx_n_u_set_verbosity);
jpayne@68 4401 Py_CLEAR(clear_module_state->__pyx_n_s_setstate);
jpayne@68 4402 Py_CLEAR(clear_module_state->__pyx_n_s_setstate_cython);
jpayne@68 4403 Py_CLEAR(clear_module_state->__pyx_n_s_size);
jpayne@68 4404 Py_CLEAR(clear_module_state->__pyx_n_s_spec);
jpayne@68 4405 Py_CLEAR(clear_module_state->__pyx_n_s_split);
jpayne@68 4406 Py_CLEAR(clear_module_state->__pyx_n_s_start);
jpayne@68 4407 Py_CLEAR(clear_module_state->__pyx_kp_u_start_out_of_range_i);
jpayne@68 4408 Py_CLEAR(clear_module_state->__pyx_n_s_stop);
jpayne@68 4409 Py_CLEAR(clear_module_state->__pyx_kp_u_stop_and_end_should_not_both_be);
jpayne@68 4410 Py_CLEAR(clear_module_state->__pyx_kp_u_stop_out_of_range_i);
jpayne@68 4411 Py_CLEAR(clear_module_state->__pyx_kp_s_stringsource);
jpayne@68 4412 Py_CLEAR(clear_module_state->__pyx_n_s_super);
jpayne@68 4413 Py_CLEAR(clear_module_state->__pyx_n_s_tb);
jpayne@68 4414 Py_CLEAR(clear_module_state->__pyx_n_s_tell);
jpayne@68 4415 Py_CLEAR(clear_module_state->__pyx_kp_u_tell_failed_on_HFile);
jpayne@68 4416 Py_CLEAR(clear_module_state->__pyx_kp_u_tell_not_available_in_streams);
jpayne@68 4417 Py_CLEAR(clear_module_state->__pyx_n_s_test);
jpayne@68 4418 Py_CLEAR(clear_module_state->__pyx_n_s_tid);
jpayne@68 4419 Py_CLEAR(clear_module_state->__pyx_n_s_traceback);
jpayne@68 4420 Py_CLEAR(clear_module_state->__pyx_n_s_truncate);
jpayne@68 4421 Py_CLEAR(clear_module_state->__pyx_n_s_type);
jpayne@68 4422 Py_CLEAR(clear_module_state->__pyx_n_s_value);
jpayne@68 4423 Py_CLEAR(clear_module_state->__pyx_n_s_verbosity);
jpayne@68 4424 Py_CLEAR(clear_module_state->__pyx_n_u_w);
jpayne@68 4425 Py_CLEAR(clear_module_state->__pyx_n_s_warn);
jpayne@68 4426 Py_CLEAR(clear_module_state->__pyx_n_s_warnings);
jpayne@68 4427 Py_CLEAR(clear_module_state->__pyx_n_s_whence);
jpayne@68 4428 Py_CLEAR(clear_module_state->__pyx_n_s_writable);
jpayne@68 4429 Py_CLEAR(clear_module_state->__pyx_n_s_write);
jpayne@68 4430 Py_CLEAR(clear_module_state->__pyx_kp_u_write_failed_on_HFile);
jpayne@68 4431 Py_CLEAR(clear_module_state->__pyx_n_s_writelines);
jpayne@68 4432 Py_CLEAR(clear_module_state->__pyx_int_0);
jpayne@68 4433 Py_CLEAR(clear_module_state->__pyx_int_1);
jpayne@68 4434 Py_CLEAR(clear_module_state->__pyx_int_neg_1);
jpayne@68 4435 Py_CLEAR(clear_module_state->__pyx_codeobj_);
jpayne@68 4436 Py_CLEAR(clear_module_state->__pyx_tuple__5);
jpayne@68 4437 Py_CLEAR(clear_module_state->__pyx_tuple__6);
jpayne@68 4438 Py_CLEAR(clear_module_state->__pyx_tuple__39);
jpayne@68 4439 Py_CLEAR(clear_module_state->__pyx_tuple__43);
jpayne@68 4440 Py_CLEAR(clear_module_state->__pyx_tuple__44);
jpayne@68 4441 Py_CLEAR(clear_module_state->__pyx_tuple__46);
jpayne@68 4442 Py_CLEAR(clear_module_state->__pyx_tuple__47);
jpayne@68 4443 Py_CLEAR(clear_module_state->__pyx_tuple__48);
jpayne@68 4444 Py_CLEAR(clear_module_state->__pyx_tuple__49);
jpayne@68 4445 Py_CLEAR(clear_module_state->__pyx_tuple__51);
jpayne@68 4446 Py_CLEAR(clear_module_state->__pyx_tuple__53);
jpayne@68 4447 Py_CLEAR(clear_module_state->__pyx_tuple__54);
jpayne@68 4448 Py_CLEAR(clear_module_state->__pyx_tuple__57);
jpayne@68 4449 Py_CLEAR(clear_module_state->__pyx_tuple__66);
jpayne@68 4450 Py_CLEAR(clear_module_state->__pyx_tuple__67);
jpayne@68 4451 Py_CLEAR(clear_module_state->__pyx_tuple__68);
jpayne@68 4452 Py_CLEAR(clear_module_state->__pyx_tuple__69);
jpayne@68 4453 Py_CLEAR(clear_module_state->__pyx_tuple__70);
jpayne@68 4454 Py_CLEAR(clear_module_state->__pyx_tuple__71);
jpayne@68 4455 Py_CLEAR(clear_module_state->__pyx_tuple__72);
jpayne@68 4456 Py_CLEAR(clear_module_state->__pyx_tuple__73);
jpayne@68 4457 Py_CLEAR(clear_module_state->__pyx_tuple__74);
jpayne@68 4458 Py_CLEAR(clear_module_state->__pyx_tuple__75);
jpayne@68 4459 Py_CLEAR(clear_module_state->__pyx_tuple__76);
jpayne@68 4460 Py_CLEAR(clear_module_state->__pyx_tuple__77);
jpayne@68 4461 Py_CLEAR(clear_module_state->__pyx_tuple__78);
jpayne@68 4462 Py_CLEAR(clear_module_state->__pyx_tuple__79);
jpayne@68 4463 Py_CLEAR(clear_module_state->__pyx_tuple__80);
jpayne@68 4464 Py_CLEAR(clear_module_state->__pyx_tuple__81);
jpayne@68 4465 Py_CLEAR(clear_module_state->__pyx_tuple__82);
jpayne@68 4466 Py_CLEAR(clear_module_state->__pyx_tuple__83);
jpayne@68 4467 Py_CLEAR(clear_module_state->__pyx_tuple__84);
jpayne@68 4468 Py_CLEAR(clear_module_state->__pyx_tuple__85);
jpayne@68 4469 Py_CLEAR(clear_module_state->__pyx_tuple__86);
jpayne@68 4470 Py_CLEAR(clear_module_state->__pyx_tuple__87);
jpayne@68 4471 Py_CLEAR(clear_module_state->__pyx_tuple__88);
jpayne@68 4472 Py_CLEAR(clear_module_state->__pyx_tuple__89);
jpayne@68 4473 Py_CLEAR(clear_module_state->__pyx_tuple__90);
jpayne@68 4474 Py_CLEAR(clear_module_state->__pyx_tuple__91);
jpayne@68 4475 Py_CLEAR(clear_module_state->__pyx_tuple__92);
jpayne@68 4476 Py_CLEAR(clear_module_state->__pyx_tuple__93);
jpayne@68 4477 Py_CLEAR(clear_module_state->__pyx_tuple__94);
jpayne@68 4478 Py_CLEAR(clear_module_state->__pyx_tuple__95);
jpayne@68 4479 Py_CLEAR(clear_module_state->__pyx_tuple__96);
jpayne@68 4480 Py_CLEAR(clear_module_state->__pyx_codeobj__2);
jpayne@68 4481 Py_CLEAR(clear_module_state->__pyx_codeobj__3);
jpayne@68 4482 Py_CLEAR(clear_module_state->__pyx_codeobj__4);
jpayne@68 4483 Py_CLEAR(clear_module_state->__pyx_codeobj__7);
jpayne@68 4484 Py_CLEAR(clear_module_state->__pyx_codeobj__8);
jpayne@68 4485 Py_CLEAR(clear_module_state->__pyx_codeobj__9);
jpayne@68 4486 Py_CLEAR(clear_module_state->__pyx_codeobj__10);
jpayne@68 4487 Py_CLEAR(clear_module_state->__pyx_codeobj__11);
jpayne@68 4488 Py_CLEAR(clear_module_state->__pyx_codeobj__12);
jpayne@68 4489 Py_CLEAR(clear_module_state->__pyx_codeobj__14);
jpayne@68 4490 Py_CLEAR(clear_module_state->__pyx_codeobj__15);
jpayne@68 4491 Py_CLEAR(clear_module_state->__pyx_codeobj__16);
jpayne@68 4492 Py_CLEAR(clear_module_state->__pyx_codeobj__17);
jpayne@68 4493 Py_CLEAR(clear_module_state->__pyx_codeobj__19);
jpayne@68 4494 Py_CLEAR(clear_module_state->__pyx_codeobj__20);
jpayne@68 4495 Py_CLEAR(clear_module_state->__pyx_codeobj__21);
jpayne@68 4496 Py_CLEAR(clear_module_state->__pyx_codeobj__22);
jpayne@68 4497 Py_CLEAR(clear_module_state->__pyx_codeobj__23);
jpayne@68 4498 Py_CLEAR(clear_module_state->__pyx_codeobj__24);
jpayne@68 4499 Py_CLEAR(clear_module_state->__pyx_codeobj__25);
jpayne@68 4500 Py_CLEAR(clear_module_state->__pyx_codeobj__26);
jpayne@68 4501 Py_CLEAR(clear_module_state->__pyx_codeobj__27);
jpayne@68 4502 Py_CLEAR(clear_module_state->__pyx_codeobj__28);
jpayne@68 4503 Py_CLEAR(clear_module_state->__pyx_codeobj__29);
jpayne@68 4504 Py_CLEAR(clear_module_state->__pyx_codeobj__30);
jpayne@68 4505 Py_CLEAR(clear_module_state->__pyx_codeobj__31);
jpayne@68 4506 Py_CLEAR(clear_module_state->__pyx_codeobj__32);
jpayne@68 4507 Py_CLEAR(clear_module_state->__pyx_codeobj__33);
jpayne@68 4508 Py_CLEAR(clear_module_state->__pyx_codeobj__34);
jpayne@68 4509 Py_CLEAR(clear_module_state->__pyx_codeobj__35);
jpayne@68 4510 Py_CLEAR(clear_module_state->__pyx_codeobj__36);
jpayne@68 4511 Py_CLEAR(clear_module_state->__pyx_codeobj__37);
jpayne@68 4512 Py_CLEAR(clear_module_state->__pyx_codeobj__38);
jpayne@68 4513 Py_CLEAR(clear_module_state->__pyx_codeobj__40);
jpayne@68 4514 Py_CLEAR(clear_module_state->__pyx_codeobj__42);
jpayne@68 4515 Py_CLEAR(clear_module_state->__pyx_codeobj__45);
jpayne@68 4516 Py_CLEAR(clear_module_state->__pyx_codeobj__50);
jpayne@68 4517 Py_CLEAR(clear_module_state->__pyx_codeobj__52);
jpayne@68 4518 Py_CLEAR(clear_module_state->__pyx_codeobj__60);
jpayne@68 4519 Py_CLEAR(clear_module_state->__pyx_codeobj__61);
jpayne@68 4520 Py_CLEAR(clear_module_state->__pyx_codeobj__62);
jpayne@68 4521 Py_CLEAR(clear_module_state->__pyx_codeobj__63);
jpayne@68 4522 Py_CLEAR(clear_module_state->__pyx_codeobj__64);
jpayne@68 4523 Py_CLEAR(clear_module_state->__pyx_codeobj__65);
jpayne@68 4524 return 0;
jpayne@68 4525 }
jpayne@68 4526 #endif
jpayne@68 4527 /* #### Code section: module_state_traverse ### */
jpayne@68 4528 #if CYTHON_USE_MODULE_STATE
jpayne@68 4529 static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) {
jpayne@68 4530 __pyx_mstate *traverse_module_state = __pyx_mstate(m);
jpayne@68 4531 if (!traverse_module_state) return 0;
jpayne@68 4532 Py_VISIT(traverse_module_state->__pyx_d);
jpayne@68 4533 Py_VISIT(traverse_module_state->__pyx_b);
jpayne@68 4534 Py_VISIT(traverse_module_state->__pyx_cython_runtime);
jpayne@68 4535 Py_VISIT(traverse_module_state->__pyx_empty_tuple);
jpayne@68 4536 Py_VISIT(traverse_module_state->__pyx_empty_bytes);
jpayne@68 4537 Py_VISIT(traverse_module_state->__pyx_empty_unicode);
jpayne@68 4538 #ifdef __Pyx_CyFunction_USED
jpayne@68 4539 Py_VISIT(traverse_module_state->__pyx_CyFunctionType);
jpayne@68 4540 #endif
jpayne@68 4541 #ifdef __Pyx_FusedFunction_USED
jpayne@68 4542 Py_VISIT(traverse_module_state->__pyx_FusedFunctionType);
jpayne@68 4543 #endif
jpayne@68 4544 Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_4type_type);
jpayne@68 4545 Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_4bool_bool);
jpayne@68 4546 Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_7complex_complex);
jpayne@68 4547 Py_VISIT(traverse_module_state->__pyx_ptype_7cpython_5array_array);
jpayne@68 4548 Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_10libchtslib_HTSFile);
jpayne@68 4549 Py_VISIT(traverse_module_state->__pyx_type_5pysam_10libchtslib_HTSFile);
jpayne@68 4550 Py_VISIT(traverse_module_state->__pyx_ptype_5pysam_10libchtslib_HFile);
jpayne@68 4551 Py_VISIT(traverse_module_state->__pyx_type_5pysam_10libchtslib_HFile);
jpayne@68 4552 Py_VISIT(traverse_module_state->__pyx_n_u_ALIGNMENTS);
jpayne@68 4553 Py_VISIT(traverse_module_state->__pyx_kp_u_An_error_occurred_while_applying);
jpayne@68 4554 Py_VISIT(traverse_module_state->__pyx_n_s_AttributeError);
jpayne@68 4555 Py_VISIT(traverse_module_state->__pyx_n_u_BAI);
jpayne@68 4556 Py_VISIT(traverse_module_state->__pyx_n_u_BAM);
jpayne@68 4557 Py_VISIT(traverse_module_state->__pyx_n_u_BCF);
jpayne@68 4558 Py_VISIT(traverse_module_state->__pyx_n_u_BED);
jpayne@68 4559 Py_VISIT(traverse_module_state->__pyx_n_u_BGZF);
jpayne@68 4560 Py_VISIT(traverse_module_state->__pyx_n_u_BINARY_FORMAT);
jpayne@68 4561 Py_VISIT(traverse_module_state->__pyx_n_s_CFalse);
jpayne@68 4562 Py_VISIT(traverse_module_state->__pyx_n_u_CRAI);
jpayne@68 4563 Py_VISIT(traverse_module_state->__pyx_n_u_CRAM);
jpayne@68 4564 Py_VISIT(traverse_module_state->__pyx_n_u_CSI);
jpayne@68 4565 Py_VISIT(traverse_module_state->__pyx_n_s_CTrue);
jpayne@68 4566 Py_VISIT(traverse_module_state->__pyx_n_u_CUSTOM);
jpayne@68 4567 Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue);
jpayne@68 4568 Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue___bool);
jpayne@68 4569 Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue___call);
jpayne@68 4570 Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue___eq);
jpayne@68 4571 Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue___init);
jpayne@68 4572 Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue___ne);
jpayne@68 4573 Py_VISIT(traverse_module_state->__pyx_n_s_CallableValue___nonzero);
jpayne@68 4574 Py_VISIT(traverse_module_state->__pyx_kp_u_Cannot_create_hfile);
jpayne@68 4575 Py_VISIT(traverse_module_state->__pyx_kp_u_Flushing);
jpayne@68 4576 Py_VISIT(traverse_module_state->__pyx_n_u_GZI);
jpayne@68 4577 Py_VISIT(traverse_module_state->__pyx_n_u_GZIP);
jpayne@68 4578 Py_VISIT(traverse_module_state->__pyx_n_s_HFile);
jpayne@68 4579 Py_VISIT(traverse_module_state->__pyx_n_u_HFile);
jpayne@68 4580 Py_VISIT(traverse_module_state->__pyx_n_s_HFile___enter);
jpayne@68 4581 Py_VISIT(traverse_module_state->__pyx_n_s_HFile___exit);
jpayne@68 4582 Py_VISIT(traverse_module_state->__pyx_n_s_HFile___reduce_cython);
jpayne@68 4583 Py_VISIT(traverse_module_state->__pyx_n_s_HFile___setstate_cython);
jpayne@68 4584 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_close);
jpayne@68 4585 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_fileno);
jpayne@68 4586 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_flush);
jpayne@68 4587 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_isatty);
jpayne@68 4588 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_read);
jpayne@68 4589 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_readable);
jpayne@68 4590 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_readall);
jpayne@68 4591 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_readinto);
jpayne@68 4592 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_readline);
jpayne@68 4593 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_readlines);
jpayne@68 4594 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_seek);
jpayne@68 4595 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_seekable);
jpayne@68 4596 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_tell);
jpayne@68 4597 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_truncate);
jpayne@68 4598 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_writable);
jpayne@68 4599 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_write);
jpayne@68 4600 Py_VISIT(traverse_module_state->__pyx_n_s_HFile_writelines);
jpayne@68 4601 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile);
jpayne@68 4602 Py_VISIT(traverse_module_state->__pyx_n_u_HTSFile);
jpayne@68 4603 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile___enter);
jpayne@68 4604 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile___exit);
jpayne@68 4605 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile___reduce_cython);
jpayne@68 4606 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile___setstate_cython);
jpayne@68 4607 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_add_hts_options);
jpayne@68 4608 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_check_truncation);
jpayne@68 4609 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_close);
jpayne@68 4610 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_flush);
jpayne@68 4611 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_get_reference_name);
jpayne@68 4612 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_get_tid);
jpayne@68 4613 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_is_valid_reference_name);
jpayne@68 4614 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_is_valid_tid);
jpayne@68 4615 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_parse_region);
jpayne@68 4616 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_reset);
jpayne@68 4617 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_seek);
jpayne@68 4618 Py_VISIT(traverse_module_state->__pyx_n_s_HTSFile_tell);
jpayne@68 4619 Py_VISIT(traverse_module_state->__pyx_n_u_INDEX);
jpayne@68 4620 Py_VISIT(traverse_module_state->__pyx_n_s_IOError);
jpayne@68 4621 Py_VISIT(traverse_module_state->__pyx_kp_u_I_O_operation_on_closed_file);
jpayne@68 4622 Py_VISIT(traverse_module_state->__pyx_n_s_IndexError);
jpayne@68 4623 Py_VISIT(traverse_module_state->__pyx_kp_u_Invalid_format_option_specified);
jpayne@68 4624 Py_VISIT(traverse_module_state->__pyx_n_s_MemoryError);
jpayne@68 4625 Py_VISIT(traverse_module_state->__pyx_n_u_NONE);
jpayne@68 4626 Py_VISIT(traverse_module_state->__pyx_n_s_NotImplementedError);
jpayne@68 4627 Py_VISIT(traverse_module_state->__pyx_n_s_OSError);
jpayne@68 4628 Py_VISIT(traverse_module_state->__pyx_n_s_OverflowError);
jpayne@68 4629 Py_VISIT(traverse_module_state->__pyx_n_u_REGIONS);
jpayne@68 4630 Py_VISIT(traverse_module_state->__pyx_n_s_RuntimeError);
jpayne@68 4631 Py_VISIT(traverse_module_state->__pyx_n_u_SAM);
jpayne@68 4632 Py_VISIT(traverse_module_state->__pyx_n_s_SEEK_SET);
jpayne@68 4633 Py_VISIT(traverse_module_state->__pyx_n_s_StopIteration);
jpayne@68 4634 Py_VISIT(traverse_module_state->__pyx_n_u_TBI);
jpayne@68 4635 Py_VISIT(traverse_module_state->__pyx_n_u_TEXT_FORMAT);
jpayne@68 4636 Py_VISIT(traverse_module_state->__pyx_n_s_TypeError);
jpayne@68 4637 Py_VISIT(traverse_module_state->__pyx_n_u_UNKNOWN);
jpayne@68 4638 Py_VISIT(traverse_module_state->__pyx_n_u_VARIANTS);
jpayne@68 4639 Py_VISIT(traverse_module_state->__pyx_n_u_VCF);
jpayne@68 4640 Py_VISIT(traverse_module_state->__pyx_n_s_ValueError);
jpayne@68 4641 Py_VISIT(traverse_module_state->__pyx_kp_b__13);
jpayne@68 4642 Py_VISIT(traverse_module_state->__pyx_kp_u__55);
jpayne@68 4643 Py_VISIT(traverse_module_state->__pyx_kp_u__56);
jpayne@68 4644 Py_VISIT(traverse_module_state->__pyx_n_s__58);
jpayne@68 4645 Py_VISIT(traverse_module_state->__pyx_kp_u__58);
jpayne@68 4646 Py_VISIT(traverse_module_state->__pyx_kp_u__59);
jpayne@68 4647 Py_VISIT(traverse_module_state->__pyx_n_s__97);
jpayne@68 4648 Py_VISIT(traverse_module_state->__pyx_n_s_add_hts_options);
jpayne@68 4649 Py_VISIT(traverse_module_state->__pyx_n_s_all);
jpayne@68 4650 Py_VISIT(traverse_module_state->__pyx_n_s_asyncio_coroutines);
jpayne@68 4651 Py_VISIT(traverse_module_state->__pyx_n_b_b);
jpayne@68 4652 Py_VISIT(traverse_module_state->__pyx_n_s_b);
jpayne@68 4653 Py_VISIT(traverse_module_state->__pyx_n_s_bgzfp);
jpayne@68 4654 Py_VISIT(traverse_module_state->__pyx_n_s_bool);
jpayne@68 4655 Py_VISIT(traverse_module_state->__pyx_n_s_buf);
jpayne@68 4656 Py_VISIT(traverse_module_state->__pyx_n_s_bytes_read);
jpayne@68 4657 Py_VISIT(traverse_module_state->__pyx_n_b_c);
jpayne@68 4658 Py_VISIT(traverse_module_state->__pyx_n_s_call);
jpayne@68 4659 Py_VISIT(traverse_module_state->__pyx_n_s_check_truncation);
jpayne@68 4660 Py_VISIT(traverse_module_state->__pyx_n_s_chunk_size);
jpayne@68 4661 Py_VISIT(traverse_module_state->__pyx_n_s_class_getitem);
jpayne@68 4662 Py_VISIT(traverse_module_state->__pyx_n_s_cline_in_traceback);
jpayne@68 4663 Py_VISIT(traverse_module_state->__pyx_n_s_close);
jpayne@68 4664 Py_VISIT(traverse_module_state->__pyx_n_s_closefd);
jpayne@68 4665 Py_VISIT(traverse_module_state->__pyx_n_s_contig);
jpayne@68 4666 Py_VISIT(traverse_module_state->__pyx_kp_u_contig_and_reference_should_not);
jpayne@68 4667 Py_VISIT(traverse_module_state->__pyx_n_s_coord);
jpayne@68 4668 Py_VISIT(traverse_module_state->__pyx_n_s_cpart);
jpayne@68 4669 Py_VISIT(traverse_module_state->__pyx_n_s_dict);
jpayne@68 4670 Py_VISIT(traverse_module_state->__pyx_kp_u_disable);
jpayne@68 4671 Py_VISIT(traverse_module_state->__pyx_n_s_doc);
jpayne@68 4672 Py_VISIT(traverse_module_state->__pyx_kp_u_enable);
jpayne@68 4673 Py_VISIT(traverse_module_state->__pyx_n_s_end);
jpayne@68 4674 Py_VISIT(traverse_module_state->__pyx_n_s_enter);
jpayne@68 4675 Py_VISIT(traverse_module_state->__pyx_n_s_eq);
jpayne@68 4676 Py_VISIT(traverse_module_state->__pyx_kp_u_error_checking_for_EOF_marker);
jpayne@68 4677 Py_VISIT(traverse_module_state->__pyx_n_s_exc_type);
jpayne@68 4678 Py_VISIT(traverse_module_state->__pyx_n_s_exc_value);
jpayne@68 4679 Py_VISIT(traverse_module_state->__pyx_n_s_exit);
jpayne@68 4680 Py_VISIT(traverse_module_state->__pyx_kp_u_failed);
jpayne@68 4681 Py_VISIT(traverse_module_state->__pyx_kp_u_failed_to_close_HFile);
jpayne@68 4682 Py_VISIT(traverse_module_state->__pyx_kp_u_failed_to_flush_HFile);
jpayne@68 4683 Py_VISIT(traverse_module_state->__pyx_kp_u_failed_to_open_HFile);
jpayne@68 4684 Py_VISIT(traverse_module_state->__pyx_kp_u_failed_to_read_HFile);
jpayne@68 4685 Py_VISIT(traverse_module_state->__pyx_kp_u_fd);
jpayne@68 4686 Py_VISIT(traverse_module_state->__pyx_n_s_fileno);
jpayne@68 4687 Py_VISIT(traverse_module_state->__pyx_kp_u_fileno_not_available);
jpayne@68 4688 Py_VISIT(traverse_module_state->__pyx_n_s_flush);
jpayne@68 4689 Py_VISIT(traverse_module_state->__pyx_n_s_format);
jpayne@68 4690 Py_VISIT(traverse_module_state->__pyx_n_s_format_option);
jpayne@68 4691 Py_VISIT(traverse_module_state->__pyx_n_s_format_options);
jpayne@68 4692 Py_VISIT(traverse_module_state->__pyx_n_s_fp);
jpayne@68 4693 Py_VISIT(traverse_module_state->__pyx_kp_u_gc);
jpayne@68 4694 Py_VISIT(traverse_module_state->__pyx_n_s_get_reference_name);
jpayne@68 4695 Py_VISIT(traverse_module_state->__pyx_n_s_get_tid);
jpayne@68 4696 Py_VISIT(traverse_module_state->__pyx_n_s_get_verbosity);
jpayne@68 4697 Py_VISIT(traverse_module_state->__pyx_n_u_get_verbosity);
jpayne@68 4698 Py_VISIT(traverse_module_state->__pyx_n_s_getstate);
jpayne@68 4699 Py_VISIT(traverse_module_state->__pyx_n_s_got);
jpayne@68 4700 Py_VISIT(traverse_module_state->__pyx_n_s_ignore_truncation);
jpayne@68 4701 Py_VISIT(traverse_module_state->__pyx_n_s_import);
jpayne@68 4702 Py_VISIT(traverse_module_state->__pyx_n_s_init);
jpayne@68 4703 Py_VISIT(traverse_module_state->__pyx_n_s_init_subclass);
jpayne@68 4704 Py_VISIT(traverse_module_state->__pyx_n_s_initializing);
jpayne@68 4705 Py_VISIT(traverse_module_state->__pyx_kp_u_invalid_contig_s);
jpayne@68 4706 Py_VISIT(traverse_module_state->__pyx_kp_u_invalid_coordinates_start_i_stop);
jpayne@68 4707 Py_VISIT(traverse_module_state->__pyx_kp_u_invalid_tid);
jpayne@68 4708 Py_VISIT(traverse_module_state->__pyx_n_s_io);
jpayne@68 4709 Py_VISIT(traverse_module_state->__pyx_n_s_is_coroutine);
jpayne@68 4710 Py_VISIT(traverse_module_state->__pyx_n_s_is_open);
jpayne@68 4711 Py_VISIT(traverse_module_state->__pyx_n_s_is_valid_reference_name);
jpayne@68 4712 Py_VISIT(traverse_module_state->__pyx_n_s_is_valid_tid);
jpayne@68 4713 Py_VISIT(traverse_module_state->__pyx_n_s_isatty);
jpayne@68 4714 Py_VISIT(traverse_module_state->__pyx_kp_u_isenabled);
jpayne@68 4715 Py_VISIT(traverse_module_state->__pyx_n_s_join);
jpayne@68 4716 Py_VISIT(traverse_module_state->__pyx_n_s_line);
jpayne@68 4717 Py_VISIT(traverse_module_state->__pyx_n_s_lines);
jpayne@68 4718 Py_VISIT(traverse_module_state->__pyx_n_s_main);
jpayne@68 4719 Py_VISIT(traverse_module_state->__pyx_n_s_metaclass);
jpayne@68 4720 Py_VISIT(traverse_module_state->__pyx_kp_u_metadata_not_available_on_closed);
jpayne@68 4721 Py_VISIT(traverse_module_state->__pyx_n_s_mode);
jpayne@68 4722 Py_VISIT(traverse_module_state->__pyx_n_s_module);
jpayne@68 4723 Py_VISIT(traverse_module_state->__pyx_n_s_mro_entries);
jpayne@68 4724 Py_VISIT(traverse_module_state->__pyx_n_s_msg);
jpayne@68 4725 Py_VISIT(traverse_module_state->__pyx_n_s_mv);
jpayne@68 4726 Py_VISIT(traverse_module_state->__pyx_n_s_name);
jpayne@68 4727 Py_VISIT(traverse_module_state->__pyx_n_s_name_2);
jpayne@68 4728 Py_VISIT(traverse_module_state->__pyx_n_s_ne);
jpayne@68 4729 Py_VISIT(traverse_module_state->__pyx_kp_u_no_BGZF_EOF_marker_file_may_be_t);
jpayne@68 4730 Py_VISIT(traverse_module_state->__pyx_kp_s_no_default___reduce___due_to_non);
jpayne@68 4731 Py_VISIT(traverse_module_state->__pyx_n_s_nonzero);
jpayne@68 4732 Py_VISIT(traverse_module_state->__pyx_n_s_object);
jpayne@68 4733 Py_VISIT(traverse_module_state->__pyx_n_s_off);
jpayne@68 4734 Py_VISIT(traverse_module_state->__pyx_n_s_offset);
jpayne@68 4735 Py_VISIT(traverse_module_state->__pyx_kp_u_operation_on_closed_HFile);
jpayne@68 4736 Py_VISIT(traverse_module_state->__pyx_n_s_opts);
jpayne@68 4737 Py_VISIT(traverse_module_state->__pyx_n_s_os);
jpayne@68 4738 Py_VISIT(traverse_module_state->__pyx_n_s_other);
jpayne@68 4739 Py_VISIT(traverse_module_state->__pyx_n_s_parse_region);
jpayne@68 4740 Py_VISIT(traverse_module_state->__pyx_n_s_part);
jpayne@68 4741 Py_VISIT(traverse_module_state->__pyx_n_s_parts);
jpayne@68 4742 Py_VISIT(traverse_module_state->__pyx_n_s_prepare);
jpayne@68 4743 Py_VISIT(traverse_module_state->__pyx_n_s_pysam_libchtslib);
jpayne@68 4744 Py_VISIT(traverse_module_state->__pyx_kp_s_pysam_libchtslib_pyx);
jpayne@68 4745 Py_VISIT(traverse_module_state->__pyx_n_s_pyx_state);
jpayne@68 4746 Py_VISIT(traverse_module_state->__pyx_n_s_pyx_vtable);
jpayne@68 4747 Py_VISIT(traverse_module_state->__pyx_n_s_qualname);
jpayne@68 4748 Py_VISIT(traverse_module_state->__pyx_n_u_r);
jpayne@68 4749 Py_VISIT(traverse_module_state->__pyx_n_s_re);
jpayne@68 4750 Py_VISIT(traverse_module_state->__pyx_n_s_read);
jpayne@68 4751 Py_VISIT(traverse_module_state->__pyx_n_s_readable);
jpayne@68 4752 Py_VISIT(traverse_module_state->__pyx_n_s_readall);
jpayne@68 4753 Py_VISIT(traverse_module_state->__pyx_n_s_readinto);
jpayne@68 4754 Py_VISIT(traverse_module_state->__pyx_n_s_readline);
jpayne@68 4755 Py_VISIT(traverse_module_state->__pyx_n_s_readlines);
jpayne@68 4756 Py_VISIT(traverse_module_state->__pyx_n_s_reduce);
jpayne@68 4757 Py_VISIT(traverse_module_state->__pyx_n_s_reduce_cython);
jpayne@68 4758 Py_VISIT(traverse_module_state->__pyx_n_s_reduce_ex);
jpayne@68 4759 Py_VISIT(traverse_module_state->__pyx_n_s_reference);
jpayne@68 4760 Py_VISIT(traverse_module_state->__pyx_n_s_region);
jpayne@68 4761 Py_VISIT(traverse_module_state->__pyx_n_s_replace);
jpayne@68 4762 Py_VISIT(traverse_module_state->__pyx_n_s_reset);
jpayne@68 4763 Py_VISIT(traverse_module_state->__pyx_n_s_ret);
jpayne@68 4764 Py_VISIT(traverse_module_state->__pyx_n_s_rstart);
jpayne@68 4765 Py_VISIT(traverse_module_state->__pyx_n_s_rstop);
jpayne@68 4766 Py_VISIT(traverse_module_state->__pyx_n_s_rtid);
jpayne@68 4767 Py_VISIT(traverse_module_state->__pyx_n_s_rval);
jpayne@68 4768 Py_VISIT(traverse_module_state->__pyx_n_s_seek);
jpayne@68 4769 Py_VISIT(traverse_module_state->__pyx_kp_u_seek_failed_on_HFile);
jpayne@68 4770 Py_VISIT(traverse_module_state->__pyx_kp_u_seek_not_available_in_streams);
jpayne@68 4771 Py_VISIT(traverse_module_state->__pyx_kp_u_seek_not_implemented_in_files_co);
jpayne@68 4772 Py_VISIT(traverse_module_state->__pyx_n_s_seekable);
jpayne@68 4773 Py_VISIT(traverse_module_state->__pyx_n_s_self);
jpayne@68 4774 Py_VISIT(traverse_module_state->__pyx_kp_s_self_fp_cannot_be_converted_to_a);
jpayne@68 4775 Py_VISIT(traverse_module_state->__pyx_n_s_set_name);
jpayne@68 4776 Py_VISIT(traverse_module_state->__pyx_n_s_set_verbosity);
jpayne@68 4777 Py_VISIT(traverse_module_state->__pyx_n_u_set_verbosity);
jpayne@68 4778 Py_VISIT(traverse_module_state->__pyx_n_s_setstate);
jpayne@68 4779 Py_VISIT(traverse_module_state->__pyx_n_s_setstate_cython);
jpayne@68 4780 Py_VISIT(traverse_module_state->__pyx_n_s_size);
jpayne@68 4781 Py_VISIT(traverse_module_state->__pyx_n_s_spec);
jpayne@68 4782 Py_VISIT(traverse_module_state->__pyx_n_s_split);
jpayne@68 4783 Py_VISIT(traverse_module_state->__pyx_n_s_start);
jpayne@68 4784 Py_VISIT(traverse_module_state->__pyx_kp_u_start_out_of_range_i);
jpayne@68 4785 Py_VISIT(traverse_module_state->__pyx_n_s_stop);
jpayne@68 4786 Py_VISIT(traverse_module_state->__pyx_kp_u_stop_and_end_should_not_both_be);
jpayne@68 4787 Py_VISIT(traverse_module_state->__pyx_kp_u_stop_out_of_range_i);
jpayne@68 4788 Py_VISIT(traverse_module_state->__pyx_kp_s_stringsource);
jpayne@68 4789 Py_VISIT(traverse_module_state->__pyx_n_s_super);
jpayne@68 4790 Py_VISIT(traverse_module_state->__pyx_n_s_tb);
jpayne@68 4791 Py_VISIT(traverse_module_state->__pyx_n_s_tell);
jpayne@68 4792 Py_VISIT(traverse_module_state->__pyx_kp_u_tell_failed_on_HFile);
jpayne@68 4793 Py_VISIT(traverse_module_state->__pyx_kp_u_tell_not_available_in_streams);
jpayne@68 4794 Py_VISIT(traverse_module_state->__pyx_n_s_test);
jpayne@68 4795 Py_VISIT(traverse_module_state->__pyx_n_s_tid);
jpayne@68 4796 Py_VISIT(traverse_module_state->__pyx_n_s_traceback);
jpayne@68 4797 Py_VISIT(traverse_module_state->__pyx_n_s_truncate);
jpayne@68 4798 Py_VISIT(traverse_module_state->__pyx_n_s_type);
jpayne@68 4799 Py_VISIT(traverse_module_state->__pyx_n_s_value);
jpayne@68 4800 Py_VISIT(traverse_module_state->__pyx_n_s_verbosity);
jpayne@68 4801 Py_VISIT(traverse_module_state->__pyx_n_u_w);
jpayne@68 4802 Py_VISIT(traverse_module_state->__pyx_n_s_warn);
jpayne@68 4803 Py_VISIT(traverse_module_state->__pyx_n_s_warnings);
jpayne@68 4804 Py_VISIT(traverse_module_state->__pyx_n_s_whence);
jpayne@68 4805 Py_VISIT(traverse_module_state->__pyx_n_s_writable);
jpayne@68 4806 Py_VISIT(traverse_module_state->__pyx_n_s_write);
jpayne@68 4807 Py_VISIT(traverse_module_state->__pyx_kp_u_write_failed_on_HFile);
jpayne@68 4808 Py_VISIT(traverse_module_state->__pyx_n_s_writelines);
jpayne@68 4809 Py_VISIT(traverse_module_state->__pyx_int_0);
jpayne@68 4810 Py_VISIT(traverse_module_state->__pyx_int_1);
jpayne@68 4811 Py_VISIT(traverse_module_state->__pyx_int_neg_1);
jpayne@68 4812 Py_VISIT(traverse_module_state->__pyx_codeobj_);
jpayne@68 4813 Py_VISIT(traverse_module_state->__pyx_tuple__5);
jpayne@68 4814 Py_VISIT(traverse_module_state->__pyx_tuple__6);
jpayne@68 4815 Py_VISIT(traverse_module_state->__pyx_tuple__39);
jpayne@68 4816 Py_VISIT(traverse_module_state->__pyx_tuple__43);
jpayne@68 4817 Py_VISIT(traverse_module_state->__pyx_tuple__44);
jpayne@68 4818 Py_VISIT(traverse_module_state->__pyx_tuple__46);
jpayne@68 4819 Py_VISIT(traverse_module_state->__pyx_tuple__47);
jpayne@68 4820 Py_VISIT(traverse_module_state->__pyx_tuple__48);
jpayne@68 4821 Py_VISIT(traverse_module_state->__pyx_tuple__49);
jpayne@68 4822 Py_VISIT(traverse_module_state->__pyx_tuple__51);
jpayne@68 4823 Py_VISIT(traverse_module_state->__pyx_tuple__53);
jpayne@68 4824 Py_VISIT(traverse_module_state->__pyx_tuple__54);
jpayne@68 4825 Py_VISIT(traverse_module_state->__pyx_tuple__57);
jpayne@68 4826 Py_VISIT(traverse_module_state->__pyx_tuple__66);
jpayne@68 4827 Py_VISIT(traverse_module_state->__pyx_tuple__67);
jpayne@68 4828 Py_VISIT(traverse_module_state->__pyx_tuple__68);
jpayne@68 4829 Py_VISIT(traverse_module_state->__pyx_tuple__69);
jpayne@68 4830 Py_VISIT(traverse_module_state->__pyx_tuple__70);
jpayne@68 4831 Py_VISIT(traverse_module_state->__pyx_tuple__71);
jpayne@68 4832 Py_VISIT(traverse_module_state->__pyx_tuple__72);
jpayne@68 4833 Py_VISIT(traverse_module_state->__pyx_tuple__73);
jpayne@68 4834 Py_VISIT(traverse_module_state->__pyx_tuple__74);
jpayne@68 4835 Py_VISIT(traverse_module_state->__pyx_tuple__75);
jpayne@68 4836 Py_VISIT(traverse_module_state->__pyx_tuple__76);
jpayne@68 4837 Py_VISIT(traverse_module_state->__pyx_tuple__77);
jpayne@68 4838 Py_VISIT(traverse_module_state->__pyx_tuple__78);
jpayne@68 4839 Py_VISIT(traverse_module_state->__pyx_tuple__79);
jpayne@68 4840 Py_VISIT(traverse_module_state->__pyx_tuple__80);
jpayne@68 4841 Py_VISIT(traverse_module_state->__pyx_tuple__81);
jpayne@68 4842 Py_VISIT(traverse_module_state->__pyx_tuple__82);
jpayne@68 4843 Py_VISIT(traverse_module_state->__pyx_tuple__83);
jpayne@68 4844 Py_VISIT(traverse_module_state->__pyx_tuple__84);
jpayne@68 4845 Py_VISIT(traverse_module_state->__pyx_tuple__85);
jpayne@68 4846 Py_VISIT(traverse_module_state->__pyx_tuple__86);
jpayne@68 4847 Py_VISIT(traverse_module_state->__pyx_tuple__87);
jpayne@68 4848 Py_VISIT(traverse_module_state->__pyx_tuple__88);
jpayne@68 4849 Py_VISIT(traverse_module_state->__pyx_tuple__89);
jpayne@68 4850 Py_VISIT(traverse_module_state->__pyx_tuple__90);
jpayne@68 4851 Py_VISIT(traverse_module_state->__pyx_tuple__91);
jpayne@68 4852 Py_VISIT(traverse_module_state->__pyx_tuple__92);
jpayne@68 4853 Py_VISIT(traverse_module_state->__pyx_tuple__93);
jpayne@68 4854 Py_VISIT(traverse_module_state->__pyx_tuple__94);
jpayne@68 4855 Py_VISIT(traverse_module_state->__pyx_tuple__95);
jpayne@68 4856 Py_VISIT(traverse_module_state->__pyx_tuple__96);
jpayne@68 4857 Py_VISIT(traverse_module_state->__pyx_codeobj__2);
jpayne@68 4858 Py_VISIT(traverse_module_state->__pyx_codeobj__3);
jpayne@68 4859 Py_VISIT(traverse_module_state->__pyx_codeobj__4);
jpayne@68 4860 Py_VISIT(traverse_module_state->__pyx_codeobj__7);
jpayne@68 4861 Py_VISIT(traverse_module_state->__pyx_codeobj__8);
jpayne@68 4862 Py_VISIT(traverse_module_state->__pyx_codeobj__9);
jpayne@68 4863 Py_VISIT(traverse_module_state->__pyx_codeobj__10);
jpayne@68 4864 Py_VISIT(traverse_module_state->__pyx_codeobj__11);
jpayne@68 4865 Py_VISIT(traverse_module_state->__pyx_codeobj__12);
jpayne@68 4866 Py_VISIT(traverse_module_state->__pyx_codeobj__14);
jpayne@68 4867 Py_VISIT(traverse_module_state->__pyx_codeobj__15);
jpayne@68 4868 Py_VISIT(traverse_module_state->__pyx_codeobj__16);
jpayne@68 4869 Py_VISIT(traverse_module_state->__pyx_codeobj__17);
jpayne@68 4870 Py_VISIT(traverse_module_state->__pyx_codeobj__19);
jpayne@68 4871 Py_VISIT(traverse_module_state->__pyx_codeobj__20);
jpayne@68 4872 Py_VISIT(traverse_module_state->__pyx_codeobj__21);
jpayne@68 4873 Py_VISIT(traverse_module_state->__pyx_codeobj__22);
jpayne@68 4874 Py_VISIT(traverse_module_state->__pyx_codeobj__23);
jpayne@68 4875 Py_VISIT(traverse_module_state->__pyx_codeobj__24);
jpayne@68 4876 Py_VISIT(traverse_module_state->__pyx_codeobj__25);
jpayne@68 4877 Py_VISIT(traverse_module_state->__pyx_codeobj__26);
jpayne@68 4878 Py_VISIT(traverse_module_state->__pyx_codeobj__27);
jpayne@68 4879 Py_VISIT(traverse_module_state->__pyx_codeobj__28);
jpayne@68 4880 Py_VISIT(traverse_module_state->__pyx_codeobj__29);
jpayne@68 4881 Py_VISIT(traverse_module_state->__pyx_codeobj__30);
jpayne@68 4882 Py_VISIT(traverse_module_state->__pyx_codeobj__31);
jpayne@68 4883 Py_VISIT(traverse_module_state->__pyx_codeobj__32);
jpayne@68 4884 Py_VISIT(traverse_module_state->__pyx_codeobj__33);
jpayne@68 4885 Py_VISIT(traverse_module_state->__pyx_codeobj__34);
jpayne@68 4886 Py_VISIT(traverse_module_state->__pyx_codeobj__35);
jpayne@68 4887 Py_VISIT(traverse_module_state->__pyx_codeobj__36);
jpayne@68 4888 Py_VISIT(traverse_module_state->__pyx_codeobj__37);
jpayne@68 4889 Py_VISIT(traverse_module_state->__pyx_codeobj__38);
jpayne@68 4890 Py_VISIT(traverse_module_state->__pyx_codeobj__40);
jpayne@68 4891 Py_VISIT(traverse_module_state->__pyx_codeobj__42);
jpayne@68 4892 Py_VISIT(traverse_module_state->__pyx_codeobj__45);
jpayne@68 4893 Py_VISIT(traverse_module_state->__pyx_codeobj__50);
jpayne@68 4894 Py_VISIT(traverse_module_state->__pyx_codeobj__52);
jpayne@68 4895 Py_VISIT(traverse_module_state->__pyx_codeobj__60);
jpayne@68 4896 Py_VISIT(traverse_module_state->__pyx_codeobj__61);
jpayne@68 4897 Py_VISIT(traverse_module_state->__pyx_codeobj__62);
jpayne@68 4898 Py_VISIT(traverse_module_state->__pyx_codeobj__63);
jpayne@68 4899 Py_VISIT(traverse_module_state->__pyx_codeobj__64);
jpayne@68 4900 Py_VISIT(traverse_module_state->__pyx_codeobj__65);
jpayne@68 4901 return 0;
jpayne@68 4902 }
jpayne@68 4903 #endif
jpayne@68 4904 /* #### Code section: module_state_defines ### */
jpayne@68 4905 #define __pyx_d __pyx_mstate_global->__pyx_d
jpayne@68 4906 #define __pyx_b __pyx_mstate_global->__pyx_b
jpayne@68 4907 #define __pyx_cython_runtime __pyx_mstate_global->__pyx_cython_runtime
jpayne@68 4908 #define __pyx_empty_tuple __pyx_mstate_global->__pyx_empty_tuple
jpayne@68 4909 #define __pyx_empty_bytes __pyx_mstate_global->__pyx_empty_bytes
jpayne@68 4910 #define __pyx_empty_unicode __pyx_mstate_global->__pyx_empty_unicode
jpayne@68 4911 #ifdef __Pyx_CyFunction_USED
jpayne@68 4912 #define __pyx_CyFunctionType __pyx_mstate_global->__pyx_CyFunctionType
jpayne@68 4913 #endif
jpayne@68 4914 #ifdef __Pyx_FusedFunction_USED
jpayne@68 4915 #define __pyx_FusedFunctionType __pyx_mstate_global->__pyx_FusedFunctionType
jpayne@68 4916 #endif
jpayne@68 4917 #ifdef __Pyx_Generator_USED
jpayne@68 4918 #define __pyx_GeneratorType __pyx_mstate_global->__pyx_GeneratorType
jpayne@68 4919 #endif
jpayne@68 4920 #ifdef __Pyx_IterableCoroutine_USED
jpayne@68 4921 #define __pyx_IterableCoroutineType __pyx_mstate_global->__pyx_IterableCoroutineType
jpayne@68 4922 #endif
jpayne@68 4923 #ifdef __Pyx_Coroutine_USED
jpayne@68 4924 #define __pyx_CoroutineAwaitType __pyx_mstate_global->__pyx_CoroutineAwaitType
jpayne@68 4925 #endif
jpayne@68 4926 #ifdef __Pyx_Coroutine_USED
jpayne@68 4927 #define __pyx_CoroutineType __pyx_mstate_global->__pyx_CoroutineType
jpayne@68 4928 #endif
jpayne@68 4929 #if CYTHON_USE_MODULE_STATE
jpayne@68 4930 #endif
jpayne@68 4931 #if CYTHON_USE_MODULE_STATE
jpayne@68 4932 #endif
jpayne@68 4933 #if CYTHON_USE_MODULE_STATE
jpayne@68 4934 #endif
jpayne@68 4935 #if CYTHON_USE_MODULE_STATE
jpayne@68 4936 #endif
jpayne@68 4937 #if CYTHON_USE_MODULE_STATE
jpayne@68 4938 #endif
jpayne@68 4939 #if CYTHON_USE_MODULE_STATE
jpayne@68 4940 #endif
jpayne@68 4941 #if CYTHON_USE_MODULE_STATE
jpayne@68 4942 #endif
jpayne@68 4943 #if CYTHON_USE_MODULE_STATE
jpayne@68 4944 #endif
jpayne@68 4945 #if CYTHON_USE_MODULE_STATE
jpayne@68 4946 #endif
jpayne@68 4947 #if CYTHON_USE_MODULE_STATE
jpayne@68 4948 #endif
jpayne@68 4949 #define __pyx_ptype_7cpython_4type_type __pyx_mstate_global->__pyx_ptype_7cpython_4type_type
jpayne@68 4950 #if CYTHON_USE_MODULE_STATE
jpayne@68 4951 #endif
jpayne@68 4952 #if CYTHON_USE_MODULE_STATE
jpayne@68 4953 #endif
jpayne@68 4954 #if CYTHON_USE_MODULE_STATE
jpayne@68 4955 #endif
jpayne@68 4956 #if CYTHON_USE_MODULE_STATE
jpayne@68 4957 #endif
jpayne@68 4958 #if CYTHON_USE_MODULE_STATE
jpayne@68 4959 #endif
jpayne@68 4960 #if CYTHON_USE_MODULE_STATE
jpayne@68 4961 #endif
jpayne@68 4962 #if CYTHON_USE_MODULE_STATE
jpayne@68 4963 #endif
jpayne@68 4964 #if CYTHON_USE_MODULE_STATE
jpayne@68 4965 #endif
jpayne@68 4966 #if CYTHON_USE_MODULE_STATE
jpayne@68 4967 #endif
jpayne@68 4968 #if CYTHON_USE_MODULE_STATE
jpayne@68 4969 #endif
jpayne@68 4970 #if CYTHON_USE_MODULE_STATE
jpayne@68 4971 #endif
jpayne@68 4972 #if CYTHON_USE_MODULE_STATE
jpayne@68 4973 #endif
jpayne@68 4974 #if CYTHON_USE_MODULE_STATE
jpayne@68 4975 #endif
jpayne@68 4976 #if CYTHON_USE_MODULE_STATE
jpayne@68 4977 #endif
jpayne@68 4978 #define __pyx_ptype_7cpython_4bool_bool __pyx_mstate_global->__pyx_ptype_7cpython_4bool_bool
jpayne@68 4979 #if CYTHON_USE_MODULE_STATE
jpayne@68 4980 #endif
jpayne@68 4981 #if CYTHON_USE_MODULE_STATE
jpayne@68 4982 #endif
jpayne@68 4983 #if CYTHON_USE_MODULE_STATE
jpayne@68 4984 #endif
jpayne@68 4985 #if CYTHON_USE_MODULE_STATE
jpayne@68 4986 #endif
jpayne@68 4987 #define __pyx_ptype_7cpython_7complex_complex __pyx_mstate_global->__pyx_ptype_7cpython_7complex_complex
jpayne@68 4988 #if CYTHON_USE_MODULE_STATE
jpayne@68 4989 #endif
jpayne@68 4990 #if CYTHON_USE_MODULE_STATE
jpayne@68 4991 #endif
jpayne@68 4992 #if CYTHON_USE_MODULE_STATE
jpayne@68 4993 #endif
jpayne@68 4994 #if CYTHON_USE_MODULE_STATE
jpayne@68 4995 #endif
jpayne@68 4996 #if CYTHON_USE_MODULE_STATE
jpayne@68 4997 #endif
jpayne@68 4998 #if CYTHON_USE_MODULE_STATE
jpayne@68 4999 #endif
jpayne@68 5000 #if CYTHON_USE_MODULE_STATE
jpayne@68 5001 #endif
jpayne@68 5002 #if CYTHON_USE_MODULE_STATE
jpayne@68 5003 #endif
jpayne@68 5004 #if CYTHON_USE_MODULE_STATE
jpayne@68 5005 #endif
jpayne@68 5006 #if CYTHON_USE_MODULE_STATE
jpayne@68 5007 #endif
jpayne@68 5008 #if CYTHON_USE_MODULE_STATE
jpayne@68 5009 #endif
jpayne@68 5010 #if CYTHON_USE_MODULE_STATE
jpayne@68 5011 #endif
jpayne@68 5012 #if CYTHON_USE_MODULE_STATE
jpayne@68 5013 #endif
jpayne@68 5014 #if CYTHON_USE_MODULE_STATE
jpayne@68 5015 #endif
jpayne@68 5016 #if CYTHON_USE_MODULE_STATE
jpayne@68 5017 #endif
jpayne@68 5018 #if CYTHON_USE_MODULE_STATE
jpayne@68 5019 #endif
jpayne@68 5020 #if CYTHON_USE_MODULE_STATE
jpayne@68 5021 #endif
jpayne@68 5022 #if CYTHON_USE_MODULE_STATE
jpayne@68 5023 #endif
jpayne@68 5024 #if CYTHON_USE_MODULE_STATE
jpayne@68 5025 #endif
jpayne@68 5026 #if CYTHON_USE_MODULE_STATE
jpayne@68 5027 #endif
jpayne@68 5028 #if CYTHON_USE_MODULE_STATE
jpayne@68 5029 #endif
jpayne@68 5030 #if CYTHON_USE_MODULE_STATE
jpayne@68 5031 #endif
jpayne@68 5032 #if CYTHON_USE_MODULE_STATE
jpayne@68 5033 #endif
jpayne@68 5034 #define __pyx_ptype_7cpython_5array_array __pyx_mstate_global->__pyx_ptype_7cpython_5array_array
jpayne@68 5035 #if CYTHON_USE_MODULE_STATE
jpayne@68 5036 #endif
jpayne@68 5037 #if CYTHON_USE_MODULE_STATE
jpayne@68 5038 #define __pyx_type_5pysam_10libchtslib_HTSFile __pyx_mstate_global->__pyx_type_5pysam_10libchtslib_HTSFile
jpayne@68 5039 #define __pyx_type_5pysam_10libchtslib_HFile __pyx_mstate_global->__pyx_type_5pysam_10libchtslib_HFile
jpayne@68 5040 #endif
jpayne@68 5041 #define __pyx_ptype_5pysam_10libchtslib_HTSFile __pyx_mstate_global->__pyx_ptype_5pysam_10libchtslib_HTSFile
jpayne@68 5042 #define __pyx_ptype_5pysam_10libchtslib_HFile __pyx_mstate_global->__pyx_ptype_5pysam_10libchtslib_HFile
jpayne@68 5043 #define __pyx_n_u_ALIGNMENTS __pyx_mstate_global->__pyx_n_u_ALIGNMENTS
jpayne@68 5044 #define __pyx_kp_u_An_error_occurred_while_applying __pyx_mstate_global->__pyx_kp_u_An_error_occurred_while_applying
jpayne@68 5045 #define __pyx_n_s_AttributeError __pyx_mstate_global->__pyx_n_s_AttributeError
jpayne@68 5046 #define __pyx_n_u_BAI __pyx_mstate_global->__pyx_n_u_BAI
jpayne@68 5047 #define __pyx_n_u_BAM __pyx_mstate_global->__pyx_n_u_BAM
jpayne@68 5048 #define __pyx_n_u_BCF __pyx_mstate_global->__pyx_n_u_BCF
jpayne@68 5049 #define __pyx_n_u_BED __pyx_mstate_global->__pyx_n_u_BED
jpayne@68 5050 #define __pyx_n_u_BGZF __pyx_mstate_global->__pyx_n_u_BGZF
jpayne@68 5051 #define __pyx_n_u_BINARY_FORMAT __pyx_mstate_global->__pyx_n_u_BINARY_FORMAT
jpayne@68 5052 #define __pyx_n_s_CFalse __pyx_mstate_global->__pyx_n_s_CFalse
jpayne@68 5053 #define __pyx_n_u_CRAI __pyx_mstate_global->__pyx_n_u_CRAI
jpayne@68 5054 #define __pyx_n_u_CRAM __pyx_mstate_global->__pyx_n_u_CRAM
jpayne@68 5055 #define __pyx_n_u_CSI __pyx_mstate_global->__pyx_n_u_CSI
jpayne@68 5056 #define __pyx_n_s_CTrue __pyx_mstate_global->__pyx_n_s_CTrue
jpayne@68 5057 #define __pyx_n_u_CUSTOM __pyx_mstate_global->__pyx_n_u_CUSTOM
jpayne@68 5058 #define __pyx_n_s_CallableValue __pyx_mstate_global->__pyx_n_s_CallableValue
jpayne@68 5059 #define __pyx_n_s_CallableValue___bool __pyx_mstate_global->__pyx_n_s_CallableValue___bool
jpayne@68 5060 #define __pyx_n_s_CallableValue___call __pyx_mstate_global->__pyx_n_s_CallableValue___call
jpayne@68 5061 #define __pyx_n_s_CallableValue___eq __pyx_mstate_global->__pyx_n_s_CallableValue___eq
jpayne@68 5062 #define __pyx_n_s_CallableValue___init __pyx_mstate_global->__pyx_n_s_CallableValue___init
jpayne@68 5063 #define __pyx_n_s_CallableValue___ne __pyx_mstate_global->__pyx_n_s_CallableValue___ne
jpayne@68 5064 #define __pyx_n_s_CallableValue___nonzero __pyx_mstate_global->__pyx_n_s_CallableValue___nonzero
jpayne@68 5065 #define __pyx_kp_u_Cannot_create_hfile __pyx_mstate_global->__pyx_kp_u_Cannot_create_hfile
jpayne@68 5066 #define __pyx_kp_u_Flushing __pyx_mstate_global->__pyx_kp_u_Flushing
jpayne@68 5067 #define __pyx_n_u_GZI __pyx_mstate_global->__pyx_n_u_GZI
jpayne@68 5068 #define __pyx_n_u_GZIP __pyx_mstate_global->__pyx_n_u_GZIP
jpayne@68 5069 #define __pyx_n_s_HFile __pyx_mstate_global->__pyx_n_s_HFile
jpayne@68 5070 #define __pyx_n_u_HFile __pyx_mstate_global->__pyx_n_u_HFile
jpayne@68 5071 #define __pyx_n_s_HFile___enter __pyx_mstate_global->__pyx_n_s_HFile___enter
jpayne@68 5072 #define __pyx_n_s_HFile___exit __pyx_mstate_global->__pyx_n_s_HFile___exit
jpayne@68 5073 #define __pyx_n_s_HFile___reduce_cython __pyx_mstate_global->__pyx_n_s_HFile___reduce_cython
jpayne@68 5074 #define __pyx_n_s_HFile___setstate_cython __pyx_mstate_global->__pyx_n_s_HFile___setstate_cython
jpayne@68 5075 #define __pyx_n_s_HFile_close __pyx_mstate_global->__pyx_n_s_HFile_close
jpayne@68 5076 #define __pyx_n_s_HFile_fileno __pyx_mstate_global->__pyx_n_s_HFile_fileno
jpayne@68 5077 #define __pyx_n_s_HFile_flush __pyx_mstate_global->__pyx_n_s_HFile_flush
jpayne@68 5078 #define __pyx_n_s_HFile_isatty __pyx_mstate_global->__pyx_n_s_HFile_isatty
jpayne@68 5079 #define __pyx_n_s_HFile_read __pyx_mstate_global->__pyx_n_s_HFile_read
jpayne@68 5080 #define __pyx_n_s_HFile_readable __pyx_mstate_global->__pyx_n_s_HFile_readable
jpayne@68 5081 #define __pyx_n_s_HFile_readall __pyx_mstate_global->__pyx_n_s_HFile_readall
jpayne@68 5082 #define __pyx_n_s_HFile_readinto __pyx_mstate_global->__pyx_n_s_HFile_readinto
jpayne@68 5083 #define __pyx_n_s_HFile_readline __pyx_mstate_global->__pyx_n_s_HFile_readline
jpayne@68 5084 #define __pyx_n_s_HFile_readlines __pyx_mstate_global->__pyx_n_s_HFile_readlines
jpayne@68 5085 #define __pyx_n_s_HFile_seek __pyx_mstate_global->__pyx_n_s_HFile_seek
jpayne@68 5086 #define __pyx_n_s_HFile_seekable __pyx_mstate_global->__pyx_n_s_HFile_seekable
jpayne@68 5087 #define __pyx_n_s_HFile_tell __pyx_mstate_global->__pyx_n_s_HFile_tell
jpayne@68 5088 #define __pyx_n_s_HFile_truncate __pyx_mstate_global->__pyx_n_s_HFile_truncate
jpayne@68 5089 #define __pyx_n_s_HFile_writable __pyx_mstate_global->__pyx_n_s_HFile_writable
jpayne@68 5090 #define __pyx_n_s_HFile_write __pyx_mstate_global->__pyx_n_s_HFile_write
jpayne@68 5091 #define __pyx_n_s_HFile_writelines __pyx_mstate_global->__pyx_n_s_HFile_writelines
jpayne@68 5092 #define __pyx_n_s_HTSFile __pyx_mstate_global->__pyx_n_s_HTSFile
jpayne@68 5093 #define __pyx_n_u_HTSFile __pyx_mstate_global->__pyx_n_u_HTSFile
jpayne@68 5094 #define __pyx_n_s_HTSFile___enter __pyx_mstate_global->__pyx_n_s_HTSFile___enter
jpayne@68 5095 #define __pyx_n_s_HTSFile___exit __pyx_mstate_global->__pyx_n_s_HTSFile___exit
jpayne@68 5096 #define __pyx_n_s_HTSFile___reduce_cython __pyx_mstate_global->__pyx_n_s_HTSFile___reduce_cython
jpayne@68 5097 #define __pyx_n_s_HTSFile___setstate_cython __pyx_mstate_global->__pyx_n_s_HTSFile___setstate_cython
jpayne@68 5098 #define __pyx_n_s_HTSFile_add_hts_options __pyx_mstate_global->__pyx_n_s_HTSFile_add_hts_options
jpayne@68 5099 #define __pyx_n_s_HTSFile_check_truncation __pyx_mstate_global->__pyx_n_s_HTSFile_check_truncation
jpayne@68 5100 #define __pyx_n_s_HTSFile_close __pyx_mstate_global->__pyx_n_s_HTSFile_close
jpayne@68 5101 #define __pyx_n_s_HTSFile_flush __pyx_mstate_global->__pyx_n_s_HTSFile_flush
jpayne@68 5102 #define __pyx_n_s_HTSFile_get_reference_name __pyx_mstate_global->__pyx_n_s_HTSFile_get_reference_name
jpayne@68 5103 #define __pyx_n_s_HTSFile_get_tid __pyx_mstate_global->__pyx_n_s_HTSFile_get_tid
jpayne@68 5104 #define __pyx_n_s_HTSFile_is_valid_reference_name __pyx_mstate_global->__pyx_n_s_HTSFile_is_valid_reference_name
jpayne@68 5105 #define __pyx_n_s_HTSFile_is_valid_tid __pyx_mstate_global->__pyx_n_s_HTSFile_is_valid_tid
jpayne@68 5106 #define __pyx_n_s_HTSFile_parse_region __pyx_mstate_global->__pyx_n_s_HTSFile_parse_region
jpayne@68 5107 #define __pyx_n_s_HTSFile_reset __pyx_mstate_global->__pyx_n_s_HTSFile_reset
jpayne@68 5108 #define __pyx_n_s_HTSFile_seek __pyx_mstate_global->__pyx_n_s_HTSFile_seek
jpayne@68 5109 #define __pyx_n_s_HTSFile_tell __pyx_mstate_global->__pyx_n_s_HTSFile_tell
jpayne@68 5110 #define __pyx_n_u_INDEX __pyx_mstate_global->__pyx_n_u_INDEX
jpayne@68 5111 #define __pyx_n_s_IOError __pyx_mstate_global->__pyx_n_s_IOError
jpayne@68 5112 #define __pyx_kp_u_I_O_operation_on_closed_file __pyx_mstate_global->__pyx_kp_u_I_O_operation_on_closed_file
jpayne@68 5113 #define __pyx_n_s_IndexError __pyx_mstate_global->__pyx_n_s_IndexError
jpayne@68 5114 #define __pyx_kp_u_Invalid_format_option_specified __pyx_mstate_global->__pyx_kp_u_Invalid_format_option_specified
jpayne@68 5115 #define __pyx_n_s_MemoryError __pyx_mstate_global->__pyx_n_s_MemoryError
jpayne@68 5116 #define __pyx_n_u_NONE __pyx_mstate_global->__pyx_n_u_NONE
jpayne@68 5117 #define __pyx_n_s_NotImplementedError __pyx_mstate_global->__pyx_n_s_NotImplementedError
jpayne@68 5118 #define __pyx_n_s_OSError __pyx_mstate_global->__pyx_n_s_OSError
jpayne@68 5119 #define __pyx_n_s_OverflowError __pyx_mstate_global->__pyx_n_s_OverflowError
jpayne@68 5120 #define __pyx_n_u_REGIONS __pyx_mstate_global->__pyx_n_u_REGIONS
jpayne@68 5121 #define __pyx_n_s_RuntimeError __pyx_mstate_global->__pyx_n_s_RuntimeError
jpayne@68 5122 #define __pyx_n_u_SAM __pyx_mstate_global->__pyx_n_u_SAM
jpayne@68 5123 #define __pyx_n_s_SEEK_SET __pyx_mstate_global->__pyx_n_s_SEEK_SET
jpayne@68 5124 #define __pyx_n_s_StopIteration __pyx_mstate_global->__pyx_n_s_StopIteration
jpayne@68 5125 #define __pyx_n_u_TBI __pyx_mstate_global->__pyx_n_u_TBI
jpayne@68 5126 #define __pyx_n_u_TEXT_FORMAT __pyx_mstate_global->__pyx_n_u_TEXT_FORMAT
jpayne@68 5127 #define __pyx_n_s_TypeError __pyx_mstate_global->__pyx_n_s_TypeError
jpayne@68 5128 #define __pyx_n_u_UNKNOWN __pyx_mstate_global->__pyx_n_u_UNKNOWN
jpayne@68 5129 #define __pyx_n_u_VARIANTS __pyx_mstate_global->__pyx_n_u_VARIANTS
jpayne@68 5130 #define __pyx_n_u_VCF __pyx_mstate_global->__pyx_n_u_VCF
jpayne@68 5131 #define __pyx_n_s_ValueError __pyx_mstate_global->__pyx_n_s_ValueError
jpayne@68 5132 #define __pyx_kp_b__13 __pyx_mstate_global->__pyx_kp_b__13
jpayne@68 5133 #define __pyx_kp_u__55 __pyx_mstate_global->__pyx_kp_u__55
jpayne@68 5134 #define __pyx_kp_u__56 __pyx_mstate_global->__pyx_kp_u__56
jpayne@68 5135 #define __pyx_n_s__58 __pyx_mstate_global->__pyx_n_s__58
jpayne@68 5136 #define __pyx_kp_u__58 __pyx_mstate_global->__pyx_kp_u__58
jpayne@68 5137 #define __pyx_kp_u__59 __pyx_mstate_global->__pyx_kp_u__59
jpayne@68 5138 #define __pyx_n_s__97 __pyx_mstate_global->__pyx_n_s__97
jpayne@68 5139 #define __pyx_n_s_add_hts_options __pyx_mstate_global->__pyx_n_s_add_hts_options
jpayne@68 5140 #define __pyx_n_s_all __pyx_mstate_global->__pyx_n_s_all
jpayne@68 5141 #define __pyx_n_s_asyncio_coroutines __pyx_mstate_global->__pyx_n_s_asyncio_coroutines
jpayne@68 5142 #define __pyx_n_b_b __pyx_mstate_global->__pyx_n_b_b
jpayne@68 5143 #define __pyx_n_s_b __pyx_mstate_global->__pyx_n_s_b
jpayne@68 5144 #define __pyx_n_s_bgzfp __pyx_mstate_global->__pyx_n_s_bgzfp
jpayne@68 5145 #define __pyx_n_s_bool __pyx_mstate_global->__pyx_n_s_bool
jpayne@68 5146 #define __pyx_n_s_buf __pyx_mstate_global->__pyx_n_s_buf
jpayne@68 5147 #define __pyx_n_s_bytes_read __pyx_mstate_global->__pyx_n_s_bytes_read
jpayne@68 5148 #define __pyx_n_b_c __pyx_mstate_global->__pyx_n_b_c
jpayne@68 5149 #define __pyx_n_s_call __pyx_mstate_global->__pyx_n_s_call
jpayne@68 5150 #define __pyx_n_s_check_truncation __pyx_mstate_global->__pyx_n_s_check_truncation
jpayne@68 5151 #define __pyx_n_s_chunk_size __pyx_mstate_global->__pyx_n_s_chunk_size
jpayne@68 5152 #define __pyx_n_s_class_getitem __pyx_mstate_global->__pyx_n_s_class_getitem
jpayne@68 5153 #define __pyx_n_s_cline_in_traceback __pyx_mstate_global->__pyx_n_s_cline_in_traceback
jpayne@68 5154 #define __pyx_n_s_close __pyx_mstate_global->__pyx_n_s_close
jpayne@68 5155 #define __pyx_n_s_closefd __pyx_mstate_global->__pyx_n_s_closefd
jpayne@68 5156 #define __pyx_n_s_contig __pyx_mstate_global->__pyx_n_s_contig
jpayne@68 5157 #define __pyx_kp_u_contig_and_reference_should_not __pyx_mstate_global->__pyx_kp_u_contig_and_reference_should_not
jpayne@68 5158 #define __pyx_n_s_coord __pyx_mstate_global->__pyx_n_s_coord
jpayne@68 5159 #define __pyx_n_s_cpart __pyx_mstate_global->__pyx_n_s_cpart
jpayne@68 5160 #define __pyx_n_s_dict __pyx_mstate_global->__pyx_n_s_dict
jpayne@68 5161 #define __pyx_kp_u_disable __pyx_mstate_global->__pyx_kp_u_disable
jpayne@68 5162 #define __pyx_n_s_doc __pyx_mstate_global->__pyx_n_s_doc
jpayne@68 5163 #define __pyx_kp_u_enable __pyx_mstate_global->__pyx_kp_u_enable
jpayne@68 5164 #define __pyx_n_s_end __pyx_mstate_global->__pyx_n_s_end
jpayne@68 5165 #define __pyx_n_s_enter __pyx_mstate_global->__pyx_n_s_enter
jpayne@68 5166 #define __pyx_n_s_eq __pyx_mstate_global->__pyx_n_s_eq
jpayne@68 5167 #define __pyx_kp_u_error_checking_for_EOF_marker __pyx_mstate_global->__pyx_kp_u_error_checking_for_EOF_marker
jpayne@68 5168 #define __pyx_n_s_exc_type __pyx_mstate_global->__pyx_n_s_exc_type
jpayne@68 5169 #define __pyx_n_s_exc_value __pyx_mstate_global->__pyx_n_s_exc_value
jpayne@68 5170 #define __pyx_n_s_exit __pyx_mstate_global->__pyx_n_s_exit
jpayne@68 5171 #define __pyx_kp_u_failed __pyx_mstate_global->__pyx_kp_u_failed
jpayne@68 5172 #define __pyx_kp_u_failed_to_close_HFile __pyx_mstate_global->__pyx_kp_u_failed_to_close_HFile
jpayne@68 5173 #define __pyx_kp_u_failed_to_flush_HFile __pyx_mstate_global->__pyx_kp_u_failed_to_flush_HFile
jpayne@68 5174 #define __pyx_kp_u_failed_to_open_HFile __pyx_mstate_global->__pyx_kp_u_failed_to_open_HFile
jpayne@68 5175 #define __pyx_kp_u_failed_to_read_HFile __pyx_mstate_global->__pyx_kp_u_failed_to_read_HFile
jpayne@68 5176 #define __pyx_kp_u_fd __pyx_mstate_global->__pyx_kp_u_fd
jpayne@68 5177 #define __pyx_n_s_fileno __pyx_mstate_global->__pyx_n_s_fileno
jpayne@68 5178 #define __pyx_kp_u_fileno_not_available __pyx_mstate_global->__pyx_kp_u_fileno_not_available
jpayne@68 5179 #define __pyx_n_s_flush __pyx_mstate_global->__pyx_n_s_flush
jpayne@68 5180 #define __pyx_n_s_format __pyx_mstate_global->__pyx_n_s_format
jpayne@68 5181 #define __pyx_n_s_format_option __pyx_mstate_global->__pyx_n_s_format_option
jpayne@68 5182 #define __pyx_n_s_format_options __pyx_mstate_global->__pyx_n_s_format_options
jpayne@68 5183 #define __pyx_n_s_fp __pyx_mstate_global->__pyx_n_s_fp
jpayne@68 5184 #define __pyx_kp_u_gc __pyx_mstate_global->__pyx_kp_u_gc
jpayne@68 5185 #define __pyx_n_s_get_reference_name __pyx_mstate_global->__pyx_n_s_get_reference_name
jpayne@68 5186 #define __pyx_n_s_get_tid __pyx_mstate_global->__pyx_n_s_get_tid
jpayne@68 5187 #define __pyx_n_s_get_verbosity __pyx_mstate_global->__pyx_n_s_get_verbosity
jpayne@68 5188 #define __pyx_n_u_get_verbosity __pyx_mstate_global->__pyx_n_u_get_verbosity
jpayne@68 5189 #define __pyx_n_s_getstate __pyx_mstate_global->__pyx_n_s_getstate
jpayne@68 5190 #define __pyx_n_s_got __pyx_mstate_global->__pyx_n_s_got
jpayne@68 5191 #define __pyx_n_s_ignore_truncation __pyx_mstate_global->__pyx_n_s_ignore_truncation
jpayne@68 5192 #define __pyx_n_s_import __pyx_mstate_global->__pyx_n_s_import
jpayne@68 5193 #define __pyx_n_s_init __pyx_mstate_global->__pyx_n_s_init
jpayne@68 5194 #define __pyx_n_s_init_subclass __pyx_mstate_global->__pyx_n_s_init_subclass
jpayne@68 5195 #define __pyx_n_s_initializing __pyx_mstate_global->__pyx_n_s_initializing
jpayne@68 5196 #define __pyx_kp_u_invalid_contig_s __pyx_mstate_global->__pyx_kp_u_invalid_contig_s
jpayne@68 5197 #define __pyx_kp_u_invalid_coordinates_start_i_stop __pyx_mstate_global->__pyx_kp_u_invalid_coordinates_start_i_stop
jpayne@68 5198 #define __pyx_kp_u_invalid_tid __pyx_mstate_global->__pyx_kp_u_invalid_tid
jpayne@68 5199 #define __pyx_n_s_io __pyx_mstate_global->__pyx_n_s_io
jpayne@68 5200 #define __pyx_n_s_is_coroutine __pyx_mstate_global->__pyx_n_s_is_coroutine
jpayne@68 5201 #define __pyx_n_s_is_open __pyx_mstate_global->__pyx_n_s_is_open
jpayne@68 5202 #define __pyx_n_s_is_valid_reference_name __pyx_mstate_global->__pyx_n_s_is_valid_reference_name
jpayne@68 5203 #define __pyx_n_s_is_valid_tid __pyx_mstate_global->__pyx_n_s_is_valid_tid
jpayne@68 5204 #define __pyx_n_s_isatty __pyx_mstate_global->__pyx_n_s_isatty
jpayne@68 5205 #define __pyx_kp_u_isenabled __pyx_mstate_global->__pyx_kp_u_isenabled
jpayne@68 5206 #define __pyx_n_s_join __pyx_mstate_global->__pyx_n_s_join
jpayne@68 5207 #define __pyx_n_s_line __pyx_mstate_global->__pyx_n_s_line
jpayne@68 5208 #define __pyx_n_s_lines __pyx_mstate_global->__pyx_n_s_lines
jpayne@68 5209 #define __pyx_n_s_main __pyx_mstate_global->__pyx_n_s_main
jpayne@68 5210 #define __pyx_n_s_metaclass __pyx_mstate_global->__pyx_n_s_metaclass
jpayne@68 5211 #define __pyx_kp_u_metadata_not_available_on_closed __pyx_mstate_global->__pyx_kp_u_metadata_not_available_on_closed
jpayne@68 5212 #define __pyx_n_s_mode __pyx_mstate_global->__pyx_n_s_mode
jpayne@68 5213 #define __pyx_n_s_module __pyx_mstate_global->__pyx_n_s_module
jpayne@68 5214 #define __pyx_n_s_mro_entries __pyx_mstate_global->__pyx_n_s_mro_entries
jpayne@68 5215 #define __pyx_n_s_msg __pyx_mstate_global->__pyx_n_s_msg
jpayne@68 5216 #define __pyx_n_s_mv __pyx_mstate_global->__pyx_n_s_mv
jpayne@68 5217 #define __pyx_n_s_name __pyx_mstate_global->__pyx_n_s_name
jpayne@68 5218 #define __pyx_n_s_name_2 __pyx_mstate_global->__pyx_n_s_name_2
jpayne@68 5219 #define __pyx_n_s_ne __pyx_mstate_global->__pyx_n_s_ne
jpayne@68 5220 #define __pyx_kp_u_no_BGZF_EOF_marker_file_may_be_t __pyx_mstate_global->__pyx_kp_u_no_BGZF_EOF_marker_file_may_be_t
jpayne@68 5221 #define __pyx_kp_s_no_default___reduce___due_to_non __pyx_mstate_global->__pyx_kp_s_no_default___reduce___due_to_non
jpayne@68 5222 #define __pyx_n_s_nonzero __pyx_mstate_global->__pyx_n_s_nonzero
jpayne@68 5223 #define __pyx_n_s_object __pyx_mstate_global->__pyx_n_s_object
jpayne@68 5224 #define __pyx_n_s_off __pyx_mstate_global->__pyx_n_s_off
jpayne@68 5225 #define __pyx_n_s_offset __pyx_mstate_global->__pyx_n_s_offset
jpayne@68 5226 #define __pyx_kp_u_operation_on_closed_HFile __pyx_mstate_global->__pyx_kp_u_operation_on_closed_HFile
jpayne@68 5227 #define __pyx_n_s_opts __pyx_mstate_global->__pyx_n_s_opts
jpayne@68 5228 #define __pyx_n_s_os __pyx_mstate_global->__pyx_n_s_os
jpayne@68 5229 #define __pyx_n_s_other __pyx_mstate_global->__pyx_n_s_other
jpayne@68 5230 #define __pyx_n_s_parse_region __pyx_mstate_global->__pyx_n_s_parse_region
jpayne@68 5231 #define __pyx_n_s_part __pyx_mstate_global->__pyx_n_s_part
jpayne@68 5232 #define __pyx_n_s_parts __pyx_mstate_global->__pyx_n_s_parts
jpayne@68 5233 #define __pyx_n_s_prepare __pyx_mstate_global->__pyx_n_s_prepare
jpayne@68 5234 #define __pyx_n_s_pysam_libchtslib __pyx_mstate_global->__pyx_n_s_pysam_libchtslib
jpayne@68 5235 #define __pyx_kp_s_pysam_libchtslib_pyx __pyx_mstate_global->__pyx_kp_s_pysam_libchtslib_pyx
jpayne@68 5236 #define __pyx_n_s_pyx_state __pyx_mstate_global->__pyx_n_s_pyx_state
jpayne@68 5237 #define __pyx_n_s_pyx_vtable __pyx_mstate_global->__pyx_n_s_pyx_vtable
jpayne@68 5238 #define __pyx_n_s_qualname __pyx_mstate_global->__pyx_n_s_qualname
jpayne@68 5239 #define __pyx_n_u_r __pyx_mstate_global->__pyx_n_u_r
jpayne@68 5240 #define __pyx_n_s_re __pyx_mstate_global->__pyx_n_s_re
jpayne@68 5241 #define __pyx_n_s_read __pyx_mstate_global->__pyx_n_s_read
jpayne@68 5242 #define __pyx_n_s_readable __pyx_mstate_global->__pyx_n_s_readable
jpayne@68 5243 #define __pyx_n_s_readall __pyx_mstate_global->__pyx_n_s_readall
jpayne@68 5244 #define __pyx_n_s_readinto __pyx_mstate_global->__pyx_n_s_readinto
jpayne@68 5245 #define __pyx_n_s_readline __pyx_mstate_global->__pyx_n_s_readline
jpayne@68 5246 #define __pyx_n_s_readlines __pyx_mstate_global->__pyx_n_s_readlines
jpayne@68 5247 #define __pyx_n_s_reduce __pyx_mstate_global->__pyx_n_s_reduce
jpayne@68 5248 #define __pyx_n_s_reduce_cython __pyx_mstate_global->__pyx_n_s_reduce_cython
jpayne@68 5249 #define __pyx_n_s_reduce_ex __pyx_mstate_global->__pyx_n_s_reduce_ex
jpayne@68 5250 #define __pyx_n_s_reference __pyx_mstate_global->__pyx_n_s_reference
jpayne@68 5251 #define __pyx_n_s_region __pyx_mstate_global->__pyx_n_s_region
jpayne@68 5252 #define __pyx_n_s_replace __pyx_mstate_global->__pyx_n_s_replace
jpayne@68 5253 #define __pyx_n_s_reset __pyx_mstate_global->__pyx_n_s_reset
jpayne@68 5254 #define __pyx_n_s_ret __pyx_mstate_global->__pyx_n_s_ret
jpayne@68 5255 #define __pyx_n_s_rstart __pyx_mstate_global->__pyx_n_s_rstart
jpayne@68 5256 #define __pyx_n_s_rstop __pyx_mstate_global->__pyx_n_s_rstop
jpayne@68 5257 #define __pyx_n_s_rtid __pyx_mstate_global->__pyx_n_s_rtid
jpayne@68 5258 #define __pyx_n_s_rval __pyx_mstate_global->__pyx_n_s_rval
jpayne@68 5259 #define __pyx_n_s_seek __pyx_mstate_global->__pyx_n_s_seek
jpayne@68 5260 #define __pyx_kp_u_seek_failed_on_HFile __pyx_mstate_global->__pyx_kp_u_seek_failed_on_HFile
jpayne@68 5261 #define __pyx_kp_u_seek_not_available_in_streams __pyx_mstate_global->__pyx_kp_u_seek_not_available_in_streams
jpayne@68 5262 #define __pyx_kp_u_seek_not_implemented_in_files_co __pyx_mstate_global->__pyx_kp_u_seek_not_implemented_in_files_co
jpayne@68 5263 #define __pyx_n_s_seekable __pyx_mstate_global->__pyx_n_s_seekable
jpayne@68 5264 #define __pyx_n_s_self __pyx_mstate_global->__pyx_n_s_self
jpayne@68 5265 #define __pyx_kp_s_self_fp_cannot_be_converted_to_a __pyx_mstate_global->__pyx_kp_s_self_fp_cannot_be_converted_to_a
jpayne@68 5266 #define __pyx_n_s_set_name __pyx_mstate_global->__pyx_n_s_set_name
jpayne@68 5267 #define __pyx_n_s_set_verbosity __pyx_mstate_global->__pyx_n_s_set_verbosity
jpayne@68 5268 #define __pyx_n_u_set_verbosity __pyx_mstate_global->__pyx_n_u_set_verbosity
jpayne@68 5269 #define __pyx_n_s_setstate __pyx_mstate_global->__pyx_n_s_setstate
jpayne@68 5270 #define __pyx_n_s_setstate_cython __pyx_mstate_global->__pyx_n_s_setstate_cython
jpayne@68 5271 #define __pyx_n_s_size __pyx_mstate_global->__pyx_n_s_size
jpayne@68 5272 #define __pyx_n_s_spec __pyx_mstate_global->__pyx_n_s_spec
jpayne@68 5273 #define __pyx_n_s_split __pyx_mstate_global->__pyx_n_s_split
jpayne@68 5274 #define __pyx_n_s_start __pyx_mstate_global->__pyx_n_s_start
jpayne@68 5275 #define __pyx_kp_u_start_out_of_range_i __pyx_mstate_global->__pyx_kp_u_start_out_of_range_i
jpayne@68 5276 #define __pyx_n_s_stop __pyx_mstate_global->__pyx_n_s_stop
jpayne@68 5277 #define __pyx_kp_u_stop_and_end_should_not_both_be __pyx_mstate_global->__pyx_kp_u_stop_and_end_should_not_both_be
jpayne@68 5278 #define __pyx_kp_u_stop_out_of_range_i __pyx_mstate_global->__pyx_kp_u_stop_out_of_range_i
jpayne@68 5279 #define __pyx_kp_s_stringsource __pyx_mstate_global->__pyx_kp_s_stringsource
jpayne@68 5280 #define __pyx_n_s_super __pyx_mstate_global->__pyx_n_s_super
jpayne@68 5281 #define __pyx_n_s_tb __pyx_mstate_global->__pyx_n_s_tb
jpayne@68 5282 #define __pyx_n_s_tell __pyx_mstate_global->__pyx_n_s_tell
jpayne@68 5283 #define __pyx_kp_u_tell_failed_on_HFile __pyx_mstate_global->__pyx_kp_u_tell_failed_on_HFile
jpayne@68 5284 #define __pyx_kp_u_tell_not_available_in_streams __pyx_mstate_global->__pyx_kp_u_tell_not_available_in_streams
jpayne@68 5285 #define __pyx_n_s_test __pyx_mstate_global->__pyx_n_s_test
jpayne@68 5286 #define __pyx_n_s_tid __pyx_mstate_global->__pyx_n_s_tid
jpayne@68 5287 #define __pyx_n_s_traceback __pyx_mstate_global->__pyx_n_s_traceback
jpayne@68 5288 #define __pyx_n_s_truncate __pyx_mstate_global->__pyx_n_s_truncate
jpayne@68 5289 #define __pyx_n_s_type __pyx_mstate_global->__pyx_n_s_type
jpayne@68 5290 #define __pyx_n_s_value __pyx_mstate_global->__pyx_n_s_value
jpayne@68 5291 #define __pyx_n_s_verbosity __pyx_mstate_global->__pyx_n_s_verbosity
jpayne@68 5292 #define __pyx_n_u_w __pyx_mstate_global->__pyx_n_u_w
jpayne@68 5293 #define __pyx_n_s_warn __pyx_mstate_global->__pyx_n_s_warn
jpayne@68 5294 #define __pyx_n_s_warnings __pyx_mstate_global->__pyx_n_s_warnings
jpayne@68 5295 #define __pyx_n_s_whence __pyx_mstate_global->__pyx_n_s_whence
jpayne@68 5296 #define __pyx_n_s_writable __pyx_mstate_global->__pyx_n_s_writable
jpayne@68 5297 #define __pyx_n_s_write __pyx_mstate_global->__pyx_n_s_write
jpayne@68 5298 #define __pyx_kp_u_write_failed_on_HFile __pyx_mstate_global->__pyx_kp_u_write_failed_on_HFile
jpayne@68 5299 #define __pyx_n_s_writelines __pyx_mstate_global->__pyx_n_s_writelines
jpayne@68 5300 #define __pyx_int_0 __pyx_mstate_global->__pyx_int_0
jpayne@68 5301 #define __pyx_int_1 __pyx_mstate_global->__pyx_int_1
jpayne@68 5302 #define __pyx_int_neg_1 __pyx_mstate_global->__pyx_int_neg_1
jpayne@68 5303 #define __pyx_k__18 __pyx_mstate_global->__pyx_k__18
jpayne@68 5304 #define __pyx_k__41 __pyx_mstate_global->__pyx_k__41
jpayne@68 5305 #define __pyx_codeobj_ __pyx_mstate_global->__pyx_codeobj_
jpayne@68 5306 #define __pyx_tuple__5 __pyx_mstate_global->__pyx_tuple__5
jpayne@68 5307 #define __pyx_tuple__6 __pyx_mstate_global->__pyx_tuple__6
jpayne@68 5308 #define __pyx_tuple__39 __pyx_mstate_global->__pyx_tuple__39
jpayne@68 5309 #define __pyx_tuple__43 __pyx_mstate_global->__pyx_tuple__43
jpayne@68 5310 #define __pyx_tuple__44 __pyx_mstate_global->__pyx_tuple__44
jpayne@68 5311 #define __pyx_tuple__46 __pyx_mstate_global->__pyx_tuple__46
jpayne@68 5312 #define __pyx_tuple__47 __pyx_mstate_global->__pyx_tuple__47
jpayne@68 5313 #define __pyx_tuple__48 __pyx_mstate_global->__pyx_tuple__48
jpayne@68 5314 #define __pyx_tuple__49 __pyx_mstate_global->__pyx_tuple__49
jpayne@68 5315 #define __pyx_tuple__51 __pyx_mstate_global->__pyx_tuple__51
jpayne@68 5316 #define __pyx_tuple__53 __pyx_mstate_global->__pyx_tuple__53
jpayne@68 5317 #define __pyx_tuple__54 __pyx_mstate_global->__pyx_tuple__54
jpayne@68 5318 #define __pyx_tuple__57 __pyx_mstate_global->__pyx_tuple__57
jpayne@68 5319 #define __pyx_tuple__66 __pyx_mstate_global->__pyx_tuple__66
jpayne@68 5320 #define __pyx_tuple__67 __pyx_mstate_global->__pyx_tuple__67
jpayne@68 5321 #define __pyx_tuple__68 __pyx_mstate_global->__pyx_tuple__68
jpayne@68 5322 #define __pyx_tuple__69 __pyx_mstate_global->__pyx_tuple__69
jpayne@68 5323 #define __pyx_tuple__70 __pyx_mstate_global->__pyx_tuple__70
jpayne@68 5324 #define __pyx_tuple__71 __pyx_mstate_global->__pyx_tuple__71
jpayne@68 5325 #define __pyx_tuple__72 __pyx_mstate_global->__pyx_tuple__72
jpayne@68 5326 #define __pyx_tuple__73 __pyx_mstate_global->__pyx_tuple__73
jpayne@68 5327 #define __pyx_tuple__74 __pyx_mstate_global->__pyx_tuple__74
jpayne@68 5328 #define __pyx_tuple__75 __pyx_mstate_global->__pyx_tuple__75
jpayne@68 5329 #define __pyx_tuple__76 __pyx_mstate_global->__pyx_tuple__76
jpayne@68 5330 #define __pyx_tuple__77 __pyx_mstate_global->__pyx_tuple__77
jpayne@68 5331 #define __pyx_tuple__78 __pyx_mstate_global->__pyx_tuple__78
jpayne@68 5332 #define __pyx_tuple__79 __pyx_mstate_global->__pyx_tuple__79
jpayne@68 5333 #define __pyx_tuple__80 __pyx_mstate_global->__pyx_tuple__80
jpayne@68 5334 #define __pyx_tuple__81 __pyx_mstate_global->__pyx_tuple__81
jpayne@68 5335 #define __pyx_tuple__82 __pyx_mstate_global->__pyx_tuple__82
jpayne@68 5336 #define __pyx_tuple__83 __pyx_mstate_global->__pyx_tuple__83
jpayne@68 5337 #define __pyx_tuple__84 __pyx_mstate_global->__pyx_tuple__84
jpayne@68 5338 #define __pyx_tuple__85 __pyx_mstate_global->__pyx_tuple__85
jpayne@68 5339 #define __pyx_tuple__86 __pyx_mstate_global->__pyx_tuple__86
jpayne@68 5340 #define __pyx_tuple__87 __pyx_mstate_global->__pyx_tuple__87
jpayne@68 5341 #define __pyx_tuple__88 __pyx_mstate_global->__pyx_tuple__88
jpayne@68 5342 #define __pyx_tuple__89 __pyx_mstate_global->__pyx_tuple__89
jpayne@68 5343 #define __pyx_tuple__90 __pyx_mstate_global->__pyx_tuple__90
jpayne@68 5344 #define __pyx_tuple__91 __pyx_mstate_global->__pyx_tuple__91
jpayne@68 5345 #define __pyx_tuple__92 __pyx_mstate_global->__pyx_tuple__92
jpayne@68 5346 #define __pyx_tuple__93 __pyx_mstate_global->__pyx_tuple__93
jpayne@68 5347 #define __pyx_tuple__94 __pyx_mstate_global->__pyx_tuple__94
jpayne@68 5348 #define __pyx_tuple__95 __pyx_mstate_global->__pyx_tuple__95
jpayne@68 5349 #define __pyx_tuple__96 __pyx_mstate_global->__pyx_tuple__96
jpayne@68 5350 #define __pyx_codeobj__2 __pyx_mstate_global->__pyx_codeobj__2
jpayne@68 5351 #define __pyx_codeobj__3 __pyx_mstate_global->__pyx_codeobj__3
jpayne@68 5352 #define __pyx_codeobj__4 __pyx_mstate_global->__pyx_codeobj__4
jpayne@68 5353 #define __pyx_codeobj__7 __pyx_mstate_global->__pyx_codeobj__7
jpayne@68 5354 #define __pyx_codeobj__8 __pyx_mstate_global->__pyx_codeobj__8
jpayne@68 5355 #define __pyx_codeobj__9 __pyx_mstate_global->__pyx_codeobj__9
jpayne@68 5356 #define __pyx_codeobj__10 __pyx_mstate_global->__pyx_codeobj__10
jpayne@68 5357 #define __pyx_codeobj__11 __pyx_mstate_global->__pyx_codeobj__11
jpayne@68 5358 #define __pyx_codeobj__12 __pyx_mstate_global->__pyx_codeobj__12
jpayne@68 5359 #define __pyx_codeobj__14 __pyx_mstate_global->__pyx_codeobj__14
jpayne@68 5360 #define __pyx_codeobj__15 __pyx_mstate_global->__pyx_codeobj__15
jpayne@68 5361 #define __pyx_codeobj__16 __pyx_mstate_global->__pyx_codeobj__16
jpayne@68 5362 #define __pyx_codeobj__17 __pyx_mstate_global->__pyx_codeobj__17
jpayne@68 5363 #define __pyx_codeobj__19 __pyx_mstate_global->__pyx_codeobj__19
jpayne@68 5364 #define __pyx_codeobj__20 __pyx_mstate_global->__pyx_codeobj__20
jpayne@68 5365 #define __pyx_codeobj__21 __pyx_mstate_global->__pyx_codeobj__21
jpayne@68 5366 #define __pyx_codeobj__22 __pyx_mstate_global->__pyx_codeobj__22
jpayne@68 5367 #define __pyx_codeobj__23 __pyx_mstate_global->__pyx_codeobj__23
jpayne@68 5368 #define __pyx_codeobj__24 __pyx_mstate_global->__pyx_codeobj__24
jpayne@68 5369 #define __pyx_codeobj__25 __pyx_mstate_global->__pyx_codeobj__25
jpayne@68 5370 #define __pyx_codeobj__26 __pyx_mstate_global->__pyx_codeobj__26
jpayne@68 5371 #define __pyx_codeobj__27 __pyx_mstate_global->__pyx_codeobj__27
jpayne@68 5372 #define __pyx_codeobj__28 __pyx_mstate_global->__pyx_codeobj__28
jpayne@68 5373 #define __pyx_codeobj__29 __pyx_mstate_global->__pyx_codeobj__29
jpayne@68 5374 #define __pyx_codeobj__30 __pyx_mstate_global->__pyx_codeobj__30
jpayne@68 5375 #define __pyx_codeobj__31 __pyx_mstate_global->__pyx_codeobj__31
jpayne@68 5376 #define __pyx_codeobj__32 __pyx_mstate_global->__pyx_codeobj__32
jpayne@68 5377 #define __pyx_codeobj__33 __pyx_mstate_global->__pyx_codeobj__33
jpayne@68 5378 #define __pyx_codeobj__34 __pyx_mstate_global->__pyx_codeobj__34
jpayne@68 5379 #define __pyx_codeobj__35 __pyx_mstate_global->__pyx_codeobj__35
jpayne@68 5380 #define __pyx_codeobj__36 __pyx_mstate_global->__pyx_codeobj__36
jpayne@68 5381 #define __pyx_codeobj__37 __pyx_mstate_global->__pyx_codeobj__37
jpayne@68 5382 #define __pyx_codeobj__38 __pyx_mstate_global->__pyx_codeobj__38
jpayne@68 5383 #define __pyx_codeobj__40 __pyx_mstate_global->__pyx_codeobj__40
jpayne@68 5384 #define __pyx_codeobj__42 __pyx_mstate_global->__pyx_codeobj__42
jpayne@68 5385 #define __pyx_codeobj__45 __pyx_mstate_global->__pyx_codeobj__45
jpayne@68 5386 #define __pyx_codeobj__50 __pyx_mstate_global->__pyx_codeobj__50
jpayne@68 5387 #define __pyx_codeobj__52 __pyx_mstate_global->__pyx_codeobj__52
jpayne@68 5388 #define __pyx_codeobj__60 __pyx_mstate_global->__pyx_codeobj__60
jpayne@68 5389 #define __pyx_codeobj__61 __pyx_mstate_global->__pyx_codeobj__61
jpayne@68 5390 #define __pyx_codeobj__62 __pyx_mstate_global->__pyx_codeobj__62
jpayne@68 5391 #define __pyx_codeobj__63 __pyx_mstate_global->__pyx_codeobj__63
jpayne@68 5392 #define __pyx_codeobj__64 __pyx_mstate_global->__pyx_codeobj__64
jpayne@68 5393 #define __pyx_codeobj__65 __pyx_mstate_global->__pyx_codeobj__65
jpayne@68 5394 /* #### Code section: module_code ### */
jpayne@68 5395
jpayne@68 5396 /* "cpython/complex.pxd":19
jpayne@68 5397 *
jpayne@68 5398 * @property
jpayne@68 5399 * cdef inline double real(self) noexcept: # <<<<<<<<<<<<<<
jpayne@68 5400 * return self.cval.real
jpayne@68 5401 *
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jpayne@68 5403
jpayne@68 5404 static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4real_real(PyComplexObject *__pyx_v_self) {
jpayne@68 5405 double __pyx_r;
jpayne@68 5406
jpayne@68 5407 /* "cpython/complex.pxd":20
jpayne@68 5408 * @property
jpayne@68 5409 * cdef inline double real(self) noexcept:
jpayne@68 5410 * return self.cval.real # <<<<<<<<<<<<<<
jpayne@68 5411 *
jpayne@68 5412 * @property
jpayne@68 5413 */
jpayne@68 5414 __pyx_r = __pyx_v_self->cval.real;
jpayne@68 5415 goto __pyx_L0;
jpayne@68 5416
jpayne@68 5417 /* "cpython/complex.pxd":19
jpayne@68 5418 *
jpayne@68 5419 * @property
jpayne@68 5420 * cdef inline double real(self) noexcept: # <<<<<<<<<<<<<<
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jpayne@68 5422 *
jpayne@68 5423 */
jpayne@68 5424
jpayne@68 5425 /* function exit code */
jpayne@68 5426 __pyx_L0:;
jpayne@68 5427 return __pyx_r;
jpayne@68 5428 }
jpayne@68 5429
jpayne@68 5430 /* "cpython/complex.pxd":23
jpayne@68 5431 *
jpayne@68 5432 * @property
jpayne@68 5433 * cdef inline double imag(self) noexcept: # <<<<<<<<<<<<<<
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jpayne@68 5435 *
jpayne@68 5436 */
jpayne@68 5437
jpayne@68 5438 static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4imag_imag(PyComplexObject *__pyx_v_self) {
jpayne@68 5439 double __pyx_r;
jpayne@68 5440
jpayne@68 5441 /* "cpython/complex.pxd":24
jpayne@68 5442 * @property
jpayne@68 5443 * cdef inline double imag(self) noexcept:
jpayne@68 5444 * return self.cval.imag # <<<<<<<<<<<<<<
jpayne@68 5445 *
jpayne@68 5446 * # PyTypeObject PyComplex_Type
jpayne@68 5447 */
jpayne@68 5448 __pyx_r = __pyx_v_self->cval.imag;
jpayne@68 5449 goto __pyx_L0;
jpayne@68 5450
jpayne@68 5451 /* "cpython/complex.pxd":23
jpayne@68 5452 *
jpayne@68 5453 * @property
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jpayne@68 5519 /* "cpython/contextvars.pxd":121
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jpayne@68 5575 /* "cpython/contextvars.pxd":112
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jpayne@68 5577 *
jpayne@68 5578 * cdef inline object get_value(var, default_value=None): # <<<<<<<<<<<<<<
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jpayne@68 5598 * cdef inline object get_value_no_default(var, default_value=None): # <<<<<<<<<<<<<<
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jpayne@68 5603 static CYTHON_INLINE PyObject *__pyx_f_7cpython_11contextvars_get_value_no_default(PyObject *__pyx_v_var, struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default *__pyx_optional_args) {
jpayne@68 5604 PyObject *__pyx_v_default_value = ((PyObject *)Py_None);
jpayne@68 5605 PyObject *__pyx_v_value;
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jpayne@68 6117 (void)(memcpy(__pyx_v_op->data.as_chars, __pyx_v_self->data.as_chars, (Py_SIZE(((PyObject *)__pyx_v_op)) * __pyx_v_op->ob_descr->itemsize)));
jpayne@68 6118
jpayne@68 6119 /* "array.pxd":154
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jpayne@68 6121 * memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize)
jpayne@68 6122 * return op # <<<<<<<<<<<<<<
jpayne@68 6123 *
jpayne@68 6124 * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1:
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jpayne@68 6126 __Pyx_XDECREF((PyObject *)__pyx_r);
jpayne@68 6127 __Pyx_INCREF((PyObject *)__pyx_v_op);
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jpayne@68 6130
jpayne@68 6131 /* "array.pxd":150
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jpayne@68 6139 /* function exit code */
jpayne@68 6140 __pyx_L1_error:;
jpayne@68 6141 __Pyx_XDECREF(__pyx_t_1);
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jpayne@68 6143 __pyx_r = 0;
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jpayne@68 6145 __Pyx_XDECREF((PyObject *)__pyx_v_op);
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jpayne@68 6154 * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1: # <<<<<<<<<<<<<<
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jpayne@68 6158
jpayne@68 6159 static CYTHON_INLINE int __pyx_f_7cpython_5array_extend_buffer(arrayobject *__pyx_v_self, char *__pyx_v_stuff, Py_ssize_t __pyx_v_n) {
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jpayne@68 6161 Py_ssize_t __pyx_v_origsize;
jpayne@68 6162 int __pyx_r;
jpayne@68 6163 int __pyx_t_1;
jpayne@68 6164 int __pyx_lineno = 0;
jpayne@68 6165 const char *__pyx_filename = NULL;
jpayne@68 6166 int __pyx_clineno = 0;
jpayne@68 6167
jpayne@68 6168 /* "array.pxd":160
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jpayne@68 6170 * n: number of elements (not number of bytes!) """
jpayne@68 6171 * cdef Py_ssize_t itemsize = self.ob_descr.itemsize # <<<<<<<<<<<<<<
jpayne@68 6172 * cdef Py_ssize_t origsize = Py_SIZE(self)
jpayne@68 6173 * resize_smart(self, origsize + n)
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jpayne@68 6175 __pyx_t_1 = __pyx_v_self->ob_descr->itemsize;
jpayne@68 6176 __pyx_v_itemsize = __pyx_t_1;
jpayne@68 6177
jpayne@68 6178 /* "array.pxd":161
jpayne@68 6179 * n: number of elements (not number of bytes!) """
jpayne@68 6180 * cdef Py_ssize_t itemsize = self.ob_descr.itemsize
jpayne@68 6181 * cdef Py_ssize_t origsize = Py_SIZE(self) # <<<<<<<<<<<<<<
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jpayne@68 6185 __pyx_v_origsize = Py_SIZE(((PyObject *)__pyx_v_self));
jpayne@68 6186
jpayne@68 6187 /* "array.pxd":162
jpayne@68 6188 * cdef Py_ssize_t itemsize = self.ob_descr.itemsize
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jpayne@68 6190 * resize_smart(self, origsize + n) # <<<<<<<<<<<<<<
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jpayne@68 6192 * return 0
jpayne@68 6193 */
jpayne@68 6194 __pyx_t_1 = resize_smart(__pyx_v_self, (__pyx_v_origsize + __pyx_v_n)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(3, 162, __pyx_L1_error)
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jpayne@68 6196 /* "array.pxd":163
jpayne@68 6197 * cdef Py_ssize_t origsize = Py_SIZE(self)
jpayne@68 6198 * resize_smart(self, origsize + n)
jpayne@68 6199 * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) # <<<<<<<<<<<<<<
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jpayne@68 6201 *
jpayne@68 6202 */
jpayne@68 6203 (void)(memcpy((__pyx_v_self->data.as_chars + (__pyx_v_origsize * __pyx_v_itemsize)), __pyx_v_stuff, (__pyx_v_n * __pyx_v_itemsize)));
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jpayne@68 6205 /* "array.pxd":164
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jpayne@68 6207 * memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize)
jpayne@68 6208 * return 0 # <<<<<<<<<<<<<<
jpayne@68 6209 *
jpayne@68 6210 * cdef inline int extend(array self, array other) except -1:
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jpayne@68 6212 __pyx_r = 0;
jpayne@68 6213 goto __pyx_L0;
jpayne@68 6214
jpayne@68 6215 /* "array.pxd":156
jpayne@68 6216 * return op
jpayne@68 6217 *
jpayne@68 6218 * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1: # <<<<<<<<<<<<<<
jpayne@68 6219 * """ efficient appending of new stuff of same type
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jpayne@68 6222
jpayne@68 6223 /* function exit code */
jpayne@68 6224 __pyx_L1_error:;
jpayne@68 6225 __Pyx_AddTraceback("cpython.array.extend_buffer", __pyx_clineno, __pyx_lineno, __pyx_filename);
jpayne@68 6226 __pyx_r = -1;
jpayne@68 6227 __pyx_L0:;
jpayne@68 6228 return __pyx_r;
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jpayne@68 6230
jpayne@68 6231 /* "array.pxd":166
jpayne@68 6232 * return 0
jpayne@68 6233 *
jpayne@68 6234 * cdef inline int extend(array self, array other) except -1: # <<<<<<<<<<<<<<
jpayne@68 6235 * """ extend array with data from another array; types must match. """
jpayne@68 6236 * if self.ob_descr.typecode != other.ob_descr.typecode:
jpayne@68 6237 */
jpayne@68 6238
jpayne@68 6239 static CYTHON_INLINE int __pyx_f_7cpython_5array_extend(arrayobject *__pyx_v_self, arrayobject *__pyx_v_other) {
jpayne@68 6240 int __pyx_r;
jpayne@68 6241 int __pyx_t_1;
jpayne@68 6242 int __pyx_t_2;
jpayne@68 6243 int __pyx_lineno = 0;
jpayne@68 6244 const char *__pyx_filename = NULL;
jpayne@68 6245 int __pyx_clineno = 0;
jpayne@68 6246
jpayne@68 6247 /* "array.pxd":168
jpayne@68 6248 * cdef inline int extend(array self, array other) except -1:
jpayne@68 6249 * """ extend array with data from another array; types must match. """
jpayne@68 6250 * if self.ob_descr.typecode != other.ob_descr.typecode: # <<<<<<<<<<<<<<
jpayne@68 6251 * PyErr_BadArgument()
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jpayne@68 6254 __pyx_t_1 = (__pyx_v_self->ob_descr->typecode != __pyx_v_other->ob_descr->typecode);
jpayne@68 6255 if (__pyx_t_1) {
jpayne@68 6256
jpayne@68 6257 /* "array.pxd":169
jpayne@68 6258 * """ extend array with data from another array; types must match. """
jpayne@68 6259 * if self.ob_descr.typecode != other.ob_descr.typecode:
jpayne@68 6260 * PyErr_BadArgument() # <<<<<<<<<<<<<<
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jpayne@68 6264 __pyx_t_2 = PyErr_BadArgument(); if (unlikely(__pyx_t_2 == ((int)0))) __PYX_ERR(3, 169, __pyx_L1_error)
jpayne@68 6265
jpayne@68 6266 /* "array.pxd":168
jpayne@68 6267 * cdef inline int extend(array self, array other) except -1:
jpayne@68 6268 * """ extend array with data from another array; types must match. """
jpayne@68 6269 * if self.ob_descr.typecode != other.ob_descr.typecode: # <<<<<<<<<<<<<<
jpayne@68 6270 * PyErr_BadArgument()
jpayne@68 6271 * return extend_buffer(self, other.data.as_chars, Py_SIZE(other))
jpayne@68 6272 */
jpayne@68 6273 }
jpayne@68 6274
jpayne@68 6275 /* "array.pxd":170
jpayne@68 6276 * if self.ob_descr.typecode != other.ob_descr.typecode:
jpayne@68 6277 * PyErr_BadArgument()
jpayne@68 6278 * return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) # <<<<<<<<<<<<<<
jpayne@68 6279 *
jpayne@68 6280 * cdef inline void zero(array self) noexcept:
jpayne@68 6281 */
jpayne@68 6282 __pyx_t_2 = __pyx_f_7cpython_5array_extend_buffer(__pyx_v_self, __pyx_v_other->data.as_chars, Py_SIZE(((PyObject *)__pyx_v_other))); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(3, 170, __pyx_L1_error)
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jpayne@68 6284 goto __pyx_L0;
jpayne@68 6285
jpayne@68 6286 /* "array.pxd":166
jpayne@68 6287 * return 0
jpayne@68 6288 *
jpayne@68 6289 * cdef inline int extend(array self, array other) except -1: # <<<<<<<<<<<<<<
jpayne@68 6290 * """ extend array with data from another array; types must match. """
jpayne@68 6291 * if self.ob_descr.typecode != other.ob_descr.typecode:
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jpayne@68 6293
jpayne@68 6294 /* function exit code */
jpayne@68 6295 __pyx_L1_error:;
jpayne@68 6296 __Pyx_AddTraceback("cpython.array.extend", __pyx_clineno, __pyx_lineno, __pyx_filename);
jpayne@68 6297 __pyx_r = -1;
jpayne@68 6298 __pyx_L0:;
jpayne@68 6299 return __pyx_r;
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jpayne@68 6301
jpayne@68 6302 /* "array.pxd":172
jpayne@68 6303 * return extend_buffer(self, other.data.as_chars, Py_SIZE(other))
jpayne@68 6304 *
jpayne@68 6305 * cdef inline void zero(array self) noexcept: # <<<<<<<<<<<<<<
jpayne@68 6306 * """ set all elements of array to zero. """
jpayne@68 6307 * memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize)
jpayne@68 6308 */
jpayne@68 6309
jpayne@68 6310 static CYTHON_INLINE void __pyx_f_7cpython_5array_zero(arrayobject *__pyx_v_self) {
jpayne@68 6311
jpayne@68 6312 /* "array.pxd":174
jpayne@68 6313 * cdef inline void zero(array self) noexcept:
jpayne@68 6314 * """ set all elements of array to zero. """
jpayne@68 6315 * memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize) # <<<<<<<<<<<<<<
jpayne@68 6316 */
jpayne@68 6317 (void)(memset(__pyx_v_self->data.as_chars, 0, (Py_SIZE(((PyObject *)__pyx_v_self)) * __pyx_v_self->ob_descr->itemsize)));
jpayne@68 6318
jpayne@68 6319 /* "array.pxd":172
jpayne@68 6320 * return extend_buffer(self, other.data.as_chars, Py_SIZE(other))
jpayne@68 6321 *
jpayne@68 6322 * cdef inline void zero(array self) noexcept: # <<<<<<<<<<<<<<
jpayne@68 6323 * """ set all elements of array to zero. """
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jpayne@68 6325 */
jpayne@68 6326
jpayne@68 6327 /* function exit code */
jpayne@68 6328 }
jpayne@68 6329
jpayne@68 6330 /* "pysam/libchtslib.pyx":53
jpayne@68 6331 *
jpayne@68 6332 *
jpayne@68 6333 * cpdef set_verbosity(int verbosity): # <<<<<<<<<<<<<<
jpayne@68 6334 * """Set htslib's hts_verbose global variable to the specified value."""
jpayne@68 6335 * return hts_set_verbosity(verbosity)
jpayne@68 6336 */
jpayne@68 6337
jpayne@68 6338 static PyObject *__pyx_pw_5pysam_10libchtslib_1set_verbosity(PyObject *__pyx_self,
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jpayne@68 6340 PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds
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jpayne@68 6346 PyObject *__pyx_r = NULL;
jpayne@68 6347 __Pyx_TraceDeclarations
jpayne@68 6348 __Pyx_RefNannyDeclarations
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jpayne@68 6352 int __pyx_clineno = 0;
jpayne@68 6353 __Pyx_TraceFrameInit(__pyx_codeobj_)
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jpayne@68 6371 /* "pysam/libchtslib.pyx":53
jpayne@68 6372 *
jpayne@68 6373 *
jpayne@68 6374 * cpdef set_verbosity(int verbosity): # <<<<<<<<<<<<<<
jpayne@68 6375 * """Set htslib's hts_verbose global variable to the specified value."""
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jpayne@68 6378
jpayne@68 6379 /* function exit code */
jpayne@68 6380 __pyx_L1_error:;
jpayne@68 6381 __Pyx_XDECREF(__pyx_t_1);
jpayne@68 6382 __Pyx_AddTraceback("pysam.libchtslib.set_verbosity", __pyx_clineno, __pyx_lineno, __pyx_filename);
jpayne@68 6383 __pyx_r = 0;
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jpayne@68 6386 __Pyx_TraceReturn(__pyx_r, 0);
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jpayne@68 6393 #if CYTHON_METH_FASTCALL
jpayne@68 6394 PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds
jpayne@68 6395 #else
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jpayne@68 6399 PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_set_verbosity, "set_verbosity(int verbosity)\nSet htslib's hts_verbose global variable to the specified value.");
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jpayne@68 6415 const char *__pyx_filename = NULL;
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jpayne@68 6450 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "set_verbosity") < 0)) __PYX_ERR(0, 53, __pyx_L3_error)
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jpayne@68 6461 __Pyx_RaiseArgtupleInvalid("set_verbosity", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 53, __pyx_L3_error)
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jpayne@68 6471 __Pyx_AddTraceback("pysam.libchtslib.set_verbosity", __pyx_clineno, __pyx_lineno, __pyx_filename);
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jpayne@68 8612
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jpayne@68 8619 */
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jpayne@68 8621
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jpayne@68 8752 /* "pysam/libchtslib.pyx":167
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jpayne@68 8754 * if ret < 0:
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jpayne@68 8805
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jpayne@68 8835 /* "pysam/libchtslib.pyx":174
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jpayne@68 9353 CYTHON_UNUSED Py_ssize_t __pyx_nargs;
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jpayne@68 9358 const char *__pyx_filename = NULL;
jpayne@68 9359 int __pyx_clineno = 0;
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jpayne@68 9371 {
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jpayne@68 9374 Py_ssize_t kw_args;
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jpayne@68 9426 /* function exit code */
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jpayne@68 9442 Py_ssize_t __pyx_v_bytes_read;
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jpayne@68 9451 Py_ssize_t __pyx_t_5;
jpayne@68 9452 Py_ssize_t __pyx_t_6;
jpayne@68 9453 char *__pyx_t_7;
jpayne@68 9454 PyObject *__pyx_t_8 = NULL;
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jpayne@68 9457 const char *__pyx_filename = NULL;
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jpayne@68 9505 /* "pysam/libchtslib.pyx":205
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jpayne@68 9547 /* "pysam/libchtslib.pyx":212
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jpayne@68 9701 /* "pysam/libchtslib.pyx":226
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jpayne@68 10797 {
jpayne@68 10798 PyObject **__pyx_pyargnames[] = {&__pyx_n_s_b,0};
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jpayne@68 10800 Py_ssize_t kw_args;
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jpayne@68 10811 (void)__Pyx_Arg_NewRef_FASTCALL(values[0]);
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jpayne@68 10830 __Pyx_RaiseArgtupleInvalid("write", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 275, __pyx_L3_error)
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jpayne@68 10832 goto __pyx_L4_argument_unpacking_done;
jpayne@68 10833 __pyx_L3_error:;
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jpayne@68 10847 /* function exit code */
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jpayne@68 10852 {
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jpayne@68 10887
jpayne@68 10888 /* "pysam/libchtslib.pyx":277
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jpayne@68 10895 __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__5, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 277, __pyx_L1_error)
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jpayne@68 10899 __PYX_ERR(0, 277, __pyx_L1_error)
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jpayne@68 10901 /* "pysam/libchtslib.pyx":276
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jpayne@68 10932 if (unlikely(__pyx_t_1)) {
jpayne@68 10933
jpayne@68 10934 /* "pysam/libchtslib.pyx":282
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jpayne@68 10943 __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 282, __pyx_L1_error)
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jpayne@68 10948 __Pyx_GIVEREF(__pyx_kp_u_write_failed_on_HFile);
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jpayne@68 10950 __Pyx_INCREF(__pyx_v_self->name);
jpayne@68 10951 __Pyx_GIVEREF(__pyx_v_self->name);
jpayne@68 10952 if (__Pyx_PyTuple_SET_ITEM(__pyx_t_4, 2, __pyx_v_self->name)) __PYX_ERR(0, 282, __pyx_L1_error);
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jpayne@68 10995 __Pyx_XDECREF(__pyx_t_4);
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jpayne@68 10997 __pyx_r = NULL;
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jpayne@68 11004
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jpayne@68 11016 PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds
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jpayne@68 11024 #if CYTHON_METH_FASTCALL
jpayne@68 11025 PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds
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jpayne@68 11034 CYTHON_UNUSED PyObject *const *__pyx_kwvalues;
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jpayne@68 11036 int __pyx_lineno = 0;
jpayne@68 11037 const char *__pyx_filename = NULL;
jpayne@68 11038 int __pyx_clineno = 0;
jpayne@68 11039 PyObject *__pyx_r = 0;
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jpayne@68 11044 __pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
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jpayne@68 11050 {
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jpayne@68 11064 (void)__Pyx_Arg_NewRef_FASTCALL(values[0]);
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jpayne@68 11070 if (unlikely(kw_args > 0)) {
jpayne@68 11071 const Py_ssize_t kwd_pos_args = __pyx_nargs;
jpayne@68 11072 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "writelines") < 0)) __PYX_ERR(0, 286, __pyx_L3_error)
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jpayne@68 11074 } else if (unlikely(__pyx_nargs != 1)) {
jpayne@68 11075 goto __pyx_L5_argtuple_error;
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jpayne@68 11081 goto __pyx_L6_skip;
jpayne@68 11082 __pyx_L5_argtuple_error:;
jpayne@68 11083 __Pyx_RaiseArgtupleInvalid("writelines", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 286, __pyx_L3_error)
jpayne@68 11084 __pyx_L6_skip:;
jpayne@68 11085 goto __pyx_L4_argument_unpacking_done;
jpayne@68 11086 __pyx_L3_error:;
jpayne@68 11087 {
jpayne@68 11088 Py_ssize_t __pyx_temp;
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jpayne@68 11092 }
jpayne@68 11093 __Pyx_AddTraceback("pysam.libchtslib.HFile.writelines", __pyx_clineno, __pyx_lineno, __pyx_filename);
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jpayne@68 11098
jpayne@68 11099 /* function exit code */
jpayne@68 11100 {
jpayne@68 11101 Py_ssize_t __pyx_temp;
jpayne@68 11102 for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) {
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jpayne@68 11525 /* function exit code */
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jpayne@68 11681 /* function exit code */
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jpayne@68 12295 /* function exit code */
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jpayne@68 12449 __Pyx_RaiseArgtupleInvalid("__ne__", 1, 2, 2, __pyx_nargs); __PYX_ERR(0, 308, __pyx_L3_error)
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jpayne@68 12451 goto __pyx_L4_argument_unpacking_done;
jpayne@68 12452 __pyx_L3_error:;
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jpayne@68 15290 /* function exit code */
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jpayne@68 15307 *
jpayne@68 15308 * def seek(self, uint64_t offset, int whence=io.SEEK_SET): # <<<<<<<<<<<<<<
jpayne@68 15309 * """move file pointer to position *offset*, see :meth:`pysam.HTSFile.tell`."""
jpayne@68 15310 * if not self.is_open:
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jpayne@68 15313 /* Python wrapper */
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jpayne@68 15322 static PyMethodDef __pyx_mdef_5pysam_10libchtslib_7HTSFile_17seek = {"seek", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_17seek, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_16seek};
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jpayne@68 15331 int __pyx_v_whence;
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jpayne@68 15340 PyObject *__pyx_r = 0;
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jpayne@68 15342 __Pyx_RefNannySetupContext("seek (wrapper)", 0);
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jpayne@68 15350 __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
jpayne@68 15351 {
jpayne@68 15352 PyObject **__pyx_pyargnames[] = {&__pyx_n_s_offset,&__pyx_n_s_whence,0};
jpayne@68 15353 if (__pyx_kwds) {
jpayne@68 15354 Py_ssize_t kw_args;
jpayne@68 15355 switch (__pyx_nargs) {
jpayne@68 15356 case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1);
jpayne@68 15357 CYTHON_FALLTHROUGH;
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jpayne@68 15359 CYTHON_FALLTHROUGH;
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jpayne@68 15363 kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds);
jpayne@68 15364 switch (__pyx_nargs) {
jpayne@68 15365 case 0:
jpayne@68 15366 if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_offset)) != 0)) {
jpayne@68 15367 (void)__Pyx_Arg_NewRef_FASTCALL(values[0]);
jpayne@68 15368 kw_args--;
jpayne@68 15369 }
jpayne@68 15370 else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 483, __pyx_L3_error)
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jpayne@68 15372 CYTHON_FALLTHROUGH;
jpayne@68 15373 case 1:
jpayne@68 15374 if (kw_args > 0) {
jpayne@68 15375 PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_whence);
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jpayne@68 15379 }
jpayne@68 15380 if (unlikely(kw_args > 0)) {
jpayne@68 15381 const Py_ssize_t kwd_pos_args = __pyx_nargs;
jpayne@68 15382 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "seek") < 0)) __PYX_ERR(0, 483, __pyx_L3_error)
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jpayne@68 15384 } else {
jpayne@68 15385 switch (__pyx_nargs) {
jpayne@68 15386 case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1);
jpayne@68 15387 CYTHON_FALLTHROUGH;
jpayne@68 15388 case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0);
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jpayne@68 15391 }
jpayne@68 15392 }
jpayne@68 15393 __pyx_v_offset = __Pyx_PyInt_As_uint64_t(values[0]); if (unlikely((__pyx_v_offset == ((uint64_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 483, __pyx_L3_error)
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jpayne@68 15395 __pyx_v_whence = __Pyx_PyInt_As_int(values[1]); if (unlikely((__pyx_v_whence == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 483, __pyx_L3_error)
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jpayne@68 15400 goto __pyx_L6_skip;
jpayne@68 15401 __pyx_L5_argtuple_error:;
jpayne@68 15402 __Pyx_RaiseArgtupleInvalid("seek", 0, 1, 2, __pyx_nargs); __PYX_ERR(0, 483, __pyx_L3_error)
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jpayne@68 15404 goto __pyx_L4_argument_unpacking_done;
jpayne@68 15405 __pyx_L3_error:;
jpayne@68 15406 {
jpayne@68 15407 Py_ssize_t __pyx_temp;
jpayne@68 15408 for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) {
jpayne@68 15409 __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]);
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jpayne@68 15411 }
jpayne@68 15412 __Pyx_AddTraceback("pysam.libchtslib.HTSFile.seek", __pyx_clineno, __pyx_lineno, __pyx_filename);
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jpayne@68 15417
jpayne@68 15418 /* function exit code */
jpayne@68 15419 {
jpayne@68 15420 Py_ssize_t __pyx_temp;
jpayne@68 15421 for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) {
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jpayne@68 15425 __Pyx_RefNannyFinishContext();
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jpayne@68 15427 }
jpayne@68 15428
jpayne@68 15429 static PyObject *__pyx_pf_5pysam_10libchtslib_7HTSFile_16seek(struct __pyx_obj_5pysam_10libchtslib_HTSFile *__pyx_v_self, uint64_t __pyx_v_offset, int __pyx_v_whence) {
jpayne@68 15430 int64_t __pyx_v_ret;
jpayne@68 15431 PyObject *__pyx_r = NULL;
jpayne@68 15432 __Pyx_TraceDeclarations
jpayne@68 15433 __Pyx_RefNannyDeclarations
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jpayne@68 15435 int __pyx_t_2;
jpayne@68 15436 int __pyx_t_3;
jpayne@68 15437 int __pyx_t_4;
jpayne@68 15438 int64_t __pyx_t_5;
jpayne@68 15439 PyObject *__pyx_t_6 = NULL;
jpayne@68 15440 PyObject *__pyx_t_7 = NULL;
jpayne@68 15441 PyObject *__pyx_t_8 = NULL;
jpayne@68 15442 unsigned int __pyx_t_9;
jpayne@68 15443 int __pyx_lineno = 0;
jpayne@68 15444 const char *__pyx_filename = NULL;
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jpayne@68 15446 __Pyx_TraceFrameInit(__pyx_codeobj__42)
jpayne@68 15447 __Pyx_RefNannySetupContext("seek", 1);
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jpayne@68 15450 /* "pysam/libchtslib.pyx":485
jpayne@68 15451 * def seek(self, uint64_t offset, int whence=io.SEEK_SET):
jpayne@68 15452 * """move file pointer to position *offset*, see :meth:`pysam.HTSFile.tell`."""
jpayne@68 15453 * if not self.is_open: # <<<<<<<<<<<<<<
jpayne@68 15454 * raise ValueError('I/O operation on closed file')
jpayne@68 15455 * if self.is_stream:
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jpayne@68 15457 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_is_open); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 485, __pyx_L1_error)
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jpayne@68 15459 __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely((__pyx_t_2 < 0))) __PYX_ERR(0, 485, __pyx_L1_error)
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jpayne@68 15464 /* "pysam/libchtslib.pyx":486
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jpayne@68 15466 * if not self.is_open:
jpayne@68 15467 * raise ValueError('I/O operation on closed file') # <<<<<<<<<<<<<<
jpayne@68 15468 * if self.is_stream:
jpayne@68 15469 * raise IOError('seek not available in streams')
jpayne@68 15470 */
jpayne@68 15471 __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__43, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 486, __pyx_L1_error)
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jpayne@68 15473 __Pyx_Raise(__pyx_t_1, 0, 0, 0);
jpayne@68 15474 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
jpayne@68 15475 __PYX_ERR(0, 486, __pyx_L1_error)
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jpayne@68 15477 /* "pysam/libchtslib.pyx":485
jpayne@68 15478 * def seek(self, uint64_t offset, int whence=io.SEEK_SET):
jpayne@68 15479 * """move file pointer to position *offset*, see :meth:`pysam.HTSFile.tell`."""
jpayne@68 15480 * if not self.is_open: # <<<<<<<<<<<<<<
jpayne@68 15481 * raise ValueError('I/O operation on closed file')
jpayne@68 15482 * if self.is_stream:
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jpayne@68 15484 }
jpayne@68 15485
jpayne@68 15486 /* "pysam/libchtslib.pyx":487
jpayne@68 15487 * if not self.is_open:
jpayne@68 15488 * raise ValueError('I/O operation on closed file')
jpayne@68 15489 * if self.is_stream: # <<<<<<<<<<<<<<
jpayne@68 15490 * raise IOError('seek not available in streams')
jpayne@68 15491 *
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jpayne@68 15494
jpayne@68 15495 /* "pysam/libchtslib.pyx":488
jpayne@68 15496 * raise ValueError('I/O operation on closed file')
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jpayne@68 15498 * raise IOError('seek not available in streams') # <<<<<<<<<<<<<<
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jpayne@68 15504 __Pyx_Raise(__pyx_t_1, 0, 0, 0);
jpayne@68 15505 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
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jpayne@68 15508 /* "pysam/libchtslib.pyx":487
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jpayne@68 15511 * if self.is_stream: # <<<<<<<<<<<<<<
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jpayne@68 15513 *
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jpayne@68 15517 /* "pysam/libchtslib.pyx":490
jpayne@68 15518 * raise IOError('seek not available in streams')
jpayne@68 15519 *
jpayne@68 15520 * whence = libc_whence_from_io(whence) # <<<<<<<<<<<<<<
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jpayne@68 15525 __pyx_v_whence = __pyx_t_4;
jpayne@68 15526
jpayne@68 15527 /* "pysam/libchtslib.pyx":493
jpayne@68 15528 *
jpayne@68 15529 * cdef int64_t ret
jpayne@68 15530 * if self.htsfile.format.compression == bgzf: # <<<<<<<<<<<<<<
jpayne@68 15531 * with nogil:
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jpayne@68 15534 switch (__pyx_v_self->htsfile->format.compression) {
jpayne@68 15535 case bgzf:
jpayne@68 15536
jpayne@68 15537 /* "pysam/libchtslib.pyx":494
jpayne@68 15538 * cdef int64_t ret
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jpayne@68 15540 * with nogil: # <<<<<<<<<<<<<<
jpayne@68 15541 * ret = bgzf_seek(hts_get_bgzfp(self.htsfile), offset, whence)
jpayne@68 15542 * elif self.htsfile.format.compression == no_compression:
jpayne@68 15543 */
jpayne@68 15544 {
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jpayne@68 15546 PyThreadState *_save;
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jpayne@68 15548 Py_UNBLOCK_THREADS
jpayne@68 15549 __Pyx_FastGIL_Remember();
jpayne@68 15550 #endif
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jpayne@68 15552
jpayne@68 15553 /* "pysam/libchtslib.pyx":495
jpayne@68 15554 * if self.htsfile.format.compression == bgzf:
jpayne@68 15555 * with nogil:
jpayne@68 15556 * ret = bgzf_seek(hts_get_bgzfp(self.htsfile), offset, whence) # <<<<<<<<<<<<<<
jpayne@68 15557 * elif self.htsfile.format.compression == no_compression:
jpayne@68 15558 * ret = 0 if (hseek(self.htsfile.fp.hfile, offset, whence) >= 0) else -1
jpayne@68 15559 */
jpayne@68 15560 __pyx_v_ret = bgzf_seek(hts_get_bgzfp(__pyx_v_self->htsfile), __pyx_v_offset, __pyx_v_whence);
jpayne@68 15561 }
jpayne@68 15562
jpayne@68 15563 /* "pysam/libchtslib.pyx":494
jpayne@68 15564 * cdef int64_t ret
jpayne@68 15565 * if self.htsfile.format.compression == bgzf:
jpayne@68 15566 * with nogil: # <<<<<<<<<<<<<<
jpayne@68 15567 * ret = bgzf_seek(hts_get_bgzfp(self.htsfile), offset, whence)
jpayne@68 15568 * elif self.htsfile.format.compression == no_compression:
jpayne@68 15569 */
jpayne@68 15570 /*finally:*/ {
jpayne@68 15571 /*normal exit:*/{
jpayne@68 15572 #ifdef WITH_THREAD
jpayne@68 15573 __Pyx_FastGIL_Forget();
jpayne@68 15574 Py_BLOCK_THREADS
jpayne@68 15575 #endif
jpayne@68 15576 goto __pyx_L7;
jpayne@68 15577 }
jpayne@68 15578 __pyx_L7:;
jpayne@68 15579 }
jpayne@68 15580 }
jpayne@68 15581
jpayne@68 15582 /* "pysam/libchtslib.pyx":493
jpayne@68 15583 *
jpayne@68 15584 * cdef int64_t ret
jpayne@68 15585 * if self.htsfile.format.compression == bgzf: # <<<<<<<<<<<<<<
jpayne@68 15586 * with nogil:
jpayne@68 15587 * ret = bgzf_seek(hts_get_bgzfp(self.htsfile), offset, whence)
jpayne@68 15588 */
jpayne@68 15589 break;
jpayne@68 15590 case no_compression:
jpayne@68 15591
jpayne@68 15592 /* "pysam/libchtslib.pyx":497
jpayne@68 15593 * ret = bgzf_seek(hts_get_bgzfp(self.htsfile), offset, whence)
jpayne@68 15594 * elif self.htsfile.format.compression == no_compression:
jpayne@68 15595 * ret = 0 if (hseek(self.htsfile.fp.hfile, offset, whence) >= 0) else -1 # <<<<<<<<<<<<<<
jpayne@68 15596 * else:
jpayne@68 15597 * raise NotImplementedError("seek not implemented in files compressed by method {}".format(
jpayne@68 15598 */
jpayne@68 15599 __pyx_t_3 = (hseek(__pyx_v_self->htsfile->fp.hfile, __pyx_v_offset, __pyx_v_whence) >= 0);
jpayne@68 15600 if (__pyx_t_3) {
jpayne@68 15601 __pyx_t_5 = 0;
jpayne@68 15602 } else {
jpayne@68 15603 __pyx_t_5 = -1L;
jpayne@68 15604 }
jpayne@68 15605 __pyx_v_ret = __pyx_t_5;
jpayne@68 15606
jpayne@68 15607 /* "pysam/libchtslib.pyx":496
jpayne@68 15608 * with nogil:
jpayne@68 15609 * ret = bgzf_seek(hts_get_bgzfp(self.htsfile), offset, whence)
jpayne@68 15610 * elif self.htsfile.format.compression == no_compression: # <<<<<<<<<<<<<<
jpayne@68 15611 * ret = 0 if (hseek(self.htsfile.fp.hfile, offset, whence) >= 0) else -1
jpayne@68 15612 * else:
jpayne@68 15613 */
jpayne@68 15614 break;
jpayne@68 15615 default:
jpayne@68 15616
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jpayne@68 15717 * """return current file position, see :meth:`pysam.HTSFile.seek`."""
jpayne@68 15718 * if not self.is_open:
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jpayne@68 15721 /* Python wrapper */
jpayne@68 15722 static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_19tell(PyObject *__pyx_v_self,
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jpayne@68 15782 /* "pysam/libchtslib.pyx":505
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jpayne@68 15785 * if not self.is_open: # <<<<<<<<<<<<<<
jpayne@68 15786 * raise ValueError('I/O operation on closed file')
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jpayne@68 15837 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
jpayne@68 15838 __PYX_ERR(0, 508, __pyx_L1_error)
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jpayne@68 15840 /* "pysam/libchtslib.pyx":507
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jpayne@68 15842 * raise ValueError('I/O operation on closed file')
jpayne@68 15843 * if self.is_stream: # <<<<<<<<<<<<<<
jpayne@68 15844 * raise IOError('tell not available in streams')
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jpayne@68 15848
jpayne@68 15849 /* "pysam/libchtslib.pyx":511
jpayne@68 15850 *
jpayne@68 15851 * cdef int64_t ret
jpayne@68 15852 * if self.htsfile.format.compression == bgzf: # <<<<<<<<<<<<<<
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jpayne@68 15854 * ret = bgzf_tell(hts_get_bgzfp(self.htsfile))
jpayne@68 15855 */
jpayne@68 15856 __pyx_t_3 = (__pyx_v_self->htsfile->format.compression == bgzf);
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jpayne@68 15858
jpayne@68 15859 /* "pysam/libchtslib.pyx":512
jpayne@68 15860 * cdef int64_t ret
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jpayne@68 15862 * with nogil: # <<<<<<<<<<<<<<
jpayne@68 15863 * ret = bgzf_tell(hts_get_bgzfp(self.htsfile))
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jpayne@68 15866 {
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jpayne@68 15868 PyThreadState *_save;
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jpayne@68 15875 /* "pysam/libchtslib.pyx":513
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jpayne@68 15882 __pyx_v_ret = bgzf_tell(hts_get_bgzfp(__pyx_v_self->htsfile));
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jpayne@68 15889 * ret = bgzf_tell(hts_get_bgzfp(self.htsfile))
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jpayne@68 15895 __Pyx_FastGIL_Forget();
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jpayne@68 15902 }
jpayne@68 15903
jpayne@68 15904 /* "pysam/libchtslib.pyx":511
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jpayne@68 15914 /* "pysam/libchtslib.pyx":514
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jpayne@68 15923
jpayne@68 15924 /* "pysam/libchtslib.pyx":515
jpayne@68 15925 * ret = bgzf_tell(hts_get_bgzfp(self.htsfile))
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jpayne@68 15927 * ret = htell(self.htsfile.fp.hfile) # <<<<<<<<<<<<<<
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jpayne@68 15929 * with nogil:
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jpayne@68 15931 __pyx_v_ret = htell(__pyx_v_self->htsfile->fp.hfile);
jpayne@68 15932
jpayne@68 15933 /* "pysam/libchtslib.pyx":514
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jpayne@68 15937 * ret = htell(self.htsfile.fp.hfile)
jpayne@68 15938 * elif self.htsfile.format.format == cram:
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jpayne@68 15940 goto __pyx_L5;
jpayne@68 15941 }
jpayne@68 15942
jpayne@68 15943 /* "pysam/libchtslib.pyx":516
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jpayne@68 15946 * elif self.htsfile.format.format == cram: # <<<<<<<<<<<<<<
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jpayne@68 15950 __pyx_t_3 = (__pyx_v_self->htsfile->format.format == cram);
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jpayne@68 15952
jpayne@68 15953 /* "pysam/libchtslib.pyx":517
jpayne@68 15954 * ret = htell(self.htsfile.fp.hfile)
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jpayne@68 15956 * with nogil: # <<<<<<<<<<<<<<
jpayne@68 15957 * ret = htell(cram_fd_get_fp(self.htsfile.fp.cram))
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jpayne@68 15960 {
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jpayne@68 15962 PyThreadState *_save;
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jpayne@68 15969 /* "pysam/libchtslib.pyx":518
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jpayne@68 16090 /* function exit code */
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jpayne@68 16093 __Pyx_XDECREF(__pyx_t_4);
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jpayne@68 16115 char *__pyx_v_cmode;
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jpayne@68 16117 int __pyx_v_dup_fd;
jpayne@68 16118 int __pyx_v_threads;
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jpayne@68 16121 hFILE *__pyx_v_hfile;
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jpayne@68 16129 int __pyx_t_4;
jpayne@68 16130 PyObject *__pyx_t_5 = NULL;
jpayne@68 16131 PyObject *__pyx_t_6 = NULL;
jpayne@68 16132 unsigned int __pyx_t_7;
jpayne@68 16133 PyObject *__pyx_t_8 = NULL;
jpayne@68 16134 PyObject *__pyx_t_9 = NULL;
jpayne@68 16135 PyObject *__pyx_t_10 = NULL;
jpayne@68 16136 PyObject *__pyx_t_11 = NULL;
jpayne@68 16137 PyObject *__pyx_t_12 = NULL;
jpayne@68 16138 PyObject *__pyx_t_13 = NULL;
jpayne@68 16139 PyObject *__pyx_t_14 = NULL;
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jpayne@68 16149 * cdef char *cmode = self.mode # <<<<<<<<<<<<<<
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jpayne@68 16157 * cdef int fd, dup_fd, threads
jpayne@68 16158 *
jpayne@68 16159 * threads = self.threads - 1 # <<<<<<<<<<<<<<
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jpayne@68 16163 __pyx_t_2 = __Pyx_PyInt_SubtractObjC(__pyx_v_self->threads, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 530, __pyx_L1_error)
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jpayne@68 16165 __pyx_t_3 = __Pyx_PyInt_As_int(__pyx_t_2); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 530, __pyx_L1_error)
jpayne@68 16166 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
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jpayne@68 16169 /* "pysam/libchtslib.pyx":531
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jpayne@68 16171 * threads = self.threads - 1
jpayne@68 16172 * if isinstance(self.filename, bytes): # <<<<<<<<<<<<<<
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jpayne@68 16176 __pyx_t_2 = __pyx_v_self->filename;
jpayne@68 16177 __Pyx_INCREF(__pyx_t_2);
jpayne@68 16178 __pyx_t_4 = PyBytes_Check(__pyx_t_2);
jpayne@68 16179 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
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jpayne@68 16182 /* "pysam/libchtslib.pyx":532
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jpayne@68 16199 {
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jpayne@68 16201 PyThreadState *_save;
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jpayne@68 16208 /* "pysam/libchtslib.pyx":534
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jpayne@68 16215 __pyx_v_htsfile = hts_open(__pyx_v_cfilename, __pyx_v_cmode);
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jpayne@68 16227 /* "pysam/libchtslib.pyx":536
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jpayne@68 16252 __pyx_r = __pyx_v_htsfile;
jpayne@68 16253 goto __pyx_L4_return;
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jpayne@68 16256 /* "pysam/libchtslib.pyx":533
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jpayne@68 16266 __Pyx_FastGIL_Forget();
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jpayne@68 16276 * threads = self.threads - 1
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jpayne@68 16278 * cfilename = self.filename
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jpayne@68 16296
jpayne@68 16297 /* "pysam/libchtslib.pyx":540
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jpayne@68 16307 /* "pysam/libchtslib.pyx":539
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jpayne@68 16360 * else:
jpayne@68 16361 */
jpayne@68 16362 if (__pyx_v_self->duplicate_filehandle) {
jpayne@68 16363
jpayne@68 16364 /* "pysam/libchtslib.pyx":545
jpayne@68 16365 *
jpayne@68 16366 * if self.duplicate_filehandle:
jpayne@68 16367 * dup_fd = dup(fd) # <<<<<<<<<<<<<<
jpayne@68 16368 * else:
jpayne@68 16369 * dup_fd = fd
jpayne@68 16370 */
jpayne@68 16371 __pyx_v_dup_fd = dup(__pyx_v_fd);
jpayne@68 16372
jpayne@68 16373 /* "pysam/libchtslib.pyx":544
jpayne@68 16374 * fd = self.filename.fileno()
jpayne@68 16375 *
jpayne@68 16376 * if self.duplicate_filehandle: # <<<<<<<<<<<<<<
jpayne@68 16377 * dup_fd = dup(fd)
jpayne@68 16378 * else:
jpayne@68 16379 */
jpayne@68 16380 goto __pyx_L9;
jpayne@68 16381 }
jpayne@68 16382
jpayne@68 16383 /* "pysam/libchtslib.pyx":547
jpayne@68 16384 * dup_fd = dup(fd)
jpayne@68 16385 * else:
jpayne@68 16386 * dup_fd = fd # <<<<<<<<<<<<<<
jpayne@68 16387 *
jpayne@68 16388 * # Replicate mode normalization done in hts_open_format
jpayne@68 16389 */
jpayne@68 16390 /*else*/ {
jpayne@68 16391 __pyx_v_dup_fd = __pyx_v_fd;
jpayne@68 16392 }
jpayne@68 16393 __pyx_L9:;
jpayne@68 16394
jpayne@68 16395 /* "pysam/libchtslib.pyx":550
jpayne@68 16396 *
jpayne@68 16397 * # Replicate mode normalization done in hts_open_format
jpayne@68 16398 * smode = self.mode.replace(b'b', b'').replace(b'c', b'') # <<<<<<<<<<<<<<
jpayne@68 16399 * if b'b' in self.mode:
jpayne@68 16400 * smode += b'b'
jpayne@68 16401 */
jpayne@68 16402 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_self->mode, __pyx_n_s_replace); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 550, __pyx_L1_error)
jpayne@68 16403 __Pyx_GOTREF(__pyx_t_2);
jpayne@68 16404 __pyx_t_5 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_tuple__47, NULL); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 550, __pyx_L1_error)
jpayne@68 16405 __Pyx_GOTREF(__pyx_t_5);
jpayne@68 16406 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 16407 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_replace); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 550, __pyx_L1_error)
jpayne@68 16408 __Pyx_GOTREF(__pyx_t_2);
jpayne@68 16409 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
jpayne@68 16410 __pyx_t_5 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_tuple__48, NULL); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 550, __pyx_L1_error)
jpayne@68 16411 __Pyx_GOTREF(__pyx_t_5);
jpayne@68 16412 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 16413 __pyx_v_smode = __pyx_t_5;
jpayne@68 16414 __pyx_t_5 = 0;
jpayne@68 16415
jpayne@68 16416 /* "pysam/libchtslib.pyx":551
jpayne@68 16417 * # Replicate mode normalization done in hts_open_format
jpayne@68 16418 * smode = self.mode.replace(b'b', b'').replace(b'c', b'')
jpayne@68 16419 * if b'b' in self.mode: # <<<<<<<<<<<<<<
jpayne@68 16420 * smode += b'b'
jpayne@68 16421 * elif b'c' in self.mode:
jpayne@68 16422 */
jpayne@68 16423 __pyx_t_4 = (__Pyx_PySequence_ContainsTF(__pyx_n_b_b, __pyx_v_self->mode, Py_EQ)); if (unlikely((__pyx_t_4 < 0))) __PYX_ERR(0, 551, __pyx_L1_error)
jpayne@68 16424 if (__pyx_t_4) {
jpayne@68 16425
jpayne@68 16426 /* "pysam/libchtslib.pyx":552
jpayne@68 16427 * smode = self.mode.replace(b'b', b'').replace(b'c', b'')
jpayne@68 16428 * if b'b' in self.mode:
jpayne@68 16429 * smode += b'b' # <<<<<<<<<<<<<<
jpayne@68 16430 * elif b'c' in self.mode:
jpayne@68 16431 * smode += b'c'
jpayne@68 16432 */
jpayne@68 16433 __pyx_t_5 = PyNumber_InPlaceAdd(__pyx_v_smode, __pyx_n_b_b); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 552, __pyx_L1_error)
jpayne@68 16434 __Pyx_GOTREF(__pyx_t_5);
jpayne@68 16435 __Pyx_DECREF_SET(__pyx_v_smode, __pyx_t_5);
jpayne@68 16436 __pyx_t_5 = 0;
jpayne@68 16437
jpayne@68 16438 /* "pysam/libchtslib.pyx":551
jpayne@68 16439 * # Replicate mode normalization done in hts_open_format
jpayne@68 16440 * smode = self.mode.replace(b'b', b'').replace(b'c', b'')
jpayne@68 16441 * if b'b' in self.mode: # <<<<<<<<<<<<<<
jpayne@68 16442 * smode += b'b'
jpayne@68 16443 * elif b'c' in self.mode:
jpayne@68 16444 */
jpayne@68 16445 goto __pyx_L10;
jpayne@68 16446 }
jpayne@68 16447
jpayne@68 16448 /* "pysam/libchtslib.pyx":553
jpayne@68 16449 * if b'b' in self.mode:
jpayne@68 16450 * smode += b'b'
jpayne@68 16451 * elif b'c' in self.mode: # <<<<<<<<<<<<<<
jpayne@68 16452 * smode += b'c'
jpayne@68 16453 * cmode = smode
jpayne@68 16454 */
jpayne@68 16455 __pyx_t_4 = (__Pyx_PySequence_ContainsTF(__pyx_n_b_c, __pyx_v_self->mode, Py_EQ)); if (unlikely((__pyx_t_4 < 0))) __PYX_ERR(0, 553, __pyx_L1_error)
jpayne@68 16456 if (__pyx_t_4) {
jpayne@68 16457
jpayne@68 16458 /* "pysam/libchtslib.pyx":554
jpayne@68 16459 * smode += b'b'
jpayne@68 16460 * elif b'c' in self.mode:
jpayne@68 16461 * smode += b'c' # <<<<<<<<<<<<<<
jpayne@68 16462 * cmode = smode
jpayne@68 16463 *
jpayne@68 16464 */
jpayne@68 16465 __pyx_t_5 = PyNumber_InPlaceAdd(__pyx_v_smode, __pyx_n_b_c); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 554, __pyx_L1_error)
jpayne@68 16466 __Pyx_GOTREF(__pyx_t_5);
jpayne@68 16467 __Pyx_DECREF_SET(__pyx_v_smode, __pyx_t_5);
jpayne@68 16468 __pyx_t_5 = 0;
jpayne@68 16469
jpayne@68 16470 /* "pysam/libchtslib.pyx":553
jpayne@68 16471 * if b'b' in self.mode:
jpayne@68 16472 * smode += b'b'
jpayne@68 16473 * elif b'c' in self.mode: # <<<<<<<<<<<<<<
jpayne@68 16474 * smode += b'c'
jpayne@68 16475 * cmode = smode
jpayne@68 16476 */
jpayne@68 16477 }
jpayne@68 16478 __pyx_L10:;
jpayne@68 16479
jpayne@68 16480 /* "pysam/libchtslib.pyx":555
jpayne@68 16481 * elif b'c' in self.mode:
jpayne@68 16482 * smode += b'c'
jpayne@68 16483 * cmode = smode # <<<<<<<<<<<<<<
jpayne@68 16484 *
jpayne@68 16485 * hfile = hdopen(dup_fd, cmode)
jpayne@68 16486 */
jpayne@68 16487 __pyx_t_1 = __Pyx_PyObject_AsWritableString(__pyx_v_smode); if (unlikely((!__pyx_t_1) && PyErr_Occurred())) __PYX_ERR(0, 555, __pyx_L1_error)
jpayne@68 16488 __pyx_v_cmode = __pyx_t_1;
jpayne@68 16489
jpayne@68 16490 /* "pysam/libchtslib.pyx":557
jpayne@68 16491 * cmode = smode
jpayne@68 16492 *
jpayne@68 16493 * hfile = hdopen(dup_fd, cmode) # <<<<<<<<<<<<<<
jpayne@68 16494 * if hfile == NULL:
jpayne@68 16495 * raise IOError('Cannot create hfile')
jpayne@68 16496 */
jpayne@68 16497 __pyx_v_hfile = hdopen(__pyx_v_dup_fd, __pyx_v_cmode);
jpayne@68 16498
jpayne@68 16499 /* "pysam/libchtslib.pyx":558
jpayne@68 16500 *
jpayne@68 16501 * hfile = hdopen(dup_fd, cmode)
jpayne@68 16502 * if hfile == NULL: # <<<<<<<<<<<<<<
jpayne@68 16503 * raise IOError('Cannot create hfile')
jpayne@68 16504 *
jpayne@68 16505 */
jpayne@68 16506 __pyx_t_4 = (__pyx_v_hfile == NULL);
jpayne@68 16507 if (unlikely(__pyx_t_4)) {
jpayne@68 16508
jpayne@68 16509 /* "pysam/libchtslib.pyx":559
jpayne@68 16510 * hfile = hdopen(dup_fd, cmode)
jpayne@68 16511 * if hfile == NULL:
jpayne@68 16512 * raise IOError('Cannot create hfile') # <<<<<<<<<<<<<<
jpayne@68 16513 *
jpayne@68 16514 * try:
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jpayne@68 16516 __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_IOError, __pyx_tuple__49, NULL); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 559, __pyx_L1_error)
jpayne@68 16517 __Pyx_GOTREF(__pyx_t_5);
jpayne@68 16518 __Pyx_Raise(__pyx_t_5, 0, 0, 0);
jpayne@68 16519 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
jpayne@68 16520 __PYX_ERR(0, 559, __pyx_L1_error)
jpayne@68 16521
jpayne@68 16522 /* "pysam/libchtslib.pyx":558
jpayne@68 16523 *
jpayne@68 16524 * hfile = hdopen(dup_fd, cmode)
jpayne@68 16525 * if hfile == NULL: # <<<<<<<<<<<<<<
jpayne@68 16526 * raise IOError('Cannot create hfile')
jpayne@68 16527 *
jpayne@68 16528 */
jpayne@68 16529 }
jpayne@68 16530
jpayne@68 16531 /* "pysam/libchtslib.pyx":561
jpayne@68 16532 * raise IOError('Cannot create hfile')
jpayne@68 16533 *
jpayne@68 16534 * try: # <<<<<<<<<<<<<<
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jpayne@68 16536 * filename = str(self.filename.name)
jpayne@68 16537 */
jpayne@68 16538 {
jpayne@68 16539 __Pyx_PyThreadState_declare
jpayne@68 16540 __Pyx_PyThreadState_assign
jpayne@68 16541 __Pyx_ExceptionSave(&__pyx_t_8, &__pyx_t_9, &__pyx_t_10);
jpayne@68 16542 __Pyx_XGOTREF(__pyx_t_8);
jpayne@68 16543 __Pyx_XGOTREF(__pyx_t_9);
jpayne@68 16544 __Pyx_XGOTREF(__pyx_t_10);
jpayne@68 16545 /*try:*/ {
jpayne@68 16546
jpayne@68 16547 /* "pysam/libchtslib.pyx":563
jpayne@68 16548 * try:
jpayne@68 16549 * # filename.name can be an int
jpayne@68 16550 * filename = str(self.filename.name) # <<<<<<<<<<<<<<
jpayne@68 16551 * except AttributeError:
jpayne@68 16552 * filename = '<fd:{}>'.format(fd)
jpayne@68 16553 */
jpayne@68 16554 __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_self->filename, __pyx_n_s_name); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 563, __pyx_L12_error)
jpayne@68 16555 __Pyx_GOTREF(__pyx_t_5);
jpayne@68 16556 __pyx_t_2 = __Pyx_PyObject_Unicode(__pyx_t_5); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 563, __pyx_L12_error)
jpayne@68 16557 __Pyx_GOTREF(__pyx_t_2);
jpayne@68 16558 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
jpayne@68 16559 __pyx_v_filename = __pyx_t_2;
jpayne@68 16560 __pyx_t_2 = 0;
jpayne@68 16561
jpayne@68 16562 /* "pysam/libchtslib.pyx":561
jpayne@68 16563 * raise IOError('Cannot create hfile')
jpayne@68 16564 *
jpayne@68 16565 * try: # <<<<<<<<<<<<<<
jpayne@68 16566 * # filename.name can be an int
jpayne@68 16567 * filename = str(self.filename.name)
jpayne@68 16568 */
jpayne@68 16569 }
jpayne@68 16570 __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
jpayne@68 16571 __Pyx_XDECREF(__pyx_t_9); __pyx_t_9 = 0;
jpayne@68 16572 __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
jpayne@68 16573 goto __pyx_L17_try_end;
jpayne@68 16574 __pyx_L12_error:;
jpayne@68 16575 __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 16576 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
jpayne@68 16577 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
jpayne@68 16578
jpayne@68 16579 /* "pysam/libchtslib.pyx":564
jpayne@68 16580 * # filename.name can be an int
jpayne@68 16581 * filename = str(self.filename.name)
jpayne@68 16582 * except AttributeError: # <<<<<<<<<<<<<<
jpayne@68 16583 * filename = '<fd:{}>'.format(fd)
jpayne@68 16584 *
jpayne@68 16585 */
jpayne@68 16586 __pyx_t_3 = __Pyx_PyErr_ExceptionMatches(__pyx_builtin_AttributeError);
jpayne@68 16587 if (__pyx_t_3) {
jpayne@68 16588 __Pyx_AddTraceback("pysam.libchtslib.HTSFile._open_htsfile", __pyx_clineno, __pyx_lineno, __pyx_filename);
jpayne@68 16589 if (__Pyx_GetException(&__pyx_t_2, &__pyx_t_5, &__pyx_t_6) < 0) __PYX_ERR(0, 564, __pyx_L14_except_error)
jpayne@68 16590 __Pyx_XGOTREF(__pyx_t_2);
jpayne@68 16591 __Pyx_XGOTREF(__pyx_t_5);
jpayne@68 16592 __Pyx_XGOTREF(__pyx_t_6);
jpayne@68 16593
jpayne@68 16594 /* "pysam/libchtslib.pyx":565
jpayne@68 16595 * filename = str(self.filename.name)
jpayne@68 16596 * except AttributeError:
jpayne@68 16597 * filename = '<fd:{}>'.format(fd) # <<<<<<<<<<<<<<
jpayne@68 16598 *
jpayne@68 16599 * filename = encode_filename(filename)
jpayne@68 16600 */
jpayne@68 16601 __pyx_t_12 = __Pyx_PyObject_GetAttrStr(__pyx_kp_u_fd, __pyx_n_s_format); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 565, __pyx_L14_except_error)
jpayne@68 16602 __Pyx_GOTREF(__pyx_t_12);
jpayne@68 16603 __pyx_t_13 = __Pyx_PyInt_From_int(__pyx_v_fd); if (unlikely(!__pyx_t_13)) __PYX_ERR(0, 565, __pyx_L14_except_error)
jpayne@68 16604 __Pyx_GOTREF(__pyx_t_13);
jpayne@68 16605 __pyx_t_14 = NULL;
jpayne@68 16606 __pyx_t_7 = 0;
jpayne@68 16607 #if CYTHON_UNPACK_METHODS
jpayne@68 16608 if (likely(PyMethod_Check(__pyx_t_12))) {
jpayne@68 16609 __pyx_t_14 = PyMethod_GET_SELF(__pyx_t_12);
jpayne@68 16610 if (likely(__pyx_t_14)) {
jpayne@68 16611 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_12);
jpayne@68 16612 __Pyx_INCREF(__pyx_t_14);
jpayne@68 16613 __Pyx_INCREF(function);
jpayne@68 16614 __Pyx_DECREF_SET(__pyx_t_12, function);
jpayne@68 16615 __pyx_t_7 = 1;
jpayne@68 16616 }
jpayne@68 16617 }
jpayne@68 16618 #endif
jpayne@68 16619 {
jpayne@68 16620 PyObject *__pyx_callargs[2] = {__pyx_t_14, __pyx_t_13};
jpayne@68 16621 __pyx_t_11 = __Pyx_PyObject_FastCall(__pyx_t_12, __pyx_callargs+1-__pyx_t_7, 1+__pyx_t_7);
jpayne@68 16622 __Pyx_XDECREF(__pyx_t_14); __pyx_t_14 = 0;
jpayne@68 16623 __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
jpayne@68 16624 if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 565, __pyx_L14_except_error)
jpayne@68 16625 __Pyx_GOTREF(__pyx_t_11);
jpayne@68 16626 __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
jpayne@68 16627 }
jpayne@68 16628 __Pyx_XDECREF_SET(__pyx_v_filename, __pyx_t_11);
jpayne@68 16629 __pyx_t_11 = 0;
jpayne@68 16630 __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 16631 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
jpayne@68 16632 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
jpayne@68 16633 goto __pyx_L13_exception_handled;
jpayne@68 16634 }
jpayne@68 16635 goto __pyx_L14_except_error;
jpayne@68 16636
jpayne@68 16637 /* "pysam/libchtslib.pyx":561
jpayne@68 16638 * raise IOError('Cannot create hfile')
jpayne@68 16639 *
jpayne@68 16640 * try: # <<<<<<<<<<<<<<
jpayne@68 16641 * # filename.name can be an int
jpayne@68 16642 * filename = str(self.filename.name)
jpayne@68 16643 */
jpayne@68 16644 __pyx_L14_except_error:;
jpayne@68 16645 __Pyx_XGIVEREF(__pyx_t_8);
jpayne@68 16646 __Pyx_XGIVEREF(__pyx_t_9);
jpayne@68 16647 __Pyx_XGIVEREF(__pyx_t_10);
jpayne@68 16648 __Pyx_ExceptionReset(__pyx_t_8, __pyx_t_9, __pyx_t_10);
jpayne@68 16649 goto __pyx_L1_error;
jpayne@68 16650 __pyx_L13_exception_handled:;
jpayne@68 16651 __Pyx_XGIVEREF(__pyx_t_8);
jpayne@68 16652 __Pyx_XGIVEREF(__pyx_t_9);
jpayne@68 16653 __Pyx_XGIVEREF(__pyx_t_10);
jpayne@68 16654 __Pyx_ExceptionReset(__pyx_t_8, __pyx_t_9, __pyx_t_10);
jpayne@68 16655 __pyx_L17_try_end:;
jpayne@68 16656 }
jpayne@68 16657
jpayne@68 16658 /* "pysam/libchtslib.pyx":567
jpayne@68 16659 * filename = '<fd:{}>'.format(fd)
jpayne@68 16660 *
jpayne@68 16661 * filename = encode_filename(filename) # <<<<<<<<<<<<<<
jpayne@68 16662 * cfilename = filename
jpayne@68 16663 * with nogil:
jpayne@68 16664 */
jpayne@68 16665 __pyx_t_6 = __pyx_f_5pysam_9libcutils_encode_filename(__pyx_v_filename); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 567, __pyx_L1_error)
jpayne@68 16666 __Pyx_GOTREF(__pyx_t_6);
jpayne@68 16667 __Pyx_DECREF_SET(__pyx_v_filename, __pyx_t_6);
jpayne@68 16668 __pyx_t_6 = 0;
jpayne@68 16669
jpayne@68 16670 /* "pysam/libchtslib.pyx":568
jpayne@68 16671 *
jpayne@68 16672 * filename = encode_filename(filename)
jpayne@68 16673 * cfilename = filename # <<<<<<<<<<<<<<
jpayne@68 16674 * with nogil:
jpayne@68 16675 * htsfile = hts_hopen(hfile, cfilename, cmode)
jpayne@68 16676 */
jpayne@68 16677 __pyx_t_1 = __Pyx_PyObject_AsWritableString(__pyx_v_filename); if (unlikely((!__pyx_t_1) && PyErr_Occurred())) __PYX_ERR(0, 568, __pyx_L1_error)
jpayne@68 16678 __pyx_v_cfilename = __pyx_t_1;
jpayne@68 16679
jpayne@68 16680 /* "pysam/libchtslib.pyx":569
jpayne@68 16681 * filename = encode_filename(filename)
jpayne@68 16682 * cfilename = filename
jpayne@68 16683 * with nogil: # <<<<<<<<<<<<<<
jpayne@68 16684 * htsfile = hts_hopen(hfile, cfilename, cmode)
jpayne@68 16685 * if htsfile != NULL:
jpayne@68 16686 */
jpayne@68 16687 {
jpayne@68 16688 #ifdef WITH_THREAD
jpayne@68 16689 PyThreadState *_save;
jpayne@68 16690 _save = NULL;
jpayne@68 16691 Py_UNBLOCK_THREADS
jpayne@68 16692 __Pyx_FastGIL_Remember();
jpayne@68 16693 #endif
jpayne@68 16694 /*try:*/ {
jpayne@68 16695
jpayne@68 16696 /* "pysam/libchtslib.pyx":570
jpayne@68 16697 * cfilename = filename
jpayne@68 16698 * with nogil:
jpayne@68 16699 * htsfile = hts_hopen(hfile, cfilename, cmode) # <<<<<<<<<<<<<<
jpayne@68 16700 * if htsfile != NULL:
jpayne@68 16701 * hts_set_threads(htsfile, threads)
jpayne@68 16702 */
jpayne@68 16703 __pyx_v_htsfile = hts_hopen(__pyx_v_hfile, __pyx_v_cfilename, __pyx_v_cmode);
jpayne@68 16704
jpayne@68 16705 /* "pysam/libchtslib.pyx":571
jpayne@68 16706 * with nogil:
jpayne@68 16707 * htsfile = hts_hopen(hfile, cfilename, cmode)
jpayne@68 16708 * if htsfile != NULL: # <<<<<<<<<<<<<<
jpayne@68 16709 * hts_set_threads(htsfile, threads)
jpayne@68 16710 * return htsfile
jpayne@68 16711 */
jpayne@68 16712 __pyx_t_4 = (__pyx_v_htsfile != NULL);
jpayne@68 16713 if (__pyx_t_4) {
jpayne@68 16714
jpayne@68 16715 /* "pysam/libchtslib.pyx":572
jpayne@68 16716 * htsfile = hts_hopen(hfile, cfilename, cmode)
jpayne@68 16717 * if htsfile != NULL:
jpayne@68 16718 * hts_set_threads(htsfile, threads) # <<<<<<<<<<<<<<
jpayne@68 16719 * return htsfile
jpayne@68 16720 *
jpayne@68 16721 */
jpayne@68 16722 (void)(hts_set_threads(__pyx_v_htsfile, __pyx_v_threads));
jpayne@68 16723
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jpayne@68 17032 /* "pysam/libchtslib.pyx":586
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jpayne@68 17075 __pyx_t_5 = __Pyx_PyObject_FastCall(__pyx_t_7, __pyx_callargs+1-__pyx_t_9, 1+__pyx_t_9);
jpayne@68 17076 __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
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jpayne@68 17079 __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
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jpayne@68 17081 __pyx_t_7 = __Pyx_PyObject_CallOneArg(__pyx_builtin_RuntimeError, __pyx_t_5); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 587, __pyx_L1_error)
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jpayne@68 17083 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
jpayne@68 17084 __Pyx_Raise(__pyx_t_7, 0, 0, 0);
jpayne@68 17085 __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
jpayne@68 17086 __PYX_ERR(0, 587, __pyx_L1_error)
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jpayne@68 17090 * rval = hts_opt_add(&opts, format_option)
jpayne@68 17091 * if rval != 0: # <<<<<<<<<<<<<<
jpayne@68 17092 * if opts != NULL:
jpayne@68 17093 * hts_opt_free(opts)
jpayne@68 17094 */
jpayne@68 17095 }
jpayne@68 17096
jpayne@68 17097 /* "pysam/libchtslib.pyx":582
jpayne@68 17098 *
jpayne@68 17099 * if format_options:
jpayne@68 17100 * for format_option in format_options: # <<<<<<<<<<<<<<
jpayne@68 17101 * rval = hts_opt_add(&opts, format_option)
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jpayne@68 17104 }
jpayne@68 17105 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 17106
jpayne@68 17107 /* "pysam/libchtslib.pyx":588
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jpayne@68 17109 * raise RuntimeError('Invalid format option ({}) specified'.format(format_option))
jpayne@68 17110 * if opts != NULL: # <<<<<<<<<<<<<<
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jpayne@68 17112 * if rval != 0:
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jpayne@68 17114 __pyx_t_1 = (__pyx_v_opts != NULL);
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jpayne@68 17116
jpayne@68 17117 /* "pysam/libchtslib.pyx":589
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jpayne@68 17120 * rval = hts_opt_apply(self.htsfile, opts) # <<<<<<<<<<<<<<
jpayne@68 17121 * if rval != 0:
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jpayne@68 17123 */
jpayne@68 17124 __pyx_v_rval = hts_opt_apply(__pyx_v_self->htsfile, __pyx_v_opts);
jpayne@68 17125
jpayne@68 17126 /* "pysam/libchtslib.pyx":590
jpayne@68 17127 * if opts != NULL:
jpayne@68 17128 * rval = hts_opt_apply(self.htsfile, opts)
jpayne@68 17129 * if rval != 0: # <<<<<<<<<<<<<<
jpayne@68 17130 * hts_opt_free(opts)
jpayne@68 17131 * raise RuntimeError('An error occurred while applying the requested format options')
jpayne@68 17132 */
jpayne@68 17133 __pyx_t_1 = (__pyx_v_rval != 0);
jpayne@68 17134 if (unlikely(__pyx_t_1)) {
jpayne@68 17135
jpayne@68 17136 /* "pysam/libchtslib.pyx":591
jpayne@68 17137 * rval = hts_opt_apply(self.htsfile, opts)
jpayne@68 17138 * if rval != 0:
jpayne@68 17139 * hts_opt_free(opts) # <<<<<<<<<<<<<<
jpayne@68 17140 * raise RuntimeError('An error occurred while applying the requested format options')
jpayne@68 17141 * hts_opt_free(opts)
jpayne@68 17142 */
jpayne@68 17143 hts_opt_free(__pyx_v_opts);
jpayne@68 17144
jpayne@68 17145 /* "pysam/libchtslib.pyx":592
jpayne@68 17146 * if rval != 0:
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jpayne@68 17148 * raise RuntimeError('An error occurred while applying the requested format options') # <<<<<<<<<<<<<<
jpayne@68 17149 * hts_opt_free(opts)
jpayne@68 17150 *
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jpayne@68 17154 __Pyx_Raise(__pyx_t_2, 0, 0, 0);
jpayne@68 17155 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 17156 __PYX_ERR(0, 592, __pyx_L1_error)
jpayne@68 17157
jpayne@68 17158 /* "pysam/libchtslib.pyx":590
jpayne@68 17159 * if opts != NULL:
jpayne@68 17160 * rval = hts_opt_apply(self.htsfile, opts)
jpayne@68 17161 * if rval != 0: # <<<<<<<<<<<<<<
jpayne@68 17162 * hts_opt_free(opts)
jpayne@68 17163 * raise RuntimeError('An error occurred while applying the requested format options')
jpayne@68 17164 */
jpayne@68 17165 }
jpayne@68 17166
jpayne@68 17167 /* "pysam/libchtslib.pyx":593
jpayne@68 17168 * hts_opt_free(opts)
jpayne@68 17169 * raise RuntimeError('An error occurred while applying the requested format options')
jpayne@68 17170 * hts_opt_free(opts) # <<<<<<<<<<<<<<
jpayne@68 17171 *
jpayne@68 17172 * def parse_region(self, contig=None, start=None, stop=None,
jpayne@68 17173 */
jpayne@68 17174 hts_opt_free(__pyx_v_opts);
jpayne@68 17175
jpayne@68 17176 /* "pysam/libchtslib.pyx":588
jpayne@68 17177 * hts_opt_free(opts)
jpayne@68 17178 * raise RuntimeError('Invalid format option ({}) specified'.format(format_option))
jpayne@68 17179 * if opts != NULL: # <<<<<<<<<<<<<<
jpayne@68 17180 * rval = hts_opt_apply(self.htsfile, opts)
jpayne@68 17181 * if rval != 0:
jpayne@68 17182 */
jpayne@68 17183 }
jpayne@68 17184
jpayne@68 17185 /* "pysam/libchtslib.pyx":581
jpayne@68 17186 * cdef hts_opt *opts = NULL
jpayne@68 17187 *
jpayne@68 17188 * if format_options: # <<<<<<<<<<<<<<
jpayne@68 17189 * for format_option in format_options:
jpayne@68 17190 * rval = hts_opt_add(&opts, format_option)
jpayne@68 17191 */
jpayne@68 17192 }
jpayne@68 17193
jpayne@68 17194 /* "pysam/libchtslib.pyx":575
jpayne@68 17195 * return htsfile
jpayne@68 17196 *
jpayne@68 17197 * def add_hts_options(self, format_options=None): # <<<<<<<<<<<<<<
jpayne@68 17198 * """Given a list of key=value format option strings, add them to an open htsFile
jpayne@68 17199 * """
jpayne@68 17200 */
jpayne@68 17201
jpayne@68 17202 /* function exit code */
jpayne@68 17203 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
jpayne@68 17204 goto __pyx_L0;
jpayne@68 17205 __pyx_L1_error:;
jpayne@68 17206 __Pyx_XDECREF(__pyx_t_2);
jpayne@68 17207 __Pyx_XDECREF(__pyx_t_5);
jpayne@68 17208 __Pyx_XDECREF(__pyx_t_7);
jpayne@68 17209 __Pyx_XDECREF(__pyx_t_8);
jpayne@68 17210 __Pyx_AddTraceback("pysam.libchtslib.HTSFile.add_hts_options", __pyx_clineno, __pyx_lineno, __pyx_filename);
jpayne@68 17211 __pyx_r = NULL;
jpayne@68 17212 __pyx_L0:;
jpayne@68 17213 __Pyx_XDECREF(__pyx_v_format_option);
jpayne@68 17214 __Pyx_XGIVEREF(__pyx_r);
jpayne@68 17215 __Pyx_TraceReturn(__pyx_r, 0);
jpayne@68 17216 __Pyx_RefNannyFinishContext();
jpayne@68 17217 return __pyx_r;
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jpayne@68 17219
jpayne@68 17220 /* "pysam/libchtslib.pyx":595
jpayne@68 17221 * hts_opt_free(opts)
jpayne@68 17222 *
jpayne@68 17223 * def parse_region(self, contig=None, start=None, stop=None, # <<<<<<<<<<<<<<
jpayne@68 17224 * region=None, tid=None,
jpayne@68 17225 * reference=None, end=None):
jpayne@68 17226 */
jpayne@68 17227
jpayne@68 17228 /* Python wrapper */
jpayne@68 17229 static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_23parse_region(PyObject *__pyx_v_self,
jpayne@68 17230 #if CYTHON_METH_FASTCALL
jpayne@68 17231 PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds
jpayne@68 17232 #else
jpayne@68 17233 PyObject *__pyx_args, PyObject *__pyx_kwds
jpayne@68 17234 #endif
jpayne@68 17235 ); /*proto*/
jpayne@68 17236 PyDoc_STRVAR(__pyx_doc_5pysam_10libchtslib_7HTSFile_22parse_region, "HTSFile.parse_region(self, contig=None, start=None, stop=None, region=None, tid=None, reference=None, end=None)\nparse alternative ways to specify a genomic region. A region can\n either be specified by :term:`contig`, `start` and\n `stop`. `start` and `stop` denote 0-based, half-open\n intervals. :term:`reference` and `end` are also accepted for\n backward compatibility as synonyms for :term:`contig` and\n `stop`, respectively.\n\n Alternatively, a samtools :term:`region` string can be\n supplied.\n\n If any of the coordinates are missing they will be replaced by\n the minimum (`start`) or maximum (`stop`) coordinate.\n\n Note that region strings are 1-based inclusive, while `start`\n and `stop` denote an interval in 0-based, half-open\n coordinates (like BED files and Python slices).\n\n If `contig` or `region` or are ``*``, unmapped reads at the end\n of a BAM file will be returned. Setting either to ``.`` will\n iterate from the beginning of the file.\n\n Returns\n -------\n\n tuple :\n a tuple of `flag`, :term:`tid`, `start` and\n `stop`. The flag indicates whether no coordinates were\n supplied and the genomic region is the complete genomic space.\n\n Raises\n ------\n\n ValueError\n for invalid or out of bounds regions.\n\n ");
jpayne@68 17237 static PyMethodDef __pyx_mdef_5pysam_10libchtslib_7HTSFile_23parse_region = {"parse_region", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_23parse_region, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_22parse_region};
jpayne@68 17238 static PyObject *__pyx_pw_5pysam_10libchtslib_7HTSFile_23parse_region(PyObject *__pyx_v_self,
jpayne@68 17239 #if CYTHON_METH_FASTCALL
jpayne@68 17240 PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds
jpayne@68 17241 #else
jpayne@68 17242 PyObject *__pyx_args, PyObject *__pyx_kwds
jpayne@68 17243 #endif
jpayne@68 17244 ) {
jpayne@68 17245 PyObject *__pyx_v_contig = 0;
jpayne@68 17246 PyObject *__pyx_v_start = 0;
jpayne@68 17247 PyObject *__pyx_v_stop = 0;
jpayne@68 17248 PyObject *__pyx_v_region = 0;
jpayne@68 17249 PyObject *__pyx_v_tid = 0;
jpayne@68 17250 PyObject *__pyx_v_reference = 0;
jpayne@68 17251 PyObject *__pyx_v_end = 0;
jpayne@68 17252 #if !CYTHON_METH_FASTCALL
jpayne@68 17253 CYTHON_UNUSED Py_ssize_t __pyx_nargs;
jpayne@68 17254 #endif
jpayne@68 17255 CYTHON_UNUSED PyObject *const *__pyx_kwvalues;
jpayne@68 17256 PyObject* values[7] = {0,0,0,0,0,0,0};
jpayne@68 17257 int __pyx_lineno = 0;
jpayne@68 17258 const char *__pyx_filename = NULL;
jpayne@68 17259 int __pyx_clineno = 0;
jpayne@68 17260 PyObject *__pyx_r = 0;
jpayne@68 17261 __Pyx_RefNannyDeclarations
jpayne@68 17262 __Pyx_RefNannySetupContext("parse_region (wrapper)", 0);
jpayne@68 17263 #if !CYTHON_METH_FASTCALL
jpayne@68 17264 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 17265 __pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
jpayne@68 17266 #else
jpayne@68 17267 __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
jpayne@68 17268 #endif
jpayne@68 17269 #endif
jpayne@68 17270 __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
jpayne@68 17271 {
jpayne@68 17272 PyObject **__pyx_pyargnames[] = {&__pyx_n_s_contig,&__pyx_n_s_start,&__pyx_n_s_stop,&__pyx_n_s_region,&__pyx_n_s_tid,&__pyx_n_s_reference,&__pyx_n_s_end,0};
jpayne@68 17273 values[0] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None));
jpayne@68 17274 values[1] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None));
jpayne@68 17275 values[2] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None));
jpayne@68 17276
jpayne@68 17277 /* "pysam/libchtslib.pyx":596
jpayne@68 17278 *
jpayne@68 17279 * def parse_region(self, contig=None, start=None, stop=None,
jpayne@68 17280 * region=None, tid=None, # <<<<<<<<<<<<<<
jpayne@68 17281 * reference=None, end=None):
jpayne@68 17282 * """parse alternative ways to specify a genomic region. A region can
jpayne@68 17283 */
jpayne@68 17284 values[3] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None));
jpayne@68 17285 values[4] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None));
jpayne@68 17286
jpayne@68 17287 /* "pysam/libchtslib.pyx":597
jpayne@68 17288 * def parse_region(self, contig=None, start=None, stop=None,
jpayne@68 17289 * region=None, tid=None,
jpayne@68 17290 * reference=None, end=None): # <<<<<<<<<<<<<<
jpayne@68 17291 * """parse alternative ways to specify a genomic region. A region can
jpayne@68 17292 * either be specified by :term:`contig`, `start` and
jpayne@68 17293 */
jpayne@68 17294 values[5] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None));
jpayne@68 17295 values[6] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)Py_None));
jpayne@68 17296 if (__pyx_kwds) {
jpayne@68 17297 Py_ssize_t kw_args;
jpayne@68 17298 switch (__pyx_nargs) {
jpayne@68 17299 case 7: values[6] = __Pyx_Arg_FASTCALL(__pyx_args, 6);
jpayne@68 17300 CYTHON_FALLTHROUGH;
jpayne@68 17301 case 6: values[5] = __Pyx_Arg_FASTCALL(__pyx_args, 5);
jpayne@68 17302 CYTHON_FALLTHROUGH;
jpayne@68 17303 case 5: values[4] = __Pyx_Arg_FASTCALL(__pyx_args, 4);
jpayne@68 17304 CYTHON_FALLTHROUGH;
jpayne@68 17305 case 4: values[3] = __Pyx_Arg_FASTCALL(__pyx_args, 3);
jpayne@68 17306 CYTHON_FALLTHROUGH;
jpayne@68 17307 case 3: values[2] = __Pyx_Arg_FASTCALL(__pyx_args, 2);
jpayne@68 17308 CYTHON_FALLTHROUGH;
jpayne@68 17309 case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1);
jpayne@68 17310 CYTHON_FALLTHROUGH;
jpayne@68 17311 case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0);
jpayne@68 17312 CYTHON_FALLTHROUGH;
jpayne@68 17313 case 0: break;
jpayne@68 17314 default: goto __pyx_L5_argtuple_error;
jpayne@68 17315 }
jpayne@68 17316 kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds);
jpayne@68 17317 switch (__pyx_nargs) {
jpayne@68 17318 case 0:
jpayne@68 17319 if (kw_args > 0) {
jpayne@68 17320 PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_contig);
jpayne@68 17321 if (value) { values[0] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; }
jpayne@68 17322 else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error)
jpayne@68 17323 }
jpayne@68 17324 CYTHON_FALLTHROUGH;
jpayne@68 17325 case 1:
jpayne@68 17326 if (kw_args > 0) {
jpayne@68 17327 PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_start);
jpayne@68 17328 if (value) { values[1] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; }
jpayne@68 17329 else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error)
jpayne@68 17330 }
jpayne@68 17331 CYTHON_FALLTHROUGH;
jpayne@68 17332 case 2:
jpayne@68 17333 if (kw_args > 0) {
jpayne@68 17334 PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_stop);
jpayne@68 17335 if (value) { values[2] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; }
jpayne@68 17336 else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error)
jpayne@68 17337 }
jpayne@68 17338 CYTHON_FALLTHROUGH;
jpayne@68 17339 case 3:
jpayne@68 17340 if (kw_args > 0) {
jpayne@68 17341 PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_region);
jpayne@68 17342 if (value) { values[3] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; }
jpayne@68 17343 else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error)
jpayne@68 17344 }
jpayne@68 17345 CYTHON_FALLTHROUGH;
jpayne@68 17346 case 4:
jpayne@68 17347 if (kw_args > 0) {
jpayne@68 17348 PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_tid);
jpayne@68 17349 if (value) { values[4] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; }
jpayne@68 17350 else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error)
jpayne@68 17351 }
jpayne@68 17352 CYTHON_FALLTHROUGH;
jpayne@68 17353 case 5:
jpayne@68 17354 if (kw_args > 0) {
jpayne@68 17355 PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_reference);
jpayne@68 17356 if (value) { values[5] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; }
jpayne@68 17357 else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error)
jpayne@68 17358 }
jpayne@68 17359 CYTHON_FALLTHROUGH;
jpayne@68 17360 case 6:
jpayne@68 17361 if (kw_args > 0) {
jpayne@68 17362 PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_end);
jpayne@68 17363 if (value) { values[6] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; }
jpayne@68 17364 else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 595, __pyx_L3_error)
jpayne@68 17365 }
jpayne@68 17366 }
jpayne@68 17367 if (unlikely(kw_args > 0)) {
jpayne@68 17368 const Py_ssize_t kwd_pos_args = __pyx_nargs;
jpayne@68 17369 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "parse_region") < 0)) __PYX_ERR(0, 595, __pyx_L3_error)
jpayne@68 17370 }
jpayne@68 17371 } else {
jpayne@68 17372 switch (__pyx_nargs) {
jpayne@68 17373 case 7: values[6] = __Pyx_Arg_FASTCALL(__pyx_args, 6);
jpayne@68 17374 CYTHON_FALLTHROUGH;
jpayne@68 17375 case 6: values[5] = __Pyx_Arg_FASTCALL(__pyx_args, 5);
jpayne@68 17376 CYTHON_FALLTHROUGH;
jpayne@68 17377 case 5: values[4] = __Pyx_Arg_FASTCALL(__pyx_args, 4);
jpayne@68 17378 CYTHON_FALLTHROUGH;
jpayne@68 17379 case 4: values[3] = __Pyx_Arg_FASTCALL(__pyx_args, 3);
jpayne@68 17380 CYTHON_FALLTHROUGH;
jpayne@68 17381 case 3: values[2] = __Pyx_Arg_FASTCALL(__pyx_args, 2);
jpayne@68 17382 CYTHON_FALLTHROUGH;
jpayne@68 17383 case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1);
jpayne@68 17384 CYTHON_FALLTHROUGH;
jpayne@68 17385 case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0);
jpayne@68 17386 CYTHON_FALLTHROUGH;
jpayne@68 17387 case 0: break;
jpayne@68 17388 default: goto __pyx_L5_argtuple_error;
jpayne@68 17389 }
jpayne@68 17390 }
jpayne@68 17391 __pyx_v_contig = values[0];
jpayne@68 17392 __pyx_v_start = values[1];
jpayne@68 17393 __pyx_v_stop = values[2];
jpayne@68 17394 __pyx_v_region = values[3];
jpayne@68 17395 __pyx_v_tid = values[4];
jpayne@68 17396 __pyx_v_reference = values[5];
jpayne@68 17397 __pyx_v_end = values[6];
jpayne@68 17398 }
jpayne@68 17399 goto __pyx_L6_skip;
jpayne@68 17400 __pyx_L5_argtuple_error:;
jpayne@68 17401 __Pyx_RaiseArgtupleInvalid("parse_region", 0, 0, 7, __pyx_nargs); __PYX_ERR(0, 595, __pyx_L3_error)
jpayne@68 17402 __pyx_L6_skip:;
jpayne@68 17403 goto __pyx_L4_argument_unpacking_done;
jpayne@68 17404 __pyx_L3_error:;
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jpayne@68 17425 /* function exit code */
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jpayne@68 17438 int32_t __pyx_v_rstart;
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jpayne@68 17449 PyObject *__pyx_t_5 = NULL;
jpayne@68 17450 PyObject *__pyx_t_6 = NULL;
jpayne@68 17451 PyObject *__pyx_t_7 = NULL;
jpayne@68 17452 int32_t __pyx_t_8;
jpayne@68 17453 int __pyx_t_9;
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jpayne@68 17480 /* "pysam/libchtslib.pyx":639
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jpayne@68 17670
jpayne@68 17671 /* "pysam/libchtslib.pyx":653
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jpayne@68 17673 * rstart = 0
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jpayne@68 17703 __Pyx_XGOTREF(__pyx_t_7);
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jpayne@68 17706 /* "pysam/libchtslib.pyx":656
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jpayne@68 17715
jpayne@68 17716 /* "pysam/libchtslib.pyx":655
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jpayne@68 17718 * if start is not None:
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jpayne@68 17724 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
jpayne@68 17725 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
jpayne@68 17726 __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
jpayne@68 17727 goto __pyx_L17_try_end;
jpayne@68 17728 __pyx_L12_error:;
jpayne@68 17729 __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 17730 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
jpayne@68 17731
jpayne@68 17732 /* "pysam/libchtslib.pyx":657
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jpayne@68 17741 __Pyx_AddTraceback("pysam.libchtslib.HTSFile.parse_region", __pyx_clineno, __pyx_lineno, __pyx_filename);
jpayne@68 17742 if (__Pyx_GetException(&__pyx_t_4, &__pyx_t_2, &__pyx_t_10) < 0) __PYX_ERR(0, 657, __pyx_L14_except_error)
jpayne@68 17743 __Pyx_XGOTREF(__pyx_t_4);
jpayne@68 17744 __Pyx_XGOTREF(__pyx_t_2);
jpayne@68 17745 __Pyx_XGOTREF(__pyx_t_10);
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jpayne@68 17747 /* "pysam/libchtslib.pyx":658
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jpayne@68 17755 __Pyx_GOTREF(__pyx_t_11);
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jpayne@68 17758 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
jpayne@68 17759 __Pyx_Raise(__pyx_t_12, 0, 0, 0);
jpayne@68 17760 __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
jpayne@68 17761 __PYX_ERR(0, 658, __pyx_L14_except_error)
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jpayne@68 17764
jpayne@68 17765 /* "pysam/libchtslib.pyx":655
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jpayne@68 17773 __Pyx_XGIVEREF(__pyx_t_5);
jpayne@68 17774 __Pyx_XGIVEREF(__pyx_t_6);
jpayne@68 17775 __Pyx_XGIVEREF(__pyx_t_7);
jpayne@68 17776 __Pyx_ExceptionReset(__pyx_t_5, __pyx_t_6, __pyx_t_7);
jpayne@68 17777 goto __pyx_L1_error;
jpayne@68 17778 __pyx_L17_try_end:;
jpayne@68 17779 }
jpayne@68 17780
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jpayne@68 17782 * rstart = 0
jpayne@68 17783 * rstop = MAX_POS
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jpayne@68 17789
jpayne@68 17790 /* "pysam/libchtslib.pyx":660
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jpayne@68 17800 /* "pysam/libchtslib.pyx":661
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jpayne@68 17811 __Pyx_XGOTREF(__pyx_t_7);
jpayne@68 17812 __Pyx_XGOTREF(__pyx_t_6);
jpayne@68 17813 __Pyx_XGOTREF(__pyx_t_5);
jpayne@68 17814 /*try:*/ {
jpayne@68 17815
jpayne@68 17816 /* "pysam/libchtslib.pyx":662
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jpayne@68 17825
jpayne@68 17826 /* "pysam/libchtslib.pyx":661
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jpayne@68 17835 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
jpayne@68 17836 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
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jpayne@68 17838 __pyx_L21_error:;
jpayne@68 17839 __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
jpayne@68 17840 __Pyx_XDECREF(__pyx_t_11); __pyx_t_11 = 0;
jpayne@68 17841 __Pyx_XDECREF(__pyx_t_12); __pyx_t_12 = 0;
jpayne@68 17842 __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
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jpayne@68 17844
jpayne@68 17845 /* "pysam/libchtslib.pyx":663
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jpayne@68 17854 __Pyx_AddTraceback("pysam.libchtslib.HTSFile.parse_region", __pyx_clineno, __pyx_lineno, __pyx_filename);
jpayne@68 17855 if (__Pyx_GetException(&__pyx_t_10, &__pyx_t_2, &__pyx_t_4) < 0) __PYX_ERR(0, 663, __pyx_L23_except_error)
jpayne@68 17856 __Pyx_XGOTREF(__pyx_t_10);
jpayne@68 17857 __Pyx_XGOTREF(__pyx_t_2);
jpayne@68 17858 __Pyx_XGOTREF(__pyx_t_4);
jpayne@68 17859
jpayne@68 17860 /* "pysam/libchtslib.pyx":664
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jpayne@68 17868 __Pyx_GOTREF(__pyx_t_12);
jpayne@68 17869 __pyx_t_11 = __Pyx_PyObject_CallOneArg(__pyx_builtin_ValueError, __pyx_t_12); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 664, __pyx_L23_except_error)
jpayne@68 17870 __Pyx_GOTREF(__pyx_t_11);
jpayne@68 17871 __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
jpayne@68 17872 __Pyx_Raise(__pyx_t_11, 0, 0, 0);
jpayne@68 17873 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
jpayne@68 17874 __PYX_ERR(0, 664, __pyx_L23_except_error)
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jpayne@68 17877
jpayne@68 17878 /* "pysam/libchtslib.pyx":661
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jpayne@68 17880 * if stop is not None:
jpayne@68 17881 * try: # <<<<<<<<<<<<<<
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jpayne@68 17886 __Pyx_XGIVEREF(__pyx_t_7);
jpayne@68 17887 __Pyx_XGIVEREF(__pyx_t_6);
jpayne@68 17888 __Pyx_XGIVEREF(__pyx_t_5);
jpayne@68 17889 __Pyx_ExceptionReset(__pyx_t_7, __pyx_t_6, __pyx_t_5);
jpayne@68 17890 goto __pyx_L1_error;
jpayne@68 17891 __pyx_L26_try_end:;
jpayne@68 17892 }
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jpayne@68 17913 /* "pysam/libchtslib.pyx":667
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jpayne@68 17923 __pyx_t_4 = 0;
jpayne@68 17924
jpayne@68 17925 /* "pysam/libchtslib.pyx":668
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jpayne@68 17928 * if ":" in region: # <<<<<<<<<<<<<<
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jpayne@68 17934
jpayne@68 17935 /* "pysam/libchtslib.pyx":669
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jpayne@68 17943 __Pyx_GOTREF(__pyx_t_2);
jpayne@68 17944 __pyx_t_10 = NULL;
jpayne@68 17945 __pyx_t_13 = 0;
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jpayne@68 17947 if (likely(PyMethod_Check(__pyx_t_2))) {
jpayne@68 17948 __pyx_t_10 = PyMethod_GET_SELF(__pyx_t_2);
jpayne@68 17949 if (likely(__pyx_t_10)) {
jpayne@68 17950 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
jpayne@68 17951 __Pyx_INCREF(__pyx_t_10);
jpayne@68 17952 __Pyx_INCREF(function);
jpayne@68 17953 __Pyx_DECREF_SET(__pyx_t_2, function);
jpayne@68 17954 __pyx_t_13 = 1;
jpayne@68 17955 }
jpayne@68 17956 }
jpayne@68 17957 #endif
jpayne@68 17958 {
jpayne@68 17959 PyObject *__pyx_callargs[2] = {__pyx_t_10, __pyx_kp_u__55};
jpayne@68 17960 __pyx_t_4 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_13, 1+__pyx_t_13);
jpayne@68 17961 __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
jpayne@68 17962 if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 669, __pyx_L1_error)
jpayne@68 17963 __Pyx_GOTREF(__pyx_t_4);
jpayne@68 17964 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 17965 }
jpayne@68 17966 if ((likely(PyTuple_CheckExact(__pyx_t_4))) || (PyList_CheckExact(__pyx_t_4))) {
jpayne@68 17967 PyObject* sequence = __pyx_t_4;
jpayne@68 17968 Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
jpayne@68 17969 if (unlikely(size != 2)) {
jpayne@68 17970 if (size > 2) __Pyx_RaiseTooManyValuesError(2);
jpayne@68 17971 else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
jpayne@68 17972 __PYX_ERR(0, 669, __pyx_L1_error)
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jpayne@68 17975 if (likely(PyTuple_CheckExact(sequence))) {
jpayne@68 17976 __pyx_t_2 = PyTuple_GET_ITEM(sequence, 0);
jpayne@68 17977 __pyx_t_10 = PyTuple_GET_ITEM(sequence, 1);
jpayne@68 17978 } else {
jpayne@68 17979 __pyx_t_2 = PyList_GET_ITEM(sequence, 0);
jpayne@68 17980 __pyx_t_10 = PyList_GET_ITEM(sequence, 1);
jpayne@68 17981 }
jpayne@68 17982 __Pyx_INCREF(__pyx_t_2);
jpayne@68 17983 __Pyx_INCREF(__pyx_t_10);
jpayne@68 17984 #else
jpayne@68 17985 __pyx_t_2 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 669, __pyx_L1_error)
jpayne@68 17986 __Pyx_GOTREF(__pyx_t_2);
jpayne@68 17987 __pyx_t_10 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 669, __pyx_L1_error)
jpayne@68 17988 __Pyx_GOTREF(__pyx_t_10);
jpayne@68 17989 #endif
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jpayne@68 17993 __pyx_t_11 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 669, __pyx_L1_error)
jpayne@68 17994 __Pyx_GOTREF(__pyx_t_11);
jpayne@68 17995 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
jpayne@68 17996 __pyx_t_14 = __Pyx_PyObject_GetIterNextFunc(__pyx_t_11);
jpayne@68 17997 index = 0; __pyx_t_2 = __pyx_t_14(__pyx_t_11); if (unlikely(!__pyx_t_2)) goto __pyx_L31_unpacking_failed;
jpayne@68 17998 __Pyx_GOTREF(__pyx_t_2);
jpayne@68 17999 index = 1; __pyx_t_10 = __pyx_t_14(__pyx_t_11); if (unlikely(!__pyx_t_10)) goto __pyx_L31_unpacking_failed;
jpayne@68 18000 __Pyx_GOTREF(__pyx_t_10);
jpayne@68 18001 if (__Pyx_IternextUnpackEndCheck(__pyx_t_14(__pyx_t_11), 2) < 0) __PYX_ERR(0, 669, __pyx_L1_error)
jpayne@68 18002 __pyx_t_14 = NULL;
jpayne@68 18003 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
jpayne@68 18004 goto __pyx_L32_unpacking_done;
jpayne@68 18005 __pyx_L31_unpacking_failed:;
jpayne@68 18006 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
jpayne@68 18007 __pyx_t_14 = NULL;
jpayne@68 18008 if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
jpayne@68 18009 __PYX_ERR(0, 669, __pyx_L1_error)
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jpayne@68 18011 }
jpayne@68 18012 __Pyx_DECREF_SET(__pyx_v_contig, __pyx_t_2);
jpayne@68 18013 __pyx_t_2 = 0;
jpayne@68 18014 __pyx_v_coord = __pyx_t_10;
jpayne@68 18015 __pyx_t_10 = 0;
jpayne@68 18016
jpayne@68 18017 /* "pysam/libchtslib.pyx":670
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jpayne@68 18025 __Pyx_GOTREF(__pyx_t_10);
jpayne@68 18026 __pyx_t_2 = NULL;
jpayne@68 18027 __pyx_t_13 = 0;
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jpayne@68 18029 if (likely(PyMethod_Check(__pyx_t_10))) {
jpayne@68 18030 __pyx_t_2 = PyMethod_GET_SELF(__pyx_t_10);
jpayne@68 18031 if (likely(__pyx_t_2)) {
jpayne@68 18032 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_10);
jpayne@68 18033 __Pyx_INCREF(__pyx_t_2);
jpayne@68 18034 __Pyx_INCREF(function);
jpayne@68 18035 __Pyx_DECREF_SET(__pyx_t_10, function);
jpayne@68 18036 __pyx_t_13 = 1;
jpayne@68 18037 }
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jpayne@68 18043 __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 18044 if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 670, __pyx_L1_error)
jpayne@68 18045 __Pyx_GOTREF(__pyx_t_4);
jpayne@68 18046 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
jpayne@68 18047 }
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jpayne@68 18049 __pyx_t_4 = 0;
jpayne@68 18050
jpayne@68 18051 /* "pysam/libchtslib.pyx":671
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jpayne@68 18059 __Pyx_GOTREF(__pyx_t_4);
jpayne@68 18060 __pyx_t_10 = __Pyx_PyNumber_Int(__pyx_t_4); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 671, __pyx_L1_error)
jpayne@68 18061 __Pyx_GOTREF(__pyx_t_10);
jpayne@68 18062 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
jpayne@68 18063 __pyx_t_4 = __Pyx_PyInt_SubtractObjC(__pyx_t_10, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 671, __pyx_L1_error)
jpayne@68 18064 __Pyx_GOTREF(__pyx_t_4);
jpayne@68 18065 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
jpayne@68 18066 __pyx_t_8 = __Pyx_PyInt_As_int32_t(__pyx_t_4); if (unlikely((__pyx_t_8 == ((int32_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 671, __pyx_L1_error)
jpayne@68 18067 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
jpayne@68 18068 __pyx_v_rstart = __pyx_t_8;
jpayne@68 18069
jpayne@68 18070 /* "pysam/libchtslib.pyx":672
jpayne@68 18071 * parts = coord.split("-")
jpayne@68 18072 * rstart = int(parts[0]) - 1
jpayne@68 18073 * if len(parts) >= 1: # <<<<<<<<<<<<<<
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jpayne@68 18077 __pyx_t_15 = PyObject_Length(__pyx_v_parts); if (unlikely(__pyx_t_15 == ((Py_ssize_t)-1))) __PYX_ERR(0, 672, __pyx_L1_error)
jpayne@68 18078 __pyx_t_1 = (__pyx_t_15 >= 1);
jpayne@68 18079 if (__pyx_t_1) {
jpayne@68 18080
jpayne@68 18081 /* "pysam/libchtslib.pyx":673
jpayne@68 18082 * rstart = int(parts[0]) - 1
jpayne@68 18083 * if len(parts) >= 1:
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jpayne@68 18088 __pyx_t_4 = __Pyx_GetItemInt(__pyx_v_parts, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 673, __pyx_L1_error)
jpayne@68 18089 __Pyx_GOTREF(__pyx_t_4);
jpayne@68 18090 __pyx_t_10 = __Pyx_PyNumber_Int(__pyx_t_4); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 673, __pyx_L1_error)
jpayne@68 18091 __Pyx_GOTREF(__pyx_t_10);
jpayne@68 18092 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
jpayne@68 18093 __pyx_t_8 = __Pyx_PyInt_As_int32_t(__pyx_t_10); if (unlikely((__pyx_t_8 == ((int32_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 673, __pyx_L1_error)
jpayne@68 18094 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
jpayne@68 18095 __pyx_v_rstop = __pyx_t_8;
jpayne@68 18096
jpayne@68 18097 /* "pysam/libchtslib.pyx":672
jpayne@68 18098 * parts = coord.split("-")
jpayne@68 18099 * rstart = int(parts[0]) - 1
jpayne@68 18100 * if len(parts) >= 1: # <<<<<<<<<<<<<<
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jpayne@68 18105
jpayne@68 18106 /* "pysam/libchtslib.pyx":668
jpayne@68 18107 * if region:
jpayne@68 18108 * region = force_str(region)
jpayne@68 18109 * if ":" in region: # <<<<<<<<<<<<<<
jpayne@68 18110 * contig, coord = region.split(":")
jpayne@68 18111 * parts = coord.split("-")
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jpayne@68 18114 }
jpayne@68 18115
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jpayne@68 18126 }
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jpayne@68 18128
jpayne@68 18129 /* "pysam/libchtslib.pyx":666
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jpayne@68 18134 * if ":" in region:
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jpayne@68 18136 }
jpayne@68 18137
jpayne@68 18138 /* "pysam/libchtslib.pyx":677
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jpayne@68 18140 *
jpayne@68 18141 * if tid is not None: # <<<<<<<<<<<<<<
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jpayne@68 18144 */
jpayne@68 18145 __pyx_t_1 = (__pyx_v_tid != Py_None);
jpayne@68 18146 if (__pyx_t_1) {
jpayne@68 18147
jpayne@68 18148 /* "pysam/libchtslib.pyx":678
jpayne@68 18149 *
jpayne@68 18150 * if tid is not None:
jpayne@68 18151 * if not self.is_valid_tid(tid): # <<<<<<<<<<<<<<
jpayne@68 18152 * raise IndexError('invalid tid')
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jpayne@68 18155 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_is_valid_tid); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 678, __pyx_L1_error)
jpayne@68 18156 __Pyx_GOTREF(__pyx_t_4);
jpayne@68 18157 __pyx_t_2 = NULL;
jpayne@68 18158 __pyx_t_13 = 0;
jpayne@68 18159 #if CYTHON_UNPACK_METHODS
jpayne@68 18160 if (likely(PyMethod_Check(__pyx_t_4))) {
jpayne@68 18161 __pyx_t_2 = PyMethod_GET_SELF(__pyx_t_4);
jpayne@68 18162 if (likely(__pyx_t_2)) {
jpayne@68 18163 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
jpayne@68 18164 __Pyx_INCREF(__pyx_t_2);
jpayne@68 18165 __Pyx_INCREF(function);
jpayne@68 18166 __Pyx_DECREF_SET(__pyx_t_4, function);
jpayne@68 18167 __pyx_t_13 = 1;
jpayne@68 18168 }
jpayne@68 18169 }
jpayne@68 18170 #endif
jpayne@68 18171 {
jpayne@68 18172 PyObject *__pyx_callargs[2] = {__pyx_t_2, __pyx_v_tid};
jpayne@68 18173 __pyx_t_10 = __Pyx_PyObject_FastCall(__pyx_t_4, __pyx_callargs+1-__pyx_t_13, 1+__pyx_t_13);
jpayne@68 18174 __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 18175 if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 678, __pyx_L1_error)
jpayne@68 18176 __Pyx_GOTREF(__pyx_t_10);
jpayne@68 18177 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
jpayne@68 18178 }
jpayne@68 18179 __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_10); if (unlikely((__pyx_t_1 < 0))) __PYX_ERR(0, 678, __pyx_L1_error)
jpayne@68 18180 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
jpayne@68 18181 __pyx_t_3 = (!__pyx_t_1);
jpayne@68 18182 if (unlikely(__pyx_t_3)) {
jpayne@68 18183
jpayne@68 18184 /* "pysam/libchtslib.pyx":679
jpayne@68 18185 * if tid is not None:
jpayne@68 18186 * if not self.is_valid_tid(tid):
jpayne@68 18187 * raise IndexError('invalid tid') # <<<<<<<<<<<<<<
jpayne@68 18188 * rtid = tid
jpayne@68 18189 * else:
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jpayne@68 18191 __pyx_t_10 = __Pyx_PyObject_Call(__pyx_builtin_IndexError, __pyx_tuple__57, NULL); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 679, __pyx_L1_error)
jpayne@68 18192 __Pyx_GOTREF(__pyx_t_10);
jpayne@68 18193 __Pyx_Raise(__pyx_t_10, 0, 0, 0);
jpayne@68 18194 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
jpayne@68 18195 __PYX_ERR(0, 679, __pyx_L1_error)
jpayne@68 18196
jpayne@68 18197 /* "pysam/libchtslib.pyx":678
jpayne@68 18198 *
jpayne@68 18199 * if tid is not None:
jpayne@68 18200 * if not self.is_valid_tid(tid): # <<<<<<<<<<<<<<
jpayne@68 18201 * raise IndexError('invalid tid')
jpayne@68 18202 * rtid = tid
jpayne@68 18203 */
jpayne@68 18204 }
jpayne@68 18205
jpayne@68 18206 /* "pysam/libchtslib.pyx":680
jpayne@68 18207 * if not self.is_valid_tid(tid):
jpayne@68 18208 * raise IndexError('invalid tid')
jpayne@68 18209 * rtid = tid # <<<<<<<<<<<<<<
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jpayne@68 18213 __pyx_t_9 = __Pyx_PyInt_As_int(__pyx_v_tid); if (unlikely((__pyx_t_9 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 680, __pyx_L1_error)
jpayne@68 18214 __pyx_v_rtid = __pyx_t_9;
jpayne@68 18215
jpayne@68 18216 /* "pysam/libchtslib.pyx":677
jpayne@68 18217 * contig = region
jpayne@68 18218 *
jpayne@68 18219 * if tid is not None: # <<<<<<<<<<<<<<
jpayne@68 18220 * if not self.is_valid_tid(tid):
jpayne@68 18221 * raise IndexError('invalid tid')
jpayne@68 18222 */
jpayne@68 18223 goto __pyx_L34;
jpayne@68 18224 }
jpayne@68 18225
jpayne@68 18226 /* "pysam/libchtslib.pyx":682
jpayne@68 18227 * rtid = tid
jpayne@68 18228 * else:
jpayne@68 18229 * if contig == "*": # <<<<<<<<<<<<<<
jpayne@68 18230 * rtid = HTS_IDX_NOCOOR
jpayne@68 18231 * elif contig == ".":
jpayne@68 18232 */
jpayne@68 18233 /*else*/ {
jpayne@68 18234 __pyx_t_3 = (__Pyx_PyUnicode_Equals(__pyx_v_contig, __pyx_kp_u__58, Py_EQ)); if (unlikely((__pyx_t_3 < 0))) __PYX_ERR(0, 682, __pyx_L1_error)
jpayne@68 18235 if (__pyx_t_3) {
jpayne@68 18236
jpayne@68 18237 /* "pysam/libchtslib.pyx":683
jpayne@68 18238 * else:
jpayne@68 18239 * if contig == "*":
jpayne@68 18240 * rtid = HTS_IDX_NOCOOR # <<<<<<<<<<<<<<
jpayne@68 18241 * elif contig == ".":
jpayne@68 18242 * rtid = HTS_IDX_START
jpayne@68 18243 */
jpayne@68 18244 __pyx_v_rtid = HTS_IDX_NOCOOR;
jpayne@68 18245
jpayne@68 18246 /* "pysam/libchtslib.pyx":682
jpayne@68 18247 * rtid = tid
jpayne@68 18248 * else:
jpayne@68 18249 * if contig == "*": # <<<<<<<<<<<<<<
jpayne@68 18250 * rtid = HTS_IDX_NOCOOR
jpayne@68 18251 * elif contig == ".":
jpayne@68 18252 */
jpayne@68 18253 goto __pyx_L36;
jpayne@68 18254 }
jpayne@68 18255
jpayne@68 18256 /* "pysam/libchtslib.pyx":684
jpayne@68 18257 * if contig == "*":
jpayne@68 18258 * rtid = HTS_IDX_NOCOOR
jpayne@68 18259 * elif contig == ".": # <<<<<<<<<<<<<<
jpayne@68 18260 * rtid = HTS_IDX_START
jpayne@68 18261 * else:
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jpayne@68 18263 __pyx_t_3 = (__Pyx_PyUnicode_Equals(__pyx_v_contig, __pyx_kp_u__59, Py_EQ)); if (unlikely((__pyx_t_3 < 0))) __PYX_ERR(0, 684, __pyx_L1_error)
jpayne@68 18264 if (__pyx_t_3) {
jpayne@68 18265
jpayne@68 18266 /* "pysam/libchtslib.pyx":685
jpayne@68 18267 * rtid = HTS_IDX_NOCOOR
jpayne@68 18268 * elif contig == ".":
jpayne@68 18269 * rtid = HTS_IDX_START # <<<<<<<<<<<<<<
jpayne@68 18270 * else:
jpayne@68 18271 * rtid = self.get_tid(contig)
jpayne@68 18272 */
jpayne@68 18273 __pyx_v_rtid = HTS_IDX_START;
jpayne@68 18274
jpayne@68 18275 /* "pysam/libchtslib.pyx":684
jpayne@68 18276 * if contig == "*":
jpayne@68 18277 * rtid = HTS_IDX_NOCOOR
jpayne@68 18278 * elif contig == ".": # <<<<<<<<<<<<<<
jpayne@68 18279 * rtid = HTS_IDX_START
jpayne@68 18280 * else:
jpayne@68 18281 */
jpayne@68 18282 goto __pyx_L36;
jpayne@68 18283 }
jpayne@68 18284
jpayne@68 18285 /* "pysam/libchtslib.pyx":687
jpayne@68 18286 * rtid = HTS_IDX_START
jpayne@68 18287 * else:
jpayne@68 18288 * rtid = self.get_tid(contig) # <<<<<<<<<<<<<<
jpayne@68 18289 * if rtid < 0:
jpayne@68 18290 * raise ValueError('invalid contig `%s`' % contig)
jpayne@68 18291 */
jpayne@68 18292 /*else*/ {
jpayne@68 18293 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_get_tid); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 687, __pyx_L1_error)
jpayne@68 18294 __Pyx_GOTREF(__pyx_t_4);
jpayne@68 18295 __pyx_t_2 = NULL;
jpayne@68 18296 __pyx_t_13 = 0;
jpayne@68 18297 #if CYTHON_UNPACK_METHODS
jpayne@68 18298 if (likely(PyMethod_Check(__pyx_t_4))) {
jpayne@68 18299 __pyx_t_2 = PyMethod_GET_SELF(__pyx_t_4);
jpayne@68 18300 if (likely(__pyx_t_2)) {
jpayne@68 18301 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
jpayne@68 18302 __Pyx_INCREF(__pyx_t_2);
jpayne@68 18303 __Pyx_INCREF(function);
jpayne@68 18304 __Pyx_DECREF_SET(__pyx_t_4, function);
jpayne@68 18305 __pyx_t_13 = 1;
jpayne@68 18306 }
jpayne@68 18307 }
jpayne@68 18308 #endif
jpayne@68 18309 {
jpayne@68 18310 PyObject *__pyx_callargs[2] = {__pyx_t_2, __pyx_v_contig};
jpayne@68 18311 __pyx_t_10 = __Pyx_PyObject_FastCall(__pyx_t_4, __pyx_callargs+1-__pyx_t_13, 1+__pyx_t_13);
jpayne@68 18312 __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 18313 if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 687, __pyx_L1_error)
jpayne@68 18314 __Pyx_GOTREF(__pyx_t_10);
jpayne@68 18315 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
jpayne@68 18316 }
jpayne@68 18317 __pyx_t_9 = __Pyx_PyInt_As_int(__pyx_t_10); if (unlikely((__pyx_t_9 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 687, __pyx_L1_error)
jpayne@68 18318 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
jpayne@68 18319 __pyx_v_rtid = __pyx_t_9;
jpayne@68 18320
jpayne@68 18321 /* "pysam/libchtslib.pyx":688
jpayne@68 18322 * else:
jpayne@68 18323 * rtid = self.get_tid(contig)
jpayne@68 18324 * if rtid < 0: # <<<<<<<<<<<<<<
jpayne@68 18325 * raise ValueError('invalid contig `%s`' % contig)
jpayne@68 18326 *
jpayne@68 18327 */
jpayne@68 18328 __pyx_t_3 = (__pyx_v_rtid < 0);
jpayne@68 18329 if (unlikely(__pyx_t_3)) {
jpayne@68 18330
jpayne@68 18331 /* "pysam/libchtslib.pyx":689
jpayne@68 18332 * rtid = self.get_tid(contig)
jpayne@68 18333 * if rtid < 0:
jpayne@68 18334 * raise ValueError('invalid contig `%s`' % contig) # <<<<<<<<<<<<<<
jpayne@68 18335 *
jpayne@68 18336 * if rstart > rstop:
jpayne@68 18337 */
jpayne@68 18338 __pyx_t_10 = __Pyx_PyUnicode_FormatSafe(__pyx_kp_u_invalid_contig_s, __pyx_v_contig); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 689, __pyx_L1_error)
jpayne@68 18339 __Pyx_GOTREF(__pyx_t_10);
jpayne@68 18340 __pyx_t_4 = __Pyx_PyObject_CallOneArg(__pyx_builtin_ValueError, __pyx_t_10); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 689, __pyx_L1_error)
jpayne@68 18341 __Pyx_GOTREF(__pyx_t_4);
jpayne@68 18342 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
jpayne@68 18343 __Pyx_Raise(__pyx_t_4, 0, 0, 0);
jpayne@68 18344 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
jpayne@68 18345 __PYX_ERR(0, 689, __pyx_L1_error)
jpayne@68 18346
jpayne@68 18347 /* "pysam/libchtslib.pyx":688
jpayne@68 18348 * else:
jpayne@68 18349 * rtid = self.get_tid(contig)
jpayne@68 18350 * if rtid < 0: # <<<<<<<<<<<<<<
jpayne@68 18351 * raise ValueError('invalid contig `%s`' % contig)
jpayne@68 18352 *
jpayne@68 18353 */
jpayne@68 18354 }
jpayne@68 18355 }
jpayne@68 18356 __pyx_L36:;
jpayne@68 18357 }
jpayne@68 18358 __pyx_L34:;
jpayne@68 18359
jpayne@68 18360 /* "pysam/libchtslib.pyx":691
jpayne@68 18361 * raise ValueError('invalid contig `%s`' % contig)
jpayne@68 18362 *
jpayne@68 18363 * if rstart > rstop: # <<<<<<<<<<<<<<
jpayne@68 18364 * raise ValueError('invalid coordinates: start (%i) > stop (%i)' % (rstart, rstop))
jpayne@68 18365 * if not 0 <= rstart < MAX_POS:
jpayne@68 18366 */
jpayne@68 18367 __pyx_t_3 = (__pyx_v_rstart > __pyx_v_rstop);
jpayne@68 18368 if (unlikely(__pyx_t_3)) {
jpayne@68 18369
jpayne@68 18370 /* "pysam/libchtslib.pyx":692
jpayne@68 18371 *
jpayne@68 18372 * if rstart > rstop:
jpayne@68 18373 * raise ValueError('invalid coordinates: start (%i) > stop (%i)' % (rstart, rstop)) # <<<<<<<<<<<<<<
jpayne@68 18374 * if not 0 <= rstart < MAX_POS:
jpayne@68 18375 * raise ValueError('start out of range (%i)' % rstart)
jpayne@68 18376 */
jpayne@68 18377 __pyx_t_4 = __Pyx_PyInt_From_int32_t(__pyx_v_rstart); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 692, __pyx_L1_error)
jpayne@68 18378 __Pyx_GOTREF(__pyx_t_4);
jpayne@68 18379 __pyx_t_10 = __Pyx_PyInt_From_int32_t(__pyx_v_rstop); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 692, __pyx_L1_error)
jpayne@68 18380 __Pyx_GOTREF(__pyx_t_10);
jpayne@68 18381 __pyx_t_2 = PyTuple_New(2); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 692, __pyx_L1_error)
jpayne@68 18382 __Pyx_GOTREF(__pyx_t_2);
jpayne@68 18383 __Pyx_GIVEREF(__pyx_t_4);
jpayne@68 18384 if (__Pyx_PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_4)) __PYX_ERR(0, 692, __pyx_L1_error);
jpayne@68 18385 __Pyx_GIVEREF(__pyx_t_10);
jpayne@68 18386 if (__Pyx_PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_10)) __PYX_ERR(0, 692, __pyx_L1_error);
jpayne@68 18387 __pyx_t_4 = 0;
jpayne@68 18388 __pyx_t_10 = 0;
jpayne@68 18389 __pyx_t_10 = PyUnicode_Format(__pyx_kp_u_invalid_coordinates_start_i_stop, __pyx_t_2); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 692, __pyx_L1_error)
jpayne@68 18390 __Pyx_GOTREF(__pyx_t_10);
jpayne@68 18391 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 18392 __pyx_t_2 = __Pyx_PyObject_CallOneArg(__pyx_builtin_ValueError, __pyx_t_10); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 692, __pyx_L1_error)
jpayne@68 18393 __Pyx_GOTREF(__pyx_t_2);
jpayne@68 18394 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
jpayne@68 18395 __Pyx_Raise(__pyx_t_2, 0, 0, 0);
jpayne@68 18396 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 18397 __PYX_ERR(0, 692, __pyx_L1_error)
jpayne@68 18398
jpayne@68 18399 /* "pysam/libchtslib.pyx":691
jpayne@68 18400 * raise ValueError('invalid contig `%s`' % contig)
jpayne@68 18401 *
jpayne@68 18402 * if rstart > rstop: # <<<<<<<<<<<<<<
jpayne@68 18403 * raise ValueError('invalid coordinates: start (%i) > stop (%i)' % (rstart, rstop))
jpayne@68 18404 * if not 0 <= rstart < MAX_POS:
jpayne@68 18405 */
jpayne@68 18406 }
jpayne@68 18407
jpayne@68 18408 /* "pysam/libchtslib.pyx":693
jpayne@68 18409 * if rstart > rstop:
jpayne@68 18410 * raise ValueError('invalid coordinates: start (%i) > stop (%i)' % (rstart, rstop))
jpayne@68 18411 * if not 0 <= rstart < MAX_POS: # <<<<<<<<<<<<<<
jpayne@68 18412 * raise ValueError('start out of range (%i)' % rstart)
jpayne@68 18413 * if not 0 <= rstop <= MAX_POS:
jpayne@68 18414 */
jpayne@68 18415 __pyx_t_3 = (0 <= __pyx_v_rstart);
jpayne@68 18416 if (__pyx_t_3) {
jpayne@68 18417 __pyx_t_3 = (__pyx_v_rstart < __pyx_v_5pysam_10libchtslib_MAX_POS);
jpayne@68 18418 }
jpayne@68 18419 __pyx_t_1 = (!__pyx_t_3);
jpayne@68 18420 if (unlikely(__pyx_t_1)) {
jpayne@68 18421
jpayne@68 18422 /* "pysam/libchtslib.pyx":694
jpayne@68 18423 * raise ValueError('invalid coordinates: start (%i) > stop (%i)' % (rstart, rstop))
jpayne@68 18424 * if not 0 <= rstart < MAX_POS:
jpayne@68 18425 * raise ValueError('start out of range (%i)' % rstart) # <<<<<<<<<<<<<<
jpayne@68 18426 * if not 0 <= rstop <= MAX_POS:
jpayne@68 18427 * raise ValueError('stop out of range (%i)' % rstop)
jpayne@68 18428 */
jpayne@68 18429 __pyx_t_2 = __Pyx_PyInt_From_int32_t(__pyx_v_rstart); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 694, __pyx_L1_error)
jpayne@68 18430 __Pyx_GOTREF(__pyx_t_2);
jpayne@68 18431 __pyx_t_10 = PyUnicode_Format(__pyx_kp_u_start_out_of_range_i, __pyx_t_2); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 694, __pyx_L1_error)
jpayne@68 18432 __Pyx_GOTREF(__pyx_t_10);
jpayne@68 18433 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 18434 __pyx_t_2 = __Pyx_PyObject_CallOneArg(__pyx_builtin_ValueError, __pyx_t_10); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 694, __pyx_L1_error)
jpayne@68 18435 __Pyx_GOTREF(__pyx_t_2);
jpayne@68 18436 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
jpayne@68 18437 __Pyx_Raise(__pyx_t_2, 0, 0, 0);
jpayne@68 18438 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
jpayne@68 18439 __PYX_ERR(0, 694, __pyx_L1_error)
jpayne@68 18440
jpayne@68 18441 /* "pysam/libchtslib.pyx":693
jpayne@68 18442 * if rstart > rstop:
jpayne@68 18443 * raise ValueError('invalid coordinates: start (%i) > stop (%i)' % (rstart, rstop))
jpayne@68 18444 * if not 0 <= rstart < MAX_POS: # <<<<<<<<<<<<<<
jpayne@68 18445 * raise ValueError('start out of range (%i)' % rstart)
jpayne@68 18446 * if not 0 <= rstop <= MAX_POS:
jpayne@68 18447 */
jpayne@68 18448 }
jpayne@68 18449
jpayne@68 18450 /* "pysam/libchtslib.pyx":695
jpayne@68 18451 * if not 0 <= rstart < MAX_POS:
jpayne@68 18452 * raise ValueError('start out of range (%i)' % rstart)
jpayne@68 18453 * if not 0 <= rstop <= MAX_POS: # <<<<<<<<<<<<<<
jpayne@68 18454 * raise ValueError('stop out of range (%i)' % rstop)
jpayne@68 18455 *
jpayne@68 18456 */
jpayne@68 18457 __pyx_t_1 = (0 <= __pyx_v_rstop);
jpayne@68 18458 if (__pyx_t_1) {
jpayne@68 18459 __pyx_t_1 = (__pyx_v_rstop <= __pyx_v_5pysam_10libchtslib_MAX_POS);
jpayne@68 18460 }
jpayne@68 18461 __pyx_t_3 = (!__pyx_t_1);
jpayne@68 18462 if (unlikely(__pyx_t_3)) {
jpayne@68 18463
jpayne@68 18464 /* "pysam/libchtslib.pyx":696
jpayne@68 18465 * raise ValueError('start out of range (%i)' % rstart)
jpayne@68 18466 * if not 0 <= rstop <= MAX_POS:
jpayne@68 18467 * raise ValueError('stop out of range (%i)' % rstop) # <<<<<<<<<<<<<<
jpayne@68 18468 *
jpayne@68 18469 * return 1, rtid, rstart, rstop
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jpayne@68 19778
jpayne@68 19779 static void __pyx_tp_dealloc_5pysam_10libchtslib_HTSFile(PyObject *o) {
jpayne@68 19780 struct __pyx_obj_5pysam_10libchtslib_HTSFile *p = (struct __pyx_obj_5pysam_10libchtslib_HTSFile *)o;
jpayne@68 19781 #if CYTHON_USE_TP_FINALIZE
jpayne@68 19782 if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) {
jpayne@68 19783 if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_10libchtslib_HTSFile) {
jpayne@68 19784 if (PyObject_CallFinalizerFromDealloc(o)) return;
jpayne@68 19785 }
jpayne@68 19786 }
jpayne@68 19787 #endif
jpayne@68 19788 PyObject_GC_UnTrack(o);
jpayne@68 19789 {
jpayne@68 19790 PyObject *etype, *eval, *etb;
jpayne@68 19791 PyErr_Fetch(&etype, &eval, &etb);
jpayne@68 19792 __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1);
jpayne@68 19793 __pyx_pw_5pysam_10libchtslib_7HTSFile_5__dealloc__(o);
jpayne@68 19794 __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1);
jpayne@68 19795 PyErr_Restore(etype, eval, etb);
jpayne@68 19796 }
jpayne@68 19797 Py_CLEAR(p->filename);
jpayne@68 19798 Py_CLEAR(p->mode);
jpayne@68 19799 Py_CLEAR(p->threads);
jpayne@68 19800 Py_CLEAR(p->index_filename);
jpayne@68 19801 #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY
jpayne@68 19802 (*Py_TYPE(o)->tp_free)(o);
jpayne@68 19803 #else
jpayne@68 19804 {
jpayne@68 19805 freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free);
jpayne@68 19806 if (tp_free) tp_free(o);
jpayne@68 19807 }
jpayne@68 19808 #endif
jpayne@68 19809 }
jpayne@68 19810
jpayne@68 19811 static int __pyx_tp_traverse_5pysam_10libchtslib_HTSFile(PyObject *o, visitproc v, void *a) {
jpayne@68 19812 int e;
jpayne@68 19813 struct __pyx_obj_5pysam_10libchtslib_HTSFile *p = (struct __pyx_obj_5pysam_10libchtslib_HTSFile *)o;
jpayne@68 19814 if (p->filename) {
jpayne@68 19815 e = (*v)(p->filename, a); if (e) return e;
jpayne@68 19816 }
jpayne@68 19817 if (p->mode) {
jpayne@68 19818 e = (*v)(p->mode, a); if (e) return e;
jpayne@68 19819 }
jpayne@68 19820 if (p->threads) {
jpayne@68 19821 e = (*v)(p->threads, a); if (e) return e;
jpayne@68 19822 }
jpayne@68 19823 if (p->index_filename) {
jpayne@68 19824 e = (*v)(p->index_filename, a); if (e) return e;
jpayne@68 19825 }
jpayne@68 19826 return 0;
jpayne@68 19827 }
jpayne@68 19828
jpayne@68 19829 static int __pyx_tp_clear_5pysam_10libchtslib_HTSFile(PyObject *o) {
jpayne@68 19830 PyObject* tmp;
jpayne@68 19831 struct __pyx_obj_5pysam_10libchtslib_HTSFile *p = (struct __pyx_obj_5pysam_10libchtslib_HTSFile *)o;
jpayne@68 19832 tmp = ((PyObject*)p->filename);
jpayne@68 19833 p->filename = Py_None; Py_INCREF(Py_None);
jpayne@68 19834 Py_XDECREF(tmp);
jpayne@68 19835 tmp = ((PyObject*)p->mode);
jpayne@68 19836 p->mode = Py_None; Py_INCREF(Py_None);
jpayne@68 19837 Py_XDECREF(tmp);
jpayne@68 19838 tmp = ((PyObject*)p->threads);
jpayne@68 19839 p->threads = Py_None; Py_INCREF(Py_None);
jpayne@68 19840 Py_XDECREF(tmp);
jpayne@68 19841 tmp = ((PyObject*)p->index_filename);
jpayne@68 19842 p->index_filename = Py_None; Py_INCREF(Py_None);
jpayne@68 19843 Py_XDECREF(tmp);
jpayne@68 19844 return 0;
jpayne@68 19845 }
jpayne@68 19846
jpayne@68 19847 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_category(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19848 return __pyx_pw_5pysam_10libchtslib_7HTSFile_8category_1__get__(o);
jpayne@68 19849 }
jpayne@68 19850
jpayne@68 19851 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_format(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19852 return __pyx_pw_5pysam_10libchtslib_7HTSFile_6format_1__get__(o);
jpayne@68 19853 }
jpayne@68 19854
jpayne@68 19855 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_version(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19856 return __pyx_pw_5pysam_10libchtslib_7HTSFile_7version_1__get__(o);
jpayne@68 19857 }
jpayne@68 19858
jpayne@68 19859 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_compression(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19860 return __pyx_pw_5pysam_10libchtslib_7HTSFile_11compression_1__get__(o);
jpayne@68 19861 }
jpayne@68 19862
jpayne@68 19863 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_description(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19864 return __pyx_pw_5pysam_10libchtslib_7HTSFile_11description_1__get__(o);
jpayne@68 19865 }
jpayne@68 19866
jpayne@68 19867 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_open(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19868 return __pyx_pw_5pysam_10libchtslib_7HTSFile_7is_open_1__get__(o);
jpayne@68 19869 }
jpayne@68 19870
jpayne@68 19871 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_closed(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19872 return __pyx_pw_5pysam_10libchtslib_7HTSFile_9is_closed_1__get__(o);
jpayne@68 19873 }
jpayne@68 19874
jpayne@68 19875 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_closed(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19876 return __pyx_pw_5pysam_10libchtslib_7HTSFile_6closed_1__get__(o);
jpayne@68 19877 }
jpayne@68 19878
jpayne@68 19879 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_write(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19880 return __pyx_pw_5pysam_10libchtslib_7HTSFile_8is_write_1__get__(o);
jpayne@68 19881 }
jpayne@68 19882
jpayne@68 19883 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_read(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19884 return __pyx_pw_5pysam_10libchtslib_7HTSFile_7is_read_1__get__(o);
jpayne@68 19885 }
jpayne@68 19886
jpayne@68 19887 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_sam(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19888 return __pyx_pw_5pysam_10libchtslib_7HTSFile_6is_sam_1__get__(o);
jpayne@68 19889 }
jpayne@68 19890
jpayne@68 19891 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_bam(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19892 return __pyx_pw_5pysam_10libchtslib_7HTSFile_6is_bam_1__get__(o);
jpayne@68 19893 }
jpayne@68 19894
jpayne@68 19895 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_cram(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19896 return __pyx_pw_5pysam_10libchtslib_7HTSFile_7is_cram_1__get__(o);
jpayne@68 19897 }
jpayne@68 19898
jpayne@68 19899 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_vcf(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19900 return __pyx_pw_5pysam_10libchtslib_7HTSFile_6is_vcf_1__get__(o);
jpayne@68 19901 }
jpayne@68 19902
jpayne@68 19903 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_bcf(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19904 return __pyx_pw_5pysam_10libchtslib_7HTSFile_6is_bcf_1__get__(o);
jpayne@68 19905 }
jpayne@68 19906
jpayne@68 19907 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_filename(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19908 return __pyx_pw_5pysam_10libchtslib_7HTSFile_8filename_1__get__(o);
jpayne@68 19909 }
jpayne@68 19910
jpayne@68 19911 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_mode(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19912 return __pyx_pw_5pysam_10libchtslib_7HTSFile_4mode_1__get__(o);
jpayne@68 19913 }
jpayne@68 19914
jpayne@68 19915 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_threads(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19916 return __pyx_pw_5pysam_10libchtslib_7HTSFile_7threads_1__get__(o);
jpayne@68 19917 }
jpayne@68 19918
jpayne@68 19919 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_index_filename(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19920 return __pyx_pw_5pysam_10libchtslib_7HTSFile_14index_filename_1__get__(o);
jpayne@68 19921 }
jpayne@68 19922
jpayne@68 19923 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_stream(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19924 return __pyx_pw_5pysam_10libchtslib_7HTSFile_9is_stream_1__get__(o);
jpayne@68 19925 }
jpayne@68 19926
jpayne@68 19927 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_is_remote(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19928 return __pyx_pw_5pysam_10libchtslib_7HTSFile_9is_remote_1__get__(o);
jpayne@68 19929 }
jpayne@68 19930
jpayne@68 19931 static PyObject *__pyx_getprop_5pysam_10libchtslib_7HTSFile_duplicate_filehandle(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 19932 return __pyx_pw_5pysam_10libchtslib_7HTSFile_20duplicate_filehandle_1__get__(o);
jpayne@68 19933 }
jpayne@68 19934
jpayne@68 19935 static PyMethodDef __pyx_methods_5pysam_10libchtslib_HTSFile[] = {
jpayne@68 19936 {"close", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_3close, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_2close},
jpayne@68 19937 {"flush", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_7flush, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_6flush},
jpayne@68 19938 {"check_truncation", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_9check_truncation, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_8check_truncation},
jpayne@68 19939 {"__enter__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_11__enter__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_10__enter__},
jpayne@68 19940 {"__exit__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_13__exit__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_12__exit__},
jpayne@68 19941 {"reset", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_15reset, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_14reset},
jpayne@68 19942 {"seek", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_17seek, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_16seek},
jpayne@68 19943 {"tell", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_19tell, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_18tell},
jpayne@68 19944 {"add_hts_options", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_21add_hts_options, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_20add_hts_options},
jpayne@68 19945 {"parse_region", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_23parse_region, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_22parse_region},
jpayne@68 19946 {"is_valid_tid", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_25is_valid_tid, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_24is_valid_tid},
jpayne@68 19947 {"is_valid_reference_name", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_27is_valid_reference_name, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_26is_valid_reference_name},
jpayne@68 19948 {"get_tid", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_29get_tid, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_28get_tid},
jpayne@68 19949 {"get_reference_name", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_31get_reference_name, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_30get_reference_name},
jpayne@68 19950 {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_33__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_32__reduce_cython__},
jpayne@68 19951 {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_7HTSFile_35__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_7HTSFile_34__setstate_cython__},
jpayne@68 19952 {0, 0, 0, 0}
jpayne@68 19953 };
jpayne@68 19954
jpayne@68 19955 static struct PyGetSetDef __pyx_getsets_5pysam_10libchtslib_HTSFile[] = {
jpayne@68 19956 {(char *)"category", __pyx_getprop_5pysam_10libchtslib_7HTSFile_category, 0, (char *)PyDoc_STR("General file format category. One of UNKNOWN, ALIGNMENTS,\n VARIANTS, INDEX, REGIONS"), 0},
jpayne@68 19957 {(char *)"format", __pyx_getprop_5pysam_10libchtslib_7HTSFile_format, 0, (char *)PyDoc_STR("File format.\n\n One of UNKNOWN, BINARY_FORMAT, TEXT_FORMAT, SAM, BAM,\n BAI, CRAM, CRAI, VCF, BCF, CSI, GZI, TBI, BED.\n "), 0},
jpayne@68 19958 {(char *)"version", __pyx_getprop_5pysam_10libchtslib_7HTSFile_version, 0, (char *)PyDoc_STR("Tuple of file format version numbers (major, minor)"), 0},
jpayne@68 19959 {(char *)"compression", __pyx_getprop_5pysam_10libchtslib_7HTSFile_compression, 0, (char *)PyDoc_STR("File compression.\n\n One of NONE, GZIP, BGZF, CUSTOM."), 0},
jpayne@68 19960 {(char *)"description", __pyx_getprop_5pysam_10libchtslib_7HTSFile_description, 0, (char *)PyDoc_STR("Vaguely human readable description of the file format"), 0},
jpayne@68 19961 {(char *)"is_open", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_open, 0, (char *)PyDoc_STR("return True if HTSFile is open and in a valid state."), 0},
jpayne@68 19962 {(char *)"is_closed", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_closed, 0, (char *)PyDoc_STR("return True if HTSFile is closed."), 0},
jpayne@68 19963 {(char *)"closed", __pyx_getprop_5pysam_10libchtslib_7HTSFile_closed, 0, (char *)PyDoc_STR("return True if HTSFile is closed."), 0},
jpayne@68 19964 {(char *)"is_write", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_write, 0, (char *)PyDoc_STR("return True if HTSFile is open for writing"), 0},
jpayne@68 19965 {(char *)"is_read", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_read, 0, (char *)PyDoc_STR("return True if HTSFile is open for reading"), 0},
jpayne@68 19966 {(char *)"is_sam", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_sam, 0, (char *)PyDoc_STR("return True if HTSFile is reading or writing a SAM alignment file"), 0},
jpayne@68 19967 {(char *)"is_bam", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_bam, 0, (char *)PyDoc_STR("return True if HTSFile is reading or writing a BAM alignment file"), 0},
jpayne@68 19968 {(char *)"is_cram", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_cram, 0, (char *)PyDoc_STR("return True if HTSFile is reading or writing a BAM alignment file"), 0},
jpayne@68 19969 {(char *)"is_vcf", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_vcf, 0, (char *)PyDoc_STR("return True if HTSFile is reading or writing a VCF variant file"), 0},
jpayne@68 19970 {(char *)"is_bcf", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_bcf, 0, (char *)PyDoc_STR("return True if HTSFile is reading or writing a BCF variant file"), 0},
jpayne@68 19971 {(char *)"filename", __pyx_getprop_5pysam_10libchtslib_7HTSFile_filename, 0, (char *)0, 0},
jpayne@68 19972 {(char *)"mode", __pyx_getprop_5pysam_10libchtslib_7HTSFile_mode, 0, (char *)0, 0},
jpayne@68 19973 {(char *)"threads", __pyx_getprop_5pysam_10libchtslib_7HTSFile_threads, 0, (char *)0, 0},
jpayne@68 19974 {(char *)"index_filename", __pyx_getprop_5pysam_10libchtslib_7HTSFile_index_filename, 0, (char *)0, 0},
jpayne@68 19975 {(char *)"is_stream", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_stream, 0, (char *)0, 0},
jpayne@68 19976 {(char *)"is_remote", __pyx_getprop_5pysam_10libchtslib_7HTSFile_is_remote, 0, (char *)0, 0},
jpayne@68 19977 {(char *)"duplicate_filehandle", __pyx_getprop_5pysam_10libchtslib_7HTSFile_duplicate_filehandle, 0, (char *)0, 0},
jpayne@68 19978 {0, 0, 0, 0, 0}
jpayne@68 19979 };
jpayne@68 19980 #if CYTHON_USE_TYPE_SPECS
jpayne@68 19981 static PyType_Slot __pyx_type_5pysam_10libchtslib_HTSFile_slots[] = {
jpayne@68 19982 {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_10libchtslib_HTSFile},
jpayne@68 19983 {Py_tp_doc, (void *)PyDoc_STR("\n Base class for HTS file types\n ")},
jpayne@68 19984 {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_10libchtslib_HTSFile},
jpayne@68 19985 {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_10libchtslib_HTSFile},
jpayne@68 19986 {Py_tp_methods, (void *)__pyx_methods_5pysam_10libchtslib_HTSFile},
jpayne@68 19987 {Py_tp_getset, (void *)__pyx_getsets_5pysam_10libchtslib_HTSFile},
jpayne@68 19988 {Py_tp_new, (void *)__pyx_tp_new_5pysam_10libchtslib_HTSFile},
jpayne@68 19989 {0, 0},
jpayne@68 19990 };
jpayne@68 19991 static PyType_Spec __pyx_type_5pysam_10libchtslib_HTSFile_spec = {
jpayne@68 19992 "pysam.libchtslib.HTSFile",
jpayne@68 19993 sizeof(struct __pyx_obj_5pysam_10libchtslib_HTSFile),
jpayne@68 19994 0,
jpayne@68 19995 Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC,
jpayne@68 19996 __pyx_type_5pysam_10libchtslib_HTSFile_slots,
jpayne@68 19997 };
jpayne@68 19998 #else
jpayne@68 19999
jpayne@68 20000 static PyTypeObject __pyx_type_5pysam_10libchtslib_HTSFile = {
jpayne@68 20001 PyVarObject_HEAD_INIT(0, 0)
jpayne@68 20002 "pysam.libchtslib.""HTSFile", /*tp_name*/
jpayne@68 20003 sizeof(struct __pyx_obj_5pysam_10libchtslib_HTSFile), /*tp_basicsize*/
jpayne@68 20004 0, /*tp_itemsize*/
jpayne@68 20005 __pyx_tp_dealloc_5pysam_10libchtslib_HTSFile, /*tp_dealloc*/
jpayne@68 20006 #if PY_VERSION_HEX < 0x030800b4
jpayne@68 20007 0, /*tp_print*/
jpayne@68 20008 #endif
jpayne@68 20009 #if PY_VERSION_HEX >= 0x030800b4
jpayne@68 20010 0, /*tp_vectorcall_offset*/
jpayne@68 20011 #endif
jpayne@68 20012 0, /*tp_getattr*/
jpayne@68 20013 0, /*tp_setattr*/
jpayne@68 20014 #if PY_MAJOR_VERSION < 3
jpayne@68 20015 0, /*tp_compare*/
jpayne@68 20016 #endif
jpayne@68 20017 #if PY_MAJOR_VERSION >= 3
jpayne@68 20018 0, /*tp_as_async*/
jpayne@68 20019 #endif
jpayne@68 20020 0, /*tp_repr*/
jpayne@68 20021 0, /*tp_as_number*/
jpayne@68 20022 0, /*tp_as_sequence*/
jpayne@68 20023 0, /*tp_as_mapping*/
jpayne@68 20024 0, /*tp_hash*/
jpayne@68 20025 0, /*tp_call*/
jpayne@68 20026 0, /*tp_str*/
jpayne@68 20027 0, /*tp_getattro*/
jpayne@68 20028 0, /*tp_setattro*/
jpayne@68 20029 0, /*tp_as_buffer*/
jpayne@68 20030 Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
jpayne@68 20031 PyDoc_STR("\n Base class for HTS file types\n "), /*tp_doc*/
jpayne@68 20032 __pyx_tp_traverse_5pysam_10libchtslib_HTSFile, /*tp_traverse*/
jpayne@68 20033 __pyx_tp_clear_5pysam_10libchtslib_HTSFile, /*tp_clear*/
jpayne@68 20034 0, /*tp_richcompare*/
jpayne@68 20035 0, /*tp_weaklistoffset*/
jpayne@68 20036 0, /*tp_iter*/
jpayne@68 20037 0, /*tp_iternext*/
jpayne@68 20038 __pyx_methods_5pysam_10libchtslib_HTSFile, /*tp_methods*/
jpayne@68 20039 0, /*tp_members*/
jpayne@68 20040 __pyx_getsets_5pysam_10libchtslib_HTSFile, /*tp_getset*/
jpayne@68 20041 0, /*tp_base*/
jpayne@68 20042 0, /*tp_dict*/
jpayne@68 20043 0, /*tp_descr_get*/
jpayne@68 20044 0, /*tp_descr_set*/
jpayne@68 20045 #if !CYTHON_USE_TYPE_SPECS
jpayne@68 20046 0, /*tp_dictoffset*/
jpayne@68 20047 #endif
jpayne@68 20048 0, /*tp_init*/
jpayne@68 20049 0, /*tp_alloc*/
jpayne@68 20050 __pyx_tp_new_5pysam_10libchtslib_HTSFile, /*tp_new*/
jpayne@68 20051 0, /*tp_free*/
jpayne@68 20052 0, /*tp_is_gc*/
jpayne@68 20053 0, /*tp_bases*/
jpayne@68 20054 0, /*tp_mro*/
jpayne@68 20055 0, /*tp_cache*/
jpayne@68 20056 0, /*tp_subclasses*/
jpayne@68 20057 0, /*tp_weaklist*/
jpayne@68 20058 0, /*tp_del*/
jpayne@68 20059 0, /*tp_version_tag*/
jpayne@68 20060 #if PY_VERSION_HEX >= 0x030400a1
jpayne@68 20061 #if CYTHON_USE_TP_FINALIZE
jpayne@68 20062 0, /*tp_finalize*/
jpayne@68 20063 #else
jpayne@68 20064 NULL, /*tp_finalize*/
jpayne@68 20065 #endif
jpayne@68 20066 #endif
jpayne@68 20067 #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
jpayne@68 20068 0, /*tp_vectorcall*/
jpayne@68 20069 #endif
jpayne@68 20070 #if __PYX_NEED_TP_PRINT_SLOT == 1
jpayne@68 20071 0, /*tp_print*/
jpayne@68 20072 #endif
jpayne@68 20073 #if PY_VERSION_HEX >= 0x030C0000
jpayne@68 20074 0, /*tp_watched*/
jpayne@68 20075 #endif
jpayne@68 20076 #if PY_VERSION_HEX >= 0x030d00A4
jpayne@68 20077 0, /*tp_versions_used*/
jpayne@68 20078 #endif
jpayne@68 20079 #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000
jpayne@68 20080 0, /*tp_pypy_flags*/
jpayne@68 20081 #endif
jpayne@68 20082 };
jpayne@68 20083 #endif
jpayne@68 20084 static struct __pyx_vtabstruct_5pysam_10libchtslib_HFile __pyx_vtable_5pysam_10libchtslib_HFile;
jpayne@68 20085
jpayne@68 20086 static PyObject *__pyx_tp_new_5pysam_10libchtslib_HFile(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
jpayne@68 20087 struct __pyx_obj_5pysam_10libchtslib_HFile *p;
jpayne@68 20088 PyObject *o;
jpayne@68 20089 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 20090 allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc);
jpayne@68 20091 o = alloc_func(t, 0);
jpayne@68 20092 #else
jpayne@68 20093 if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) {
jpayne@68 20094 o = (*t->tp_alloc)(t, 0);
jpayne@68 20095 } else {
jpayne@68 20096 o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
jpayne@68 20097 }
jpayne@68 20098 if (unlikely(!o)) return 0;
jpayne@68 20099 #endif
jpayne@68 20100 p = ((struct __pyx_obj_5pysam_10libchtslib_HFile *)o);
jpayne@68 20101 p->__pyx_vtab = __pyx_vtabptr_5pysam_10libchtslib_HFile;
jpayne@68 20102 p->name = Py_None; Py_INCREF(Py_None);
jpayne@68 20103 p->mode = Py_None; Py_INCREF(Py_None);
jpayne@68 20104 return o;
jpayne@68 20105 }
jpayne@68 20106
jpayne@68 20107 static void __pyx_tp_dealloc_5pysam_10libchtslib_HFile(PyObject *o) {
jpayne@68 20108 struct __pyx_obj_5pysam_10libchtslib_HFile *p = (struct __pyx_obj_5pysam_10libchtslib_HFile *)o;
jpayne@68 20109 #if CYTHON_USE_TP_FINALIZE
jpayne@68 20110 if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) {
jpayne@68 20111 if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_10libchtslib_HFile) {
jpayne@68 20112 if (PyObject_CallFinalizerFromDealloc(o)) return;
jpayne@68 20113 }
jpayne@68 20114 }
jpayne@68 20115 #endif
jpayne@68 20116 PyObject_GC_UnTrack(o);
jpayne@68 20117 {
jpayne@68 20118 PyObject *etype, *eval, *etb;
jpayne@68 20119 PyErr_Fetch(&etype, &eval, &etb);
jpayne@68 20120 __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1);
jpayne@68 20121 __pyx_pw_5pysam_10libchtslib_5HFile_3__dealloc__(o);
jpayne@68 20122 __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1);
jpayne@68 20123 PyErr_Restore(etype, eval, etb);
jpayne@68 20124 }
jpayne@68 20125 Py_CLEAR(p->name);
jpayne@68 20126 Py_CLEAR(p->mode);
jpayne@68 20127 #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY
jpayne@68 20128 (*Py_TYPE(o)->tp_free)(o);
jpayne@68 20129 #else
jpayne@68 20130 {
jpayne@68 20131 freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free);
jpayne@68 20132 if (tp_free) tp_free(o);
jpayne@68 20133 }
jpayne@68 20134 #endif
jpayne@68 20135 }
jpayne@68 20136
jpayne@68 20137 static int __pyx_tp_traverse_5pysam_10libchtslib_HFile(PyObject *o, visitproc v, void *a) {
jpayne@68 20138 int e;
jpayne@68 20139 struct __pyx_obj_5pysam_10libchtslib_HFile *p = (struct __pyx_obj_5pysam_10libchtslib_HFile *)o;
jpayne@68 20140 if (p->name) {
jpayne@68 20141 e = (*v)(p->name, a); if (e) return e;
jpayne@68 20142 }
jpayne@68 20143 if (p->mode) {
jpayne@68 20144 e = (*v)(p->mode, a); if (e) return e;
jpayne@68 20145 }
jpayne@68 20146 return 0;
jpayne@68 20147 }
jpayne@68 20148
jpayne@68 20149 static int __pyx_tp_clear_5pysam_10libchtslib_HFile(PyObject *o) {
jpayne@68 20150 PyObject* tmp;
jpayne@68 20151 struct __pyx_obj_5pysam_10libchtslib_HFile *p = (struct __pyx_obj_5pysam_10libchtslib_HFile *)o;
jpayne@68 20152 tmp = ((PyObject*)p->name);
jpayne@68 20153 p->name = Py_None; Py_INCREF(Py_None);
jpayne@68 20154 Py_XDECREF(tmp);
jpayne@68 20155 tmp = ((PyObject*)p->mode);
jpayne@68 20156 p->mode = Py_None; Py_INCREF(Py_None);
jpayne@68 20157 Py_XDECREF(tmp);
jpayne@68 20158 return 0;
jpayne@68 20159 }
jpayne@68 20160
jpayne@68 20161 static PyObject *__pyx_getprop_5pysam_10libchtslib_5HFile_closed(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 20162 return __pyx_pw_5pysam_10libchtslib_5HFile_6closed_1__get__(o);
jpayne@68 20163 }
jpayne@68 20164
jpayne@68 20165 static PyObject *__pyx_getprop_5pysam_10libchtslib_5HFile_name(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 20166 return __pyx_pw_5pysam_10libchtslib_5HFile_4name_1__get__(o);
jpayne@68 20167 }
jpayne@68 20168
jpayne@68 20169 static PyObject *__pyx_getprop_5pysam_10libchtslib_5HFile_mode(PyObject *o, CYTHON_UNUSED void *x) {
jpayne@68 20170 return __pyx_pw_5pysam_10libchtslib_5HFile_4mode_1__get__(o);
jpayne@68 20171 }
jpayne@68 20172
jpayne@68 20173 static PyObject *__pyx_specialmethod___pyx_pw_5pysam_10libchtslib_5HFile_15__next__(PyObject *self, CYTHON_UNUSED PyObject *arg) {
jpayne@68 20174 PyObject *res = __pyx_pw_5pysam_10libchtslib_5HFile_15__next__(self);
jpayne@68 20175 if (!res && !PyErr_Occurred()) { PyErr_SetNone(PyExc_StopIteration); }
jpayne@68 20176 return res;
jpayne@68 20177 }
jpayne@68 20178
jpayne@68 20179 static PyMethodDef __pyx_methods_5pysam_10libchtslib_HFile[] = {
jpayne@68 20180 {"close", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_5close, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_4close},
jpayne@68 20181 {"fileno", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_7fileno, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_6fileno},
jpayne@68 20182 {"__enter__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_9__enter__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_8__enter__},
jpayne@68 20183 {"__exit__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_11__exit__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_10__exit__},
jpayne@68 20184 {"__next__", (PyCFunction)__pyx_specialmethod___pyx_pw_5pysam_10libchtslib_5HFile_15__next__, METH_NOARGS|METH_COEXIST, 0},
jpayne@68 20185 {"flush", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_17flush, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_16flush},
jpayne@68 20186 {"isatty", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_19isatty, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_18isatty},
jpayne@68 20187 {"readable", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_21readable, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_20readable},
jpayne@68 20188 {"read", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_23read, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_22read},
jpayne@68 20189 {"readall", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_25readall, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_24readall},
jpayne@68 20190 {"readinto", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_27readinto, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_26readinto},
jpayne@68 20191 {"readline", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_29readline, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_28readline},
jpayne@68 20192 {"readlines", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_31readlines, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_30readlines},
jpayne@68 20193 {"seek", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_33seek, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_32seek},
jpayne@68 20194 {"tell", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_35tell, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_34tell},
jpayne@68 20195 {"seekable", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_37seekable, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_36seekable},
jpayne@68 20196 {"truncate", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_39truncate, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_38truncate},
jpayne@68 20197 {"writable", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_41writable, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_40writable},
jpayne@68 20198 {"write", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_43write, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_42write},
jpayne@68 20199 {"writelines", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_45writelines, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_44writelines},
jpayne@68 20200 {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_47__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_46__reduce_cython__},
jpayne@68 20201 {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_10libchtslib_5HFile_49__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_10libchtslib_5HFile_48__setstate_cython__},
jpayne@68 20202 {0, 0, 0, 0}
jpayne@68 20203 };
jpayne@68 20204
jpayne@68 20205 static struct PyGetSetDef __pyx_getsets_5pysam_10libchtslib_HFile[] = {
jpayne@68 20206 {(char *)"closed", __pyx_getprop_5pysam_10libchtslib_5HFile_closed, 0, (char *)0, 0},
jpayne@68 20207 {(char *)"name", __pyx_getprop_5pysam_10libchtslib_5HFile_name, 0, (char *)0, 0},
jpayne@68 20208 {(char *)"mode", __pyx_getprop_5pysam_10libchtslib_5HFile_mode, 0, (char *)0, 0},
jpayne@68 20209 {0, 0, 0, 0, 0}
jpayne@68 20210 };
jpayne@68 20211 #if CYTHON_USE_TYPE_SPECS
jpayne@68 20212 static PyType_Slot __pyx_type_5pysam_10libchtslib_HFile_slots[] = {
jpayne@68 20213 {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_10libchtslib_HFile},
jpayne@68 20214 {Py_tp_doc, (void *)PyDoc_STR("HFile(name, mode=u'r', closefd=True)")},
jpayne@68 20215 {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_10libchtslib_HFile},
jpayne@68 20216 {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_10libchtslib_HFile},
jpayne@68 20217 {Py_tp_iter, (void *)__pyx_pw_5pysam_10libchtslib_5HFile_13__iter__},
jpayne@68 20218 {Py_tp_iternext, (void *)__pyx_pw_5pysam_10libchtslib_5HFile_15__next__},
jpayne@68 20219 {Py_tp_methods, (void *)__pyx_methods_5pysam_10libchtslib_HFile},
jpayne@68 20220 {Py_tp_getset, (void *)__pyx_getsets_5pysam_10libchtslib_HFile},
jpayne@68 20221 {Py_tp_init, (void *)__pyx_pw_5pysam_10libchtslib_5HFile_1__init__},
jpayne@68 20222 {Py_tp_new, (void *)__pyx_tp_new_5pysam_10libchtslib_HFile},
jpayne@68 20223 {0, 0},
jpayne@68 20224 };
jpayne@68 20225 static PyType_Spec __pyx_type_5pysam_10libchtslib_HFile_spec = {
jpayne@68 20226 "pysam.libchtslib.HFile",
jpayne@68 20227 sizeof(struct __pyx_obj_5pysam_10libchtslib_HFile),
jpayne@68 20228 0,
jpayne@68 20229 Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC,
jpayne@68 20230 __pyx_type_5pysam_10libchtslib_HFile_slots,
jpayne@68 20231 };
jpayne@68 20232 #else
jpayne@68 20233
jpayne@68 20234 static PyTypeObject __pyx_type_5pysam_10libchtslib_HFile = {
jpayne@68 20235 PyVarObject_HEAD_INIT(0, 0)
jpayne@68 20236 "pysam.libchtslib.""HFile", /*tp_name*/
jpayne@68 20237 sizeof(struct __pyx_obj_5pysam_10libchtslib_HFile), /*tp_basicsize*/
jpayne@68 20238 0, /*tp_itemsize*/
jpayne@68 20239 __pyx_tp_dealloc_5pysam_10libchtslib_HFile, /*tp_dealloc*/
jpayne@68 20240 #if PY_VERSION_HEX < 0x030800b4
jpayne@68 20241 0, /*tp_print*/
jpayne@68 20242 #endif
jpayne@68 20243 #if PY_VERSION_HEX >= 0x030800b4
jpayne@68 20244 0, /*tp_vectorcall_offset*/
jpayne@68 20245 #endif
jpayne@68 20246 0, /*tp_getattr*/
jpayne@68 20247 0, /*tp_setattr*/
jpayne@68 20248 #if PY_MAJOR_VERSION < 3
jpayne@68 20249 0, /*tp_compare*/
jpayne@68 20250 #endif
jpayne@68 20251 #if PY_MAJOR_VERSION >= 3
jpayne@68 20252 0, /*tp_as_async*/
jpayne@68 20253 #endif
jpayne@68 20254 0, /*tp_repr*/
jpayne@68 20255 0, /*tp_as_number*/
jpayne@68 20256 0, /*tp_as_sequence*/
jpayne@68 20257 0, /*tp_as_mapping*/
jpayne@68 20258 0, /*tp_hash*/
jpayne@68 20259 0, /*tp_call*/
jpayne@68 20260 0, /*tp_str*/
jpayne@68 20261 0, /*tp_getattro*/
jpayne@68 20262 0, /*tp_setattro*/
jpayne@68 20263 0, /*tp_as_buffer*/
jpayne@68 20264 Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
jpayne@68 20265 PyDoc_STR("HFile(name, mode=u'r', closefd=True)"), /*tp_doc*/
jpayne@68 20266 __pyx_tp_traverse_5pysam_10libchtslib_HFile, /*tp_traverse*/
jpayne@68 20267 __pyx_tp_clear_5pysam_10libchtslib_HFile, /*tp_clear*/
jpayne@68 20268 0, /*tp_richcompare*/
jpayne@68 20269 0, /*tp_weaklistoffset*/
jpayne@68 20270 __pyx_pw_5pysam_10libchtslib_5HFile_13__iter__, /*tp_iter*/
jpayne@68 20271 __pyx_pw_5pysam_10libchtslib_5HFile_15__next__, /*tp_iternext*/
jpayne@68 20272 __pyx_methods_5pysam_10libchtslib_HFile, /*tp_methods*/
jpayne@68 20273 0, /*tp_members*/
jpayne@68 20274 __pyx_getsets_5pysam_10libchtslib_HFile, /*tp_getset*/
jpayne@68 20275 0, /*tp_base*/
jpayne@68 20276 0, /*tp_dict*/
jpayne@68 20277 0, /*tp_descr_get*/
jpayne@68 20278 0, /*tp_descr_set*/
jpayne@68 20279 #if !CYTHON_USE_TYPE_SPECS
jpayne@68 20280 0, /*tp_dictoffset*/
jpayne@68 20281 #endif
jpayne@68 20282 __pyx_pw_5pysam_10libchtslib_5HFile_1__init__, /*tp_init*/
jpayne@68 20283 0, /*tp_alloc*/
jpayne@68 20284 __pyx_tp_new_5pysam_10libchtslib_HFile, /*tp_new*/
jpayne@68 20285 0, /*tp_free*/
jpayne@68 20286 0, /*tp_is_gc*/
jpayne@68 20287 0, /*tp_bases*/
jpayne@68 20288 0, /*tp_mro*/
jpayne@68 20289 0, /*tp_cache*/
jpayne@68 20290 0, /*tp_subclasses*/
jpayne@68 20291 0, /*tp_weaklist*/
jpayne@68 20292 0, /*tp_del*/
jpayne@68 20293 0, /*tp_version_tag*/
jpayne@68 20294 #if PY_VERSION_HEX >= 0x030400a1
jpayne@68 20295 #if CYTHON_USE_TP_FINALIZE
jpayne@68 20296 0, /*tp_finalize*/
jpayne@68 20297 #else
jpayne@68 20298 NULL, /*tp_finalize*/
jpayne@68 20299 #endif
jpayne@68 20300 #endif
jpayne@68 20301 #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
jpayne@68 20302 0, /*tp_vectorcall*/
jpayne@68 20303 #endif
jpayne@68 20304 #if __PYX_NEED_TP_PRINT_SLOT == 1
jpayne@68 20305 0, /*tp_print*/
jpayne@68 20306 #endif
jpayne@68 20307 #if PY_VERSION_HEX >= 0x030C0000
jpayne@68 20308 0, /*tp_watched*/
jpayne@68 20309 #endif
jpayne@68 20310 #if PY_VERSION_HEX >= 0x030d00A4
jpayne@68 20311 0, /*tp_versions_used*/
jpayne@68 20312 #endif
jpayne@68 20313 #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000
jpayne@68 20314 0, /*tp_pypy_flags*/
jpayne@68 20315 #endif
jpayne@68 20316 };
jpayne@68 20317 #endif
jpayne@68 20318
jpayne@68 20319 static PyMethodDef __pyx_methods[] = {
jpayne@68 20320 {0, 0, 0, 0}
jpayne@68 20321 };
jpayne@68 20322 #ifndef CYTHON_SMALL_CODE
jpayne@68 20323 #if defined(__clang__)
jpayne@68 20324 #define CYTHON_SMALL_CODE
jpayne@68 20325 #elif defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3))
jpayne@68 20326 #define CYTHON_SMALL_CODE __attribute__((cold))
jpayne@68 20327 #else
jpayne@68 20328 #define CYTHON_SMALL_CODE
jpayne@68 20329 #endif
jpayne@68 20330 #endif
jpayne@68 20331 /* #### Code section: pystring_table ### */
jpayne@68 20332
jpayne@68 20333 static int __Pyx_CreateStringTabAndInitStrings(void) {
jpayne@68 20334 __Pyx_StringTabEntry __pyx_string_tab[] = {
jpayne@68 20335 {&__pyx_n_u_ALIGNMENTS, __pyx_k_ALIGNMENTS, sizeof(__pyx_k_ALIGNMENTS), 0, 1, 0, 1},
jpayne@68 20336 {&__pyx_kp_u_An_error_occurred_while_applying, __pyx_k_An_error_occurred_while_applying, sizeof(__pyx_k_An_error_occurred_while_applying), 0, 1, 0, 0},
jpayne@68 20337 {&__pyx_n_s_AttributeError, __pyx_k_AttributeError, sizeof(__pyx_k_AttributeError), 0, 0, 1, 1},
jpayne@68 20338 {&__pyx_n_u_BAI, __pyx_k_BAI, sizeof(__pyx_k_BAI), 0, 1, 0, 1},
jpayne@68 20339 {&__pyx_n_u_BAM, __pyx_k_BAM, sizeof(__pyx_k_BAM), 0, 1, 0, 1},
jpayne@68 20340 {&__pyx_n_u_BCF, __pyx_k_BCF, sizeof(__pyx_k_BCF), 0, 1, 0, 1},
jpayne@68 20341 {&__pyx_n_u_BED, __pyx_k_BED, sizeof(__pyx_k_BED), 0, 1, 0, 1},
jpayne@68 20342 {&__pyx_n_u_BGZF, __pyx_k_BGZF, sizeof(__pyx_k_BGZF), 0, 1, 0, 1},
jpayne@68 20343 {&__pyx_n_u_BINARY_FORMAT, __pyx_k_BINARY_FORMAT, sizeof(__pyx_k_BINARY_FORMAT), 0, 1, 0, 1},
jpayne@68 20344 {&__pyx_n_s_CFalse, __pyx_k_CFalse, sizeof(__pyx_k_CFalse), 0, 0, 1, 1},
jpayne@68 20345 {&__pyx_n_u_CRAI, __pyx_k_CRAI, sizeof(__pyx_k_CRAI), 0, 1, 0, 1},
jpayne@68 20346 {&__pyx_n_u_CRAM, __pyx_k_CRAM, sizeof(__pyx_k_CRAM), 0, 1, 0, 1},
jpayne@68 20347 {&__pyx_n_u_CSI, __pyx_k_CSI, sizeof(__pyx_k_CSI), 0, 1, 0, 1},
jpayne@68 20348 {&__pyx_n_s_CTrue, __pyx_k_CTrue, sizeof(__pyx_k_CTrue), 0, 0, 1, 1},
jpayne@68 20349 {&__pyx_n_u_CUSTOM, __pyx_k_CUSTOM, sizeof(__pyx_k_CUSTOM), 0, 1, 0, 1},
jpayne@68 20350 {&__pyx_n_s_CallableValue, __pyx_k_CallableValue, sizeof(__pyx_k_CallableValue), 0, 0, 1, 1},
jpayne@68 20351 {&__pyx_n_s_CallableValue___bool, __pyx_k_CallableValue___bool, sizeof(__pyx_k_CallableValue___bool), 0, 0, 1, 1},
jpayne@68 20352 {&__pyx_n_s_CallableValue___call, __pyx_k_CallableValue___call, sizeof(__pyx_k_CallableValue___call), 0, 0, 1, 1},
jpayne@68 20353 {&__pyx_n_s_CallableValue___eq, __pyx_k_CallableValue___eq, sizeof(__pyx_k_CallableValue___eq), 0, 0, 1, 1},
jpayne@68 20354 {&__pyx_n_s_CallableValue___init, __pyx_k_CallableValue___init, sizeof(__pyx_k_CallableValue___init), 0, 0, 1, 1},
jpayne@68 20355 {&__pyx_n_s_CallableValue___ne, __pyx_k_CallableValue___ne, sizeof(__pyx_k_CallableValue___ne), 0, 0, 1, 1},
jpayne@68 20356 {&__pyx_n_s_CallableValue___nonzero, __pyx_k_CallableValue___nonzero, sizeof(__pyx_k_CallableValue___nonzero), 0, 0, 1, 1},
jpayne@68 20357 {&__pyx_kp_u_Cannot_create_hfile, __pyx_k_Cannot_create_hfile, sizeof(__pyx_k_Cannot_create_hfile), 0, 1, 0, 0},
jpayne@68 20358 {&__pyx_kp_u_Flushing, __pyx_k_Flushing, sizeof(__pyx_k_Flushing), 0, 1, 0, 0},
jpayne@68 20359 {&__pyx_n_u_GZI, __pyx_k_GZI, sizeof(__pyx_k_GZI), 0, 1, 0, 1},
jpayne@68 20360 {&__pyx_n_u_GZIP, __pyx_k_GZIP, sizeof(__pyx_k_GZIP), 0, 1, 0, 1},
jpayne@68 20361 {&__pyx_n_s_HFile, __pyx_k_HFile, sizeof(__pyx_k_HFile), 0, 0, 1, 1},
jpayne@68 20362 {&__pyx_n_u_HFile, __pyx_k_HFile, sizeof(__pyx_k_HFile), 0, 1, 0, 1},
jpayne@68 20363 {&__pyx_n_s_HFile___enter, __pyx_k_HFile___enter, sizeof(__pyx_k_HFile___enter), 0, 0, 1, 1},
jpayne@68 20364 {&__pyx_n_s_HFile___exit, __pyx_k_HFile___exit, sizeof(__pyx_k_HFile___exit), 0, 0, 1, 1},
jpayne@68 20365 {&__pyx_n_s_HFile___reduce_cython, __pyx_k_HFile___reduce_cython, sizeof(__pyx_k_HFile___reduce_cython), 0, 0, 1, 1},
jpayne@68 20366 {&__pyx_n_s_HFile___setstate_cython, __pyx_k_HFile___setstate_cython, sizeof(__pyx_k_HFile___setstate_cython), 0, 0, 1, 1},
jpayne@68 20367 {&__pyx_n_s_HFile_close, __pyx_k_HFile_close, sizeof(__pyx_k_HFile_close), 0, 0, 1, 1},
jpayne@68 20368 {&__pyx_n_s_HFile_fileno, __pyx_k_HFile_fileno, sizeof(__pyx_k_HFile_fileno), 0, 0, 1, 1},
jpayne@68 20369 {&__pyx_n_s_HFile_flush, __pyx_k_HFile_flush, sizeof(__pyx_k_HFile_flush), 0, 0, 1, 1},
jpayne@68 20370 {&__pyx_n_s_HFile_isatty, __pyx_k_HFile_isatty, sizeof(__pyx_k_HFile_isatty), 0, 0, 1, 1},
jpayne@68 20371 {&__pyx_n_s_HFile_read, __pyx_k_HFile_read, sizeof(__pyx_k_HFile_read), 0, 0, 1, 1},
jpayne@68 20372 {&__pyx_n_s_HFile_readable, __pyx_k_HFile_readable, sizeof(__pyx_k_HFile_readable), 0, 0, 1, 1},
jpayne@68 20373 {&__pyx_n_s_HFile_readall, __pyx_k_HFile_readall, sizeof(__pyx_k_HFile_readall), 0, 0, 1, 1},
jpayne@68 20374 {&__pyx_n_s_HFile_readinto, __pyx_k_HFile_readinto, sizeof(__pyx_k_HFile_readinto), 0, 0, 1, 1},
jpayne@68 20375 {&__pyx_n_s_HFile_readline, __pyx_k_HFile_readline, sizeof(__pyx_k_HFile_readline), 0, 0, 1, 1},
jpayne@68 20376 {&__pyx_n_s_HFile_readlines, __pyx_k_HFile_readlines, sizeof(__pyx_k_HFile_readlines), 0, 0, 1, 1},
jpayne@68 20377 {&__pyx_n_s_HFile_seek, __pyx_k_HFile_seek, sizeof(__pyx_k_HFile_seek), 0, 0, 1, 1},
jpayne@68 20378 {&__pyx_n_s_HFile_seekable, __pyx_k_HFile_seekable, sizeof(__pyx_k_HFile_seekable), 0, 0, 1, 1},
jpayne@68 20379 {&__pyx_n_s_HFile_tell, __pyx_k_HFile_tell, sizeof(__pyx_k_HFile_tell), 0, 0, 1, 1},
jpayne@68 20380 {&__pyx_n_s_HFile_truncate, __pyx_k_HFile_truncate, sizeof(__pyx_k_HFile_truncate), 0, 0, 1, 1},
jpayne@68 20381 {&__pyx_n_s_HFile_writable, __pyx_k_HFile_writable, sizeof(__pyx_k_HFile_writable), 0, 0, 1, 1},
jpayne@68 20382 {&__pyx_n_s_HFile_write, __pyx_k_HFile_write, sizeof(__pyx_k_HFile_write), 0, 0, 1, 1},
jpayne@68 20383 {&__pyx_n_s_HFile_writelines, __pyx_k_HFile_writelines, sizeof(__pyx_k_HFile_writelines), 0, 0, 1, 1},
jpayne@68 20384 {&__pyx_n_s_HTSFile, __pyx_k_HTSFile, sizeof(__pyx_k_HTSFile), 0, 0, 1, 1},
jpayne@68 20385 {&__pyx_n_u_HTSFile, __pyx_k_HTSFile, sizeof(__pyx_k_HTSFile), 0, 1, 0, 1},
jpayne@68 20386 {&__pyx_n_s_HTSFile___enter, __pyx_k_HTSFile___enter, sizeof(__pyx_k_HTSFile___enter), 0, 0, 1, 1},
jpayne@68 20387 {&__pyx_n_s_HTSFile___exit, __pyx_k_HTSFile___exit, sizeof(__pyx_k_HTSFile___exit), 0, 0, 1, 1},
jpayne@68 20388 {&__pyx_n_s_HTSFile___reduce_cython, __pyx_k_HTSFile___reduce_cython, sizeof(__pyx_k_HTSFile___reduce_cython), 0, 0, 1, 1},
jpayne@68 20389 {&__pyx_n_s_HTSFile___setstate_cython, __pyx_k_HTSFile___setstate_cython, sizeof(__pyx_k_HTSFile___setstate_cython), 0, 0, 1, 1},
jpayne@68 20390 {&__pyx_n_s_HTSFile_add_hts_options, __pyx_k_HTSFile_add_hts_options, sizeof(__pyx_k_HTSFile_add_hts_options), 0, 0, 1, 1},
jpayne@68 20391 {&__pyx_n_s_HTSFile_check_truncation, __pyx_k_HTSFile_check_truncation, sizeof(__pyx_k_HTSFile_check_truncation), 0, 0, 1, 1},
jpayne@68 20392 {&__pyx_n_s_HTSFile_close, __pyx_k_HTSFile_close, sizeof(__pyx_k_HTSFile_close), 0, 0, 1, 1},
jpayne@68 20393 {&__pyx_n_s_HTSFile_flush, __pyx_k_HTSFile_flush, sizeof(__pyx_k_HTSFile_flush), 0, 0, 1, 1},
jpayne@68 20394 {&__pyx_n_s_HTSFile_get_reference_name, __pyx_k_HTSFile_get_reference_name, sizeof(__pyx_k_HTSFile_get_reference_name), 0, 0, 1, 1},
jpayne@68 20395 {&__pyx_n_s_HTSFile_get_tid, __pyx_k_HTSFile_get_tid, sizeof(__pyx_k_HTSFile_get_tid), 0, 0, 1, 1},
jpayne@68 20396 {&__pyx_n_s_HTSFile_is_valid_reference_name, __pyx_k_HTSFile_is_valid_reference_name, sizeof(__pyx_k_HTSFile_is_valid_reference_name), 0, 0, 1, 1},
jpayne@68 20397 {&__pyx_n_s_HTSFile_is_valid_tid, __pyx_k_HTSFile_is_valid_tid, sizeof(__pyx_k_HTSFile_is_valid_tid), 0, 0, 1, 1},
jpayne@68 20398 {&__pyx_n_s_HTSFile_parse_region, __pyx_k_HTSFile_parse_region, sizeof(__pyx_k_HTSFile_parse_region), 0, 0, 1, 1},
jpayne@68 20399 {&__pyx_n_s_HTSFile_reset, __pyx_k_HTSFile_reset, sizeof(__pyx_k_HTSFile_reset), 0, 0, 1, 1},
jpayne@68 20400 {&__pyx_n_s_HTSFile_seek, __pyx_k_HTSFile_seek, sizeof(__pyx_k_HTSFile_seek), 0, 0, 1, 1},
jpayne@68 20401 {&__pyx_n_s_HTSFile_tell, __pyx_k_HTSFile_tell, sizeof(__pyx_k_HTSFile_tell), 0, 0, 1, 1},
jpayne@68 20402 {&__pyx_n_u_INDEX, __pyx_k_INDEX, sizeof(__pyx_k_INDEX), 0, 1, 0, 1},
jpayne@68 20403 {&__pyx_n_s_IOError, __pyx_k_IOError, sizeof(__pyx_k_IOError), 0, 0, 1, 1},
jpayne@68 20404 {&__pyx_kp_u_I_O_operation_on_closed_file, __pyx_k_I_O_operation_on_closed_file, sizeof(__pyx_k_I_O_operation_on_closed_file), 0, 1, 0, 0},
jpayne@68 20405 {&__pyx_n_s_IndexError, __pyx_k_IndexError, sizeof(__pyx_k_IndexError), 0, 0, 1, 1},
jpayne@68 20406 {&__pyx_kp_u_Invalid_format_option_specified, __pyx_k_Invalid_format_option_specified, sizeof(__pyx_k_Invalid_format_option_specified), 0, 1, 0, 0},
jpayne@68 20407 {&__pyx_n_s_MemoryError, __pyx_k_MemoryError, sizeof(__pyx_k_MemoryError), 0, 0, 1, 1},
jpayne@68 20408 {&__pyx_n_u_NONE, __pyx_k_NONE, sizeof(__pyx_k_NONE), 0, 1, 0, 1},
jpayne@68 20409 {&__pyx_n_s_NotImplementedError, __pyx_k_NotImplementedError, sizeof(__pyx_k_NotImplementedError), 0, 0, 1, 1},
jpayne@68 20410 {&__pyx_n_s_OSError, __pyx_k_OSError, sizeof(__pyx_k_OSError), 0, 0, 1, 1},
jpayne@68 20411 {&__pyx_n_s_OverflowError, __pyx_k_OverflowError, sizeof(__pyx_k_OverflowError), 0, 0, 1, 1},
jpayne@68 20412 {&__pyx_n_u_REGIONS, __pyx_k_REGIONS, sizeof(__pyx_k_REGIONS), 0, 1, 0, 1},
jpayne@68 20413 {&__pyx_n_s_RuntimeError, __pyx_k_RuntimeError, sizeof(__pyx_k_RuntimeError), 0, 0, 1, 1},
jpayne@68 20414 {&__pyx_n_u_SAM, __pyx_k_SAM, sizeof(__pyx_k_SAM), 0, 1, 0, 1},
jpayne@68 20415 {&__pyx_n_s_SEEK_SET, __pyx_k_SEEK_SET, sizeof(__pyx_k_SEEK_SET), 0, 0, 1, 1},
jpayne@68 20416 {&__pyx_n_s_StopIteration, __pyx_k_StopIteration, sizeof(__pyx_k_StopIteration), 0, 0, 1, 1},
jpayne@68 20417 {&__pyx_n_u_TBI, __pyx_k_TBI, sizeof(__pyx_k_TBI), 0, 1, 0, 1},
jpayne@68 20418 {&__pyx_n_u_TEXT_FORMAT, __pyx_k_TEXT_FORMAT, sizeof(__pyx_k_TEXT_FORMAT), 0, 1, 0, 1},
jpayne@68 20419 {&__pyx_n_s_TypeError, __pyx_k_TypeError, sizeof(__pyx_k_TypeError), 0, 0, 1, 1},
jpayne@68 20420 {&__pyx_n_u_UNKNOWN, __pyx_k_UNKNOWN, sizeof(__pyx_k_UNKNOWN), 0, 1, 0, 1},
jpayne@68 20421 {&__pyx_n_u_VARIANTS, __pyx_k_VARIANTS, sizeof(__pyx_k_VARIANTS), 0, 1, 0, 1},
jpayne@68 20422 {&__pyx_n_u_VCF, __pyx_k_VCF, sizeof(__pyx_k_VCF), 0, 1, 0, 1},
jpayne@68 20423 {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1},
jpayne@68 20424 {&__pyx_kp_b__13, __pyx_k__13, sizeof(__pyx_k__13), 0, 0, 0, 0},
jpayne@68 20425 {&__pyx_kp_u__55, __pyx_k__55, sizeof(__pyx_k__55), 0, 1, 0, 0},
jpayne@68 20426 {&__pyx_kp_u__56, __pyx_k__56, sizeof(__pyx_k__56), 0, 1, 0, 0},
jpayne@68 20427 {&__pyx_n_s__58, __pyx_k__58, sizeof(__pyx_k__58), 0, 0, 1, 1},
jpayne@68 20428 {&__pyx_kp_u__58, __pyx_k__58, sizeof(__pyx_k__58), 0, 1, 0, 0},
jpayne@68 20429 {&__pyx_kp_u__59, __pyx_k__59, sizeof(__pyx_k__59), 0, 1, 0, 0},
jpayne@68 20430 {&__pyx_n_s__97, __pyx_k__97, sizeof(__pyx_k__97), 0, 0, 1, 1},
jpayne@68 20431 {&__pyx_n_s_add_hts_options, __pyx_k_add_hts_options, sizeof(__pyx_k_add_hts_options), 0, 0, 1, 1},
jpayne@68 20432 {&__pyx_n_s_all, __pyx_k_all, sizeof(__pyx_k_all), 0, 0, 1, 1},
jpayne@68 20433 {&__pyx_n_s_asyncio_coroutines, __pyx_k_asyncio_coroutines, sizeof(__pyx_k_asyncio_coroutines), 0, 0, 1, 1},
jpayne@68 20434 {&__pyx_n_b_b, __pyx_k_b, sizeof(__pyx_k_b), 0, 0, 0, 1},
jpayne@68 20435 {&__pyx_n_s_b, __pyx_k_b, sizeof(__pyx_k_b), 0, 0, 1, 1},
jpayne@68 20436 {&__pyx_n_s_bgzfp, __pyx_k_bgzfp, sizeof(__pyx_k_bgzfp), 0, 0, 1, 1},
jpayne@68 20437 {&__pyx_n_s_bool, __pyx_k_bool, sizeof(__pyx_k_bool), 0, 0, 1, 1},
jpayne@68 20438 {&__pyx_n_s_buf, __pyx_k_buf, sizeof(__pyx_k_buf), 0, 0, 1, 1},
jpayne@68 20439 {&__pyx_n_s_bytes_read, __pyx_k_bytes_read, sizeof(__pyx_k_bytes_read), 0, 0, 1, 1},
jpayne@68 20440 {&__pyx_n_b_c, __pyx_k_c, sizeof(__pyx_k_c), 0, 0, 0, 1},
jpayne@68 20441 {&__pyx_n_s_call, __pyx_k_call, sizeof(__pyx_k_call), 0, 0, 1, 1},
jpayne@68 20442 {&__pyx_n_s_check_truncation, __pyx_k_check_truncation, sizeof(__pyx_k_check_truncation), 0, 0, 1, 1},
jpayne@68 20443 {&__pyx_n_s_chunk_size, __pyx_k_chunk_size, sizeof(__pyx_k_chunk_size), 0, 0, 1, 1},
jpayne@68 20444 {&__pyx_n_s_class_getitem, __pyx_k_class_getitem, sizeof(__pyx_k_class_getitem), 0, 0, 1, 1},
jpayne@68 20445 {&__pyx_n_s_cline_in_traceback, __pyx_k_cline_in_traceback, sizeof(__pyx_k_cline_in_traceback), 0, 0, 1, 1},
jpayne@68 20446 {&__pyx_n_s_close, __pyx_k_close, sizeof(__pyx_k_close), 0, 0, 1, 1},
jpayne@68 20447 {&__pyx_n_s_closefd, __pyx_k_closefd, sizeof(__pyx_k_closefd), 0, 0, 1, 1},
jpayne@68 20448 {&__pyx_n_s_contig, __pyx_k_contig, sizeof(__pyx_k_contig), 0, 0, 1, 1},
jpayne@68 20449 {&__pyx_kp_u_contig_and_reference_should_not, __pyx_k_contig_and_reference_should_not, sizeof(__pyx_k_contig_and_reference_should_not), 0, 1, 0, 0},
jpayne@68 20450 {&__pyx_n_s_coord, __pyx_k_coord, sizeof(__pyx_k_coord), 0, 0, 1, 1},
jpayne@68 20451 {&__pyx_n_s_cpart, __pyx_k_cpart, sizeof(__pyx_k_cpart), 0, 0, 1, 1},
jpayne@68 20452 {&__pyx_n_s_dict, __pyx_k_dict, sizeof(__pyx_k_dict), 0, 0, 1, 1},
jpayne@68 20453 {&__pyx_kp_u_disable, __pyx_k_disable, sizeof(__pyx_k_disable), 0, 1, 0, 0},
jpayne@68 20454 {&__pyx_n_s_doc, __pyx_k_doc, sizeof(__pyx_k_doc), 0, 0, 1, 1},
jpayne@68 20455 {&__pyx_kp_u_enable, __pyx_k_enable, sizeof(__pyx_k_enable), 0, 1, 0, 0},
jpayne@68 20456 {&__pyx_n_s_end, __pyx_k_end, sizeof(__pyx_k_end), 0, 0, 1, 1},
jpayne@68 20457 {&__pyx_n_s_enter, __pyx_k_enter, sizeof(__pyx_k_enter), 0, 0, 1, 1},
jpayne@68 20458 {&__pyx_n_s_eq, __pyx_k_eq, sizeof(__pyx_k_eq), 0, 0, 1, 1},
jpayne@68 20459 {&__pyx_kp_u_error_checking_for_EOF_marker, __pyx_k_error_checking_for_EOF_marker, sizeof(__pyx_k_error_checking_for_EOF_marker), 0, 1, 0, 0},
jpayne@68 20460 {&__pyx_n_s_exc_type, __pyx_k_exc_type, sizeof(__pyx_k_exc_type), 0, 0, 1, 1},
jpayne@68 20461 {&__pyx_n_s_exc_value, __pyx_k_exc_value, sizeof(__pyx_k_exc_value), 0, 0, 1, 1},
jpayne@68 20462 {&__pyx_n_s_exit, __pyx_k_exit, sizeof(__pyx_k_exit), 0, 0, 1, 1},
jpayne@68 20463 {&__pyx_kp_u_failed, __pyx_k_failed, sizeof(__pyx_k_failed), 0, 1, 0, 0},
jpayne@68 20464 {&__pyx_kp_u_failed_to_close_HFile, __pyx_k_failed_to_close_HFile, sizeof(__pyx_k_failed_to_close_HFile), 0, 1, 0, 0},
jpayne@68 20465 {&__pyx_kp_u_failed_to_flush_HFile, __pyx_k_failed_to_flush_HFile, sizeof(__pyx_k_failed_to_flush_HFile), 0, 1, 0, 0},
jpayne@68 20466 {&__pyx_kp_u_failed_to_open_HFile, __pyx_k_failed_to_open_HFile, sizeof(__pyx_k_failed_to_open_HFile), 0, 1, 0, 0},
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jpayne@68 20468 {&__pyx_kp_u_fd, __pyx_k_fd, sizeof(__pyx_k_fd), 0, 1, 0, 0},
jpayne@68 20469 {&__pyx_n_s_fileno, __pyx_k_fileno, sizeof(__pyx_k_fileno), 0, 0, 1, 1},
jpayne@68 20470 {&__pyx_kp_u_fileno_not_available, __pyx_k_fileno_not_available, sizeof(__pyx_k_fileno_not_available), 0, 1, 0, 0},
jpayne@68 20471 {&__pyx_n_s_flush, __pyx_k_flush, sizeof(__pyx_k_flush), 0, 0, 1, 1},
jpayne@68 20472 {&__pyx_n_s_format, __pyx_k_format, sizeof(__pyx_k_format), 0, 0, 1, 1},
jpayne@68 20473 {&__pyx_n_s_format_option, __pyx_k_format_option, sizeof(__pyx_k_format_option), 0, 0, 1, 1},
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jpayne@68 20475 {&__pyx_n_s_fp, __pyx_k_fp, sizeof(__pyx_k_fp), 0, 0, 1, 1},
jpayne@68 20476 {&__pyx_kp_u_gc, __pyx_k_gc, sizeof(__pyx_k_gc), 0, 1, 0, 0},
jpayne@68 20477 {&__pyx_n_s_get_reference_name, __pyx_k_get_reference_name, sizeof(__pyx_k_get_reference_name), 0, 0, 1, 1},
jpayne@68 20478 {&__pyx_n_s_get_tid, __pyx_k_get_tid, sizeof(__pyx_k_get_tid), 0, 0, 1, 1},
jpayne@68 20479 {&__pyx_n_s_get_verbosity, __pyx_k_get_verbosity, sizeof(__pyx_k_get_verbosity), 0, 0, 1, 1},
jpayne@68 20480 {&__pyx_n_u_get_verbosity, __pyx_k_get_verbosity, sizeof(__pyx_k_get_verbosity), 0, 1, 0, 1},
jpayne@68 20481 {&__pyx_n_s_getstate, __pyx_k_getstate, sizeof(__pyx_k_getstate), 0, 0, 1, 1},
jpayne@68 20482 {&__pyx_n_s_got, __pyx_k_got, sizeof(__pyx_k_got), 0, 0, 1, 1},
jpayne@68 20483 {&__pyx_n_s_ignore_truncation, __pyx_k_ignore_truncation, sizeof(__pyx_k_ignore_truncation), 0, 0, 1, 1},
jpayne@68 20484 {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1},
jpayne@68 20485 {&__pyx_n_s_init, __pyx_k_init, sizeof(__pyx_k_init), 0, 0, 1, 1},
jpayne@68 20486 {&__pyx_n_s_init_subclass, __pyx_k_init_subclass, sizeof(__pyx_k_init_subclass), 0, 0, 1, 1},
jpayne@68 20487 {&__pyx_n_s_initializing, __pyx_k_initializing, sizeof(__pyx_k_initializing), 0, 0, 1, 1},
jpayne@68 20488 {&__pyx_kp_u_invalid_contig_s, __pyx_k_invalid_contig_s, sizeof(__pyx_k_invalid_contig_s), 0, 1, 0, 0},
jpayne@68 20489 {&__pyx_kp_u_invalid_coordinates_start_i_stop, __pyx_k_invalid_coordinates_start_i_stop, sizeof(__pyx_k_invalid_coordinates_start_i_stop), 0, 1, 0, 0},
jpayne@68 20490 {&__pyx_kp_u_invalid_tid, __pyx_k_invalid_tid, sizeof(__pyx_k_invalid_tid), 0, 1, 0, 0},
jpayne@68 20491 {&__pyx_n_s_io, __pyx_k_io, sizeof(__pyx_k_io), 0, 0, 1, 1},
jpayne@68 20492 {&__pyx_n_s_is_coroutine, __pyx_k_is_coroutine, sizeof(__pyx_k_is_coroutine), 0, 0, 1, 1},
jpayne@68 20493 {&__pyx_n_s_is_open, __pyx_k_is_open, sizeof(__pyx_k_is_open), 0, 0, 1, 1},
jpayne@68 20494 {&__pyx_n_s_is_valid_reference_name, __pyx_k_is_valid_reference_name, sizeof(__pyx_k_is_valid_reference_name), 0, 0, 1, 1},
jpayne@68 20495 {&__pyx_n_s_is_valid_tid, __pyx_k_is_valid_tid, sizeof(__pyx_k_is_valid_tid), 0, 0, 1, 1},
jpayne@68 20496 {&__pyx_n_s_isatty, __pyx_k_isatty, sizeof(__pyx_k_isatty), 0, 0, 1, 1},
jpayne@68 20497 {&__pyx_kp_u_isenabled, __pyx_k_isenabled, sizeof(__pyx_k_isenabled), 0, 1, 0, 0},
jpayne@68 20498 {&__pyx_n_s_join, __pyx_k_join, sizeof(__pyx_k_join), 0, 0, 1, 1},
jpayne@68 20499 {&__pyx_n_s_line, __pyx_k_line, sizeof(__pyx_k_line), 0, 0, 1, 1},
jpayne@68 20500 {&__pyx_n_s_lines, __pyx_k_lines, sizeof(__pyx_k_lines), 0, 0, 1, 1},
jpayne@68 20501 {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1},
jpayne@68 20502 {&__pyx_n_s_metaclass, __pyx_k_metaclass, sizeof(__pyx_k_metaclass), 0, 0, 1, 1},
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jpayne@68 20504 {&__pyx_n_s_mode, __pyx_k_mode, sizeof(__pyx_k_mode), 0, 0, 1, 1},
jpayne@68 20505 {&__pyx_n_s_module, __pyx_k_module, sizeof(__pyx_k_module), 0, 0, 1, 1},
jpayne@68 20506 {&__pyx_n_s_mro_entries, __pyx_k_mro_entries, sizeof(__pyx_k_mro_entries), 0, 0, 1, 1},
jpayne@68 20507 {&__pyx_n_s_msg, __pyx_k_msg, sizeof(__pyx_k_msg), 0, 0, 1, 1},
jpayne@68 20508 {&__pyx_n_s_mv, __pyx_k_mv, sizeof(__pyx_k_mv), 0, 0, 1, 1},
jpayne@68 20509 {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1},
jpayne@68 20510 {&__pyx_n_s_name_2, __pyx_k_name_2, sizeof(__pyx_k_name_2), 0, 0, 1, 1},
jpayne@68 20511 {&__pyx_n_s_ne, __pyx_k_ne, sizeof(__pyx_k_ne), 0, 0, 1, 1},
jpayne@68 20512 {&__pyx_kp_u_no_BGZF_EOF_marker_file_may_be_t, __pyx_k_no_BGZF_EOF_marker_file_may_be_t, sizeof(__pyx_k_no_BGZF_EOF_marker_file_may_be_t), 0, 1, 0, 0},
jpayne@68 20513 {&__pyx_kp_s_no_default___reduce___due_to_non, __pyx_k_no_default___reduce___due_to_non, sizeof(__pyx_k_no_default___reduce___due_to_non), 0, 0, 1, 0},
jpayne@68 20514 {&__pyx_n_s_nonzero, __pyx_k_nonzero, sizeof(__pyx_k_nonzero), 0, 0, 1, 1},
jpayne@68 20515 {&__pyx_n_s_object, __pyx_k_object, sizeof(__pyx_k_object), 0, 0, 1, 1},
jpayne@68 20516 {&__pyx_n_s_off, __pyx_k_off, sizeof(__pyx_k_off), 0, 0, 1, 1},
jpayne@68 20517 {&__pyx_n_s_offset, __pyx_k_offset, sizeof(__pyx_k_offset), 0, 0, 1, 1},
jpayne@68 20518 {&__pyx_kp_u_operation_on_closed_HFile, __pyx_k_operation_on_closed_HFile, sizeof(__pyx_k_operation_on_closed_HFile), 0, 1, 0, 0},
jpayne@68 20519 {&__pyx_n_s_opts, __pyx_k_opts, sizeof(__pyx_k_opts), 0, 0, 1, 1},
jpayne@68 20520 {&__pyx_n_s_os, __pyx_k_os, sizeof(__pyx_k_os), 0, 0, 1, 1},
jpayne@68 20521 {&__pyx_n_s_other, __pyx_k_other, sizeof(__pyx_k_other), 0, 0, 1, 1},
jpayne@68 20522 {&__pyx_n_s_parse_region, __pyx_k_parse_region, sizeof(__pyx_k_parse_region), 0, 0, 1, 1},
jpayne@68 20523 {&__pyx_n_s_part, __pyx_k_part, sizeof(__pyx_k_part), 0, 0, 1, 1},
jpayne@68 20524 {&__pyx_n_s_parts, __pyx_k_parts, sizeof(__pyx_k_parts), 0, 0, 1, 1},
jpayne@68 20525 {&__pyx_n_s_prepare, __pyx_k_prepare, sizeof(__pyx_k_prepare), 0, 0, 1, 1},
jpayne@68 20526 {&__pyx_n_s_pysam_libchtslib, __pyx_k_pysam_libchtslib, sizeof(__pyx_k_pysam_libchtslib), 0, 0, 1, 1},
jpayne@68 20527 {&__pyx_kp_s_pysam_libchtslib_pyx, __pyx_k_pysam_libchtslib_pyx, sizeof(__pyx_k_pysam_libchtslib_pyx), 0, 0, 1, 0},
jpayne@68 20528 {&__pyx_n_s_pyx_state, __pyx_k_pyx_state, sizeof(__pyx_k_pyx_state), 0, 0, 1, 1},
jpayne@68 20529 {&__pyx_n_s_pyx_vtable, __pyx_k_pyx_vtable, sizeof(__pyx_k_pyx_vtable), 0, 0, 1, 1},
jpayne@68 20530 {&__pyx_n_s_qualname, __pyx_k_qualname, sizeof(__pyx_k_qualname), 0, 0, 1, 1},
jpayne@68 20531 {&__pyx_n_u_r, __pyx_k_r, sizeof(__pyx_k_r), 0, 1, 0, 1},
jpayne@68 20532 {&__pyx_n_s_re, __pyx_k_re, sizeof(__pyx_k_re), 0, 0, 1, 1},
jpayne@68 20533 {&__pyx_n_s_read, __pyx_k_read, sizeof(__pyx_k_read), 0, 0, 1, 1},
jpayne@68 20534 {&__pyx_n_s_readable, __pyx_k_readable, sizeof(__pyx_k_readable), 0, 0, 1, 1},
jpayne@68 20535 {&__pyx_n_s_readall, __pyx_k_readall, sizeof(__pyx_k_readall), 0, 0, 1, 1},
jpayne@68 20536 {&__pyx_n_s_readinto, __pyx_k_readinto, sizeof(__pyx_k_readinto), 0, 0, 1, 1},
jpayne@68 20537 {&__pyx_n_s_readline, __pyx_k_readline, sizeof(__pyx_k_readline), 0, 0, 1, 1},
jpayne@68 20538 {&__pyx_n_s_readlines, __pyx_k_readlines, sizeof(__pyx_k_readlines), 0, 0, 1, 1},
jpayne@68 20539 {&__pyx_n_s_reduce, __pyx_k_reduce, sizeof(__pyx_k_reduce), 0, 0, 1, 1},
jpayne@68 20540 {&__pyx_n_s_reduce_cython, __pyx_k_reduce_cython, sizeof(__pyx_k_reduce_cython), 0, 0, 1, 1},
jpayne@68 20541 {&__pyx_n_s_reduce_ex, __pyx_k_reduce_ex, sizeof(__pyx_k_reduce_ex), 0, 0, 1, 1},
jpayne@68 20542 {&__pyx_n_s_reference, __pyx_k_reference, sizeof(__pyx_k_reference), 0, 0, 1, 1},
jpayne@68 20543 {&__pyx_n_s_region, __pyx_k_region, sizeof(__pyx_k_region), 0, 0, 1, 1},
jpayne@68 20544 {&__pyx_n_s_replace, __pyx_k_replace, sizeof(__pyx_k_replace), 0, 0, 1, 1},
jpayne@68 20545 {&__pyx_n_s_reset, __pyx_k_reset, sizeof(__pyx_k_reset), 0, 0, 1, 1},
jpayne@68 20546 {&__pyx_n_s_ret, __pyx_k_ret, sizeof(__pyx_k_ret), 0, 0, 1, 1},
jpayne@68 20547 {&__pyx_n_s_rstart, __pyx_k_rstart, sizeof(__pyx_k_rstart), 0, 0, 1, 1},
jpayne@68 20548 {&__pyx_n_s_rstop, __pyx_k_rstop, sizeof(__pyx_k_rstop), 0, 0, 1, 1},
jpayne@68 20549 {&__pyx_n_s_rtid, __pyx_k_rtid, sizeof(__pyx_k_rtid), 0, 0, 1, 1},
jpayne@68 20550 {&__pyx_n_s_rval, __pyx_k_rval, sizeof(__pyx_k_rval), 0, 0, 1, 1},
jpayne@68 20551 {&__pyx_n_s_seek, __pyx_k_seek, sizeof(__pyx_k_seek), 0, 0, 1, 1},
jpayne@68 20552 {&__pyx_kp_u_seek_failed_on_HFile, __pyx_k_seek_failed_on_HFile, sizeof(__pyx_k_seek_failed_on_HFile), 0, 1, 0, 0},
jpayne@68 20553 {&__pyx_kp_u_seek_not_available_in_streams, __pyx_k_seek_not_available_in_streams, sizeof(__pyx_k_seek_not_available_in_streams), 0, 1, 0, 0},
jpayne@68 20554 {&__pyx_kp_u_seek_not_implemented_in_files_co, __pyx_k_seek_not_implemented_in_files_co, sizeof(__pyx_k_seek_not_implemented_in_files_co), 0, 1, 0, 0},
jpayne@68 20555 {&__pyx_n_s_seekable, __pyx_k_seekable, sizeof(__pyx_k_seekable), 0, 0, 1, 1},
jpayne@68 20556 {&__pyx_n_s_self, __pyx_k_self, sizeof(__pyx_k_self), 0, 0, 1, 1},
jpayne@68 20557 {&__pyx_kp_s_self_fp_cannot_be_converted_to_a, __pyx_k_self_fp_cannot_be_converted_to_a, sizeof(__pyx_k_self_fp_cannot_be_converted_to_a), 0, 0, 1, 0},
jpayne@68 20558 {&__pyx_n_s_set_name, __pyx_k_set_name, sizeof(__pyx_k_set_name), 0, 0, 1, 1},
jpayne@68 20559 {&__pyx_n_s_set_verbosity, __pyx_k_set_verbosity, sizeof(__pyx_k_set_verbosity), 0, 0, 1, 1},
jpayne@68 20560 {&__pyx_n_u_set_verbosity, __pyx_k_set_verbosity, sizeof(__pyx_k_set_verbosity), 0, 1, 0, 1},
jpayne@68 20561 {&__pyx_n_s_setstate, __pyx_k_setstate, sizeof(__pyx_k_setstate), 0, 0, 1, 1},
jpayne@68 20562 {&__pyx_n_s_setstate_cython, __pyx_k_setstate_cython, sizeof(__pyx_k_setstate_cython), 0, 0, 1, 1},
jpayne@68 20563 {&__pyx_n_s_size, __pyx_k_size, sizeof(__pyx_k_size), 0, 0, 1, 1},
jpayne@68 20564 {&__pyx_n_s_spec, __pyx_k_spec, sizeof(__pyx_k_spec), 0, 0, 1, 1},
jpayne@68 20565 {&__pyx_n_s_split, __pyx_k_split, sizeof(__pyx_k_split), 0, 0, 1, 1},
jpayne@68 20566 {&__pyx_n_s_start, __pyx_k_start, sizeof(__pyx_k_start), 0, 0, 1, 1},
jpayne@68 20567 {&__pyx_kp_u_start_out_of_range_i, __pyx_k_start_out_of_range_i, sizeof(__pyx_k_start_out_of_range_i), 0, 1, 0, 0},
jpayne@68 20568 {&__pyx_n_s_stop, __pyx_k_stop, sizeof(__pyx_k_stop), 0, 0, 1, 1},
jpayne@68 20569 {&__pyx_kp_u_stop_and_end_should_not_both_be, __pyx_k_stop_and_end_should_not_both_be, sizeof(__pyx_k_stop_and_end_should_not_both_be), 0, 1, 0, 0},
jpayne@68 20570 {&__pyx_kp_u_stop_out_of_range_i, __pyx_k_stop_out_of_range_i, sizeof(__pyx_k_stop_out_of_range_i), 0, 1, 0, 0},
jpayne@68 20571 {&__pyx_kp_s_stringsource, __pyx_k_stringsource, sizeof(__pyx_k_stringsource), 0, 0, 1, 0},
jpayne@68 20572 {&__pyx_n_s_super, __pyx_k_super, sizeof(__pyx_k_super), 0, 0, 1, 1},
jpayne@68 20573 {&__pyx_n_s_tb, __pyx_k_tb, sizeof(__pyx_k_tb), 0, 0, 1, 1},
jpayne@68 20574 {&__pyx_n_s_tell, __pyx_k_tell, sizeof(__pyx_k_tell), 0, 0, 1, 1},
jpayne@68 20575 {&__pyx_kp_u_tell_failed_on_HFile, __pyx_k_tell_failed_on_HFile, sizeof(__pyx_k_tell_failed_on_HFile), 0, 1, 0, 0},
jpayne@68 20576 {&__pyx_kp_u_tell_not_available_in_streams, __pyx_k_tell_not_available_in_streams, sizeof(__pyx_k_tell_not_available_in_streams), 0, 1, 0, 0},
jpayne@68 20577 {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1},
jpayne@68 20578 {&__pyx_n_s_tid, __pyx_k_tid, sizeof(__pyx_k_tid), 0, 0, 1, 1},
jpayne@68 20579 {&__pyx_n_s_traceback, __pyx_k_traceback, sizeof(__pyx_k_traceback), 0, 0, 1, 1},
jpayne@68 20580 {&__pyx_n_s_truncate, __pyx_k_truncate, sizeof(__pyx_k_truncate), 0, 0, 1, 1},
jpayne@68 20581 {&__pyx_n_s_type, __pyx_k_type, sizeof(__pyx_k_type), 0, 0, 1, 1},
jpayne@68 20582 {&__pyx_n_s_value, __pyx_k_value, sizeof(__pyx_k_value), 0, 0, 1, 1},
jpayne@68 20583 {&__pyx_n_s_verbosity, __pyx_k_verbosity, sizeof(__pyx_k_verbosity), 0, 0, 1, 1},
jpayne@68 20584 {&__pyx_n_u_w, __pyx_k_w, sizeof(__pyx_k_w), 0, 1, 0, 1},
jpayne@68 20585 {&__pyx_n_s_warn, __pyx_k_warn, sizeof(__pyx_k_warn), 0, 0, 1, 1},
jpayne@68 20586 {&__pyx_n_s_warnings, __pyx_k_warnings, sizeof(__pyx_k_warnings), 0, 0, 1, 1},
jpayne@68 20587 {&__pyx_n_s_whence, __pyx_k_whence, sizeof(__pyx_k_whence), 0, 0, 1, 1},
jpayne@68 20588 {&__pyx_n_s_writable, __pyx_k_writable, sizeof(__pyx_k_writable), 0, 0, 1, 1},
jpayne@68 20589 {&__pyx_n_s_write, __pyx_k_write, sizeof(__pyx_k_write), 0, 0, 1, 1},
jpayne@68 20590 {&__pyx_kp_u_write_failed_on_HFile, __pyx_k_write_failed_on_HFile, sizeof(__pyx_k_write_failed_on_HFile), 0, 1, 0, 0},
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jpayne@68 20598 __pyx_builtin_object = __Pyx_GetBuiltinName(__pyx_n_s_object); if (!__pyx_builtin_object) __PYX_ERR(0, 297, __pyx_L1_error)
jpayne@68 20599 __pyx_builtin_IOError = __Pyx_GetBuiltinName(__pyx_n_s_IOError); if (!__pyx_builtin_IOError) __PYX_ERR(0, 96, __pyx_L1_error)
jpayne@68 20600 __pyx_builtin_AttributeError = __Pyx_GetBuiltinName(__pyx_n_s_AttributeError); if (!__pyx_builtin_AttributeError) __PYX_ERR(0, 114, __pyx_L1_error)
jpayne@68 20601 __pyx_builtin_StopIteration = __Pyx_GetBuiltinName(__pyx_n_s_StopIteration); if (!__pyx_builtin_StopIteration) __PYX_ERR(0, 128, __pyx_L1_error)
jpayne@68 20602 __pyx_builtin_NotImplementedError = __Pyx_GetBuiltinName(__pyx_n_s_NotImplementedError); if (!__pyx_builtin_NotImplementedError) __PYX_ERR(0, 270, __pyx_L1_error)
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jpayne@68 20604 __pyx_builtin_OSError = __Pyx_GetBuiltinName(__pyx_n_s_OSError); if (!__pyx_builtin_OSError) __PYX_ERR(0, 345, __pyx_L1_error)
jpayne@68 20605 __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(0, 381, __pyx_L1_error)
jpayne@68 20606 __pyx_builtin_RuntimeError = __Pyx_GetBuiltinName(__pyx_n_s_RuntimeError); if (!__pyx_builtin_RuntimeError) __PYX_ERR(0, 587, __pyx_L1_error)
jpayne@68 20607 __pyx_builtin_OverflowError = __Pyx_GetBuiltinName(__pyx_n_s_OverflowError); if (!__pyx_builtin_OverflowError) __PYX_ERR(0, 657, __pyx_L1_error)
jpayne@68 20608 __pyx_builtin_IndexError = __Pyx_GetBuiltinName(__pyx_n_s_IndexError); if (!__pyx_builtin_IndexError) __PYX_ERR(0, 679, __pyx_L1_error)
jpayne@68 20609 __pyx_builtin_MemoryError = __Pyx_GetBuiltinName(__pyx_n_s_MemoryError); if (!__pyx_builtin_MemoryError) __PYX_ERR(3, 120, __pyx_L1_error)
jpayne@68 20610 return 0;
jpayne@68 20611 __pyx_L1_error:;
jpayne@68 20612 return -1;
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jpayne@68 20614 /* #### Code section: cached_constants ### */
jpayne@68 20615
jpayne@68 20616 static CYTHON_SMALL_CODE int __Pyx_InitCachedConstants(void) {
jpayne@68 20617 __Pyx_RefNannyDeclarations
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jpayne@68 20619
jpayne@68 20620 /* "pysam/libchtslib.pyx":110
jpayne@68 20621 * def fileno(self):
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jpayne@68 20624 * if isinstance(self.name, int):
jpayne@68 20625 * return self.name
jpayne@68 20626 */
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jpayne@68 20628 __Pyx_GOTREF(__pyx_tuple__5);
jpayne@68 20629 __Pyx_GIVEREF(__pyx_tuple__5);
jpayne@68 20630
jpayne@68 20631 /* "pysam/libchtslib.pyx":114
jpayne@68 20632 * return self.name
jpayne@68 20633 * else:
jpayne@68 20634 * raise AttributeError('fileno not available') # <<<<<<<<<<<<<<
jpayne@68 20635 *
jpayne@68 20636 * def __enter__(self):
jpayne@68 20637 */
jpayne@68 20638 __pyx_tuple__6 = PyTuple_Pack(1, __pyx_kp_u_fileno_not_available); if (unlikely(!__pyx_tuple__6)) __PYX_ERR(0, 114, __pyx_L1_error)
jpayne@68 20639 __Pyx_GOTREF(__pyx_tuple__6);
jpayne@68 20640 __Pyx_GIVEREF(__pyx_tuple__6);
jpayne@68 20641
jpayne@68 20642 /* "pysam/libchtslib.pyx":381
jpayne@68 20643 * VARIANTS, INDEX, REGIONS"""
jpayne@68 20644 * if not self.htsfile:
jpayne@68 20645 * raise ValueError('metadata not available on closed file') # <<<<<<<<<<<<<<
jpayne@68 20646 * return FORMAT_CATEGORIES[self.htsfile.format.category]
jpayne@68 20647 *
jpayne@68 20648 */
jpayne@68 20649 __pyx_tuple__39 = PyTuple_Pack(1, __pyx_kp_u_metadata_not_available_on_closed); if (unlikely(!__pyx_tuple__39)) __PYX_ERR(0, 381, __pyx_L1_error)
jpayne@68 20650 __Pyx_GOTREF(__pyx_tuple__39);
jpayne@68 20651 __Pyx_GIVEREF(__pyx_tuple__39);
jpayne@68 20652
jpayne@68 20653 /* "pysam/libchtslib.pyx":486
jpayne@68 20654 * """move file pointer to position *offset*, see :meth:`pysam.HTSFile.tell`."""
jpayne@68 20655 * if not self.is_open:
jpayne@68 20656 * raise ValueError('I/O operation on closed file') # <<<<<<<<<<<<<<
jpayne@68 20657 * if self.is_stream:
jpayne@68 20658 * raise IOError('seek not available in streams')
jpayne@68 20659 */
jpayne@68 20660 __pyx_tuple__43 = PyTuple_Pack(1, __pyx_kp_u_I_O_operation_on_closed_file); if (unlikely(!__pyx_tuple__43)) __PYX_ERR(0, 486, __pyx_L1_error)
jpayne@68 20661 __Pyx_GOTREF(__pyx_tuple__43);
jpayne@68 20662 __Pyx_GIVEREF(__pyx_tuple__43);
jpayne@68 20663
jpayne@68 20664 /* "pysam/libchtslib.pyx":488
jpayne@68 20665 * raise ValueError('I/O operation on closed file')
jpayne@68 20666 * if self.is_stream:
jpayne@68 20667 * raise IOError('seek not available in streams') # <<<<<<<<<<<<<<
jpayne@68 20668 *
jpayne@68 20669 * whence = libc_whence_from_io(whence)
jpayne@68 20670 */
jpayne@68 20671 __pyx_tuple__44 = PyTuple_Pack(1, __pyx_kp_u_seek_not_available_in_streams); if (unlikely(!__pyx_tuple__44)) __PYX_ERR(0, 488, __pyx_L1_error)
jpayne@68 20672 __Pyx_GOTREF(__pyx_tuple__44);
jpayne@68 20673 __Pyx_GIVEREF(__pyx_tuple__44);
jpayne@68 20674
jpayne@68 20675 /* "pysam/libchtslib.pyx":508
jpayne@68 20676 * raise ValueError('I/O operation on closed file')
jpayne@68 20677 * if self.is_stream:
jpayne@68 20678 * raise IOError('tell not available in streams') # <<<<<<<<<<<<<<
jpayne@68 20679 *
jpayne@68 20680 * cdef int64_t ret
jpayne@68 20681 */
jpayne@68 20682 __pyx_tuple__46 = PyTuple_Pack(1, __pyx_kp_u_tell_not_available_in_streams); if (unlikely(!__pyx_tuple__46)) __PYX_ERR(0, 508, __pyx_L1_error)
jpayne@68 20683 __Pyx_GOTREF(__pyx_tuple__46);
jpayne@68 20684 __Pyx_GIVEREF(__pyx_tuple__46);
jpayne@68 20685
jpayne@68 20686 /* "pysam/libchtslib.pyx":550
jpayne@68 20687 *
jpayne@68 20688 * # Replicate mode normalization done in hts_open_format
jpayne@68 20689 * smode = self.mode.replace(b'b', b'').replace(b'c', b'') # <<<<<<<<<<<<<<
jpayne@68 20690 * if b'b' in self.mode:
jpayne@68 20691 * smode += b'b'
jpayne@68 20692 */
jpayne@68 20693 __pyx_tuple__47 = PyTuple_Pack(2, __pyx_n_b_b, __pyx_kp_b__13); if (unlikely(!__pyx_tuple__47)) __PYX_ERR(0, 550, __pyx_L1_error)
jpayne@68 20694 __Pyx_GOTREF(__pyx_tuple__47);
jpayne@68 20695 __Pyx_GIVEREF(__pyx_tuple__47);
jpayne@68 20696 __pyx_tuple__48 = PyTuple_Pack(2, __pyx_n_b_c, __pyx_kp_b__13); if (unlikely(!__pyx_tuple__48)) __PYX_ERR(0, 550, __pyx_L1_error)
jpayne@68 20697 __Pyx_GOTREF(__pyx_tuple__48);
jpayne@68 20698 __Pyx_GIVEREF(__pyx_tuple__48);
jpayne@68 20699
jpayne@68 20700 /* "pysam/libchtslib.pyx":559
jpayne@68 20701 * hfile = hdopen(dup_fd, cmode)
jpayne@68 20702 * if hfile == NULL:
jpayne@68 20703 * raise IOError('Cannot create hfile') # <<<<<<<<<<<<<<
jpayne@68 20704 *
jpayne@68 20705 * try:
jpayne@68 20706 */
jpayne@68 20707 __pyx_tuple__49 = PyTuple_Pack(1, __pyx_kp_u_Cannot_create_hfile); if (unlikely(!__pyx_tuple__49)) __PYX_ERR(0, 559, __pyx_L1_error)
jpayne@68 20708 __Pyx_GOTREF(__pyx_tuple__49);
jpayne@68 20709 __Pyx_GIVEREF(__pyx_tuple__49);
jpayne@68 20710
jpayne@68 20711 /* "pysam/libchtslib.pyx":592
jpayne@68 20712 * if rval != 0:
jpayne@68 20713 * hts_opt_free(opts)
jpayne@68 20714 * raise RuntimeError('An error occurred while applying the requested format options') # <<<<<<<<<<<<<<
jpayne@68 20715 * hts_opt_free(opts)
jpayne@68 20716 *
jpayne@68 20717 */
jpayne@68 20718 __pyx_tuple__51 = PyTuple_Pack(1, __pyx_kp_u_An_error_occurred_while_applying); if (unlikely(!__pyx_tuple__51)) __PYX_ERR(0, 592, __pyx_L1_error)
jpayne@68 20719 __Pyx_GOTREF(__pyx_tuple__51);
jpayne@68 20720 __Pyx_GIVEREF(__pyx_tuple__51);
jpayne@68 20721
jpayne@68 20722 /* "pysam/libchtslib.pyx":640
jpayne@68 20723 * if reference is not None:
jpayne@68 20724 * if contig is not None:
jpayne@68 20725 * raise ValueError('contig and reference should not both be specified') # <<<<<<<<<<<<<<
jpayne@68 20726 * contig = reference
jpayne@68 20727 *
jpayne@68 20728 */
jpayne@68 20729 __pyx_tuple__53 = PyTuple_Pack(1, __pyx_kp_u_contig_and_reference_should_not); if (unlikely(!__pyx_tuple__53)) __PYX_ERR(0, 640, __pyx_L1_error)
jpayne@68 20730 __Pyx_GOTREF(__pyx_tuple__53);
jpayne@68 20731 __Pyx_GIVEREF(__pyx_tuple__53);
jpayne@68 20732
jpayne@68 20733 /* "pysam/libchtslib.pyx":645
jpayne@68 20734 * if end is not None:
jpayne@68 20735 * if stop is not None:
jpayne@68 20736 * raise ValueError('stop and end should not both be specified') # <<<<<<<<<<<<<<
jpayne@68 20737 * stop = end
jpayne@68 20738 *
jpayne@68 20739 */
jpayne@68 20740 __pyx_tuple__54 = PyTuple_Pack(1, __pyx_kp_u_stop_and_end_should_not_both_be); if (unlikely(!__pyx_tuple__54)) __PYX_ERR(0, 645, __pyx_L1_error)
jpayne@68 20741 __Pyx_GOTREF(__pyx_tuple__54);
jpayne@68 20742 __Pyx_GIVEREF(__pyx_tuple__54);
jpayne@68 20743
jpayne@68 20744 /* "pysam/libchtslib.pyx":679
jpayne@68 20745 * if tid is not None:
jpayne@68 20746 * if not self.is_valid_tid(tid):
jpayne@68 20747 * raise IndexError('invalid tid') # <<<<<<<<<<<<<<
jpayne@68 20748 * rtid = tid
jpayne@68 20749 * else:
jpayne@68 20750 */
jpayne@68 20751 __pyx_tuple__57 = PyTuple_Pack(1, __pyx_kp_u_invalid_tid); if (unlikely(!__pyx_tuple__57)) __PYX_ERR(0, 679, __pyx_L1_error)
jpayne@68 20752 __Pyx_GOTREF(__pyx_tuple__57);
jpayne@68 20753 __Pyx_GIVEREF(__pyx_tuple__57);
jpayne@68 20754
jpayne@68 20755 /* "pysam/libchtslib.pyx":41
jpayne@68 20756 * cdef int MAX_POS = (1 << 31) - 1
jpayne@68 20757 *
jpayne@68 20758 * cdef tuple FORMAT_CATEGORIES = ('UNKNOWN', 'ALIGNMENTS', 'VARIANTS', 'INDEX', 'REGIONS') # <<<<<<<<<<<<<<
jpayne@68 20759 * cdef tuple FORMATS = ('UNKNOWN', 'BINARY_FORMAT', 'TEXT_FORMAT', 'SAM', 'BAM', 'BAI', 'CRAM', 'CRAI',
jpayne@68 20760 * 'VCF', 'BCF', 'CSI', 'GZI', 'TBI', 'BED')
jpayne@68 20761 */
jpayne@68 20762 __pyx_tuple__66 = PyTuple_Pack(5, __pyx_n_u_UNKNOWN, __pyx_n_u_ALIGNMENTS, __pyx_n_u_VARIANTS, __pyx_n_u_INDEX, __pyx_n_u_REGIONS); if (unlikely(!__pyx_tuple__66)) __PYX_ERR(0, 41, __pyx_L1_error)
jpayne@68 20763 __Pyx_GOTREF(__pyx_tuple__66);
jpayne@68 20764 __Pyx_GIVEREF(__pyx_tuple__66);
jpayne@68 20765
jpayne@68 20766 /* "pysam/libchtslib.pyx":42
jpayne@68 20767 *
jpayne@68 20768 * cdef tuple FORMAT_CATEGORIES = ('UNKNOWN', 'ALIGNMENTS', 'VARIANTS', 'INDEX', 'REGIONS')
jpayne@68 20769 * cdef tuple FORMATS = ('UNKNOWN', 'BINARY_FORMAT', 'TEXT_FORMAT', 'SAM', 'BAM', 'BAI', 'CRAM', 'CRAI', # <<<<<<<<<<<<<<
jpayne@68 20770 * 'VCF', 'BCF', 'CSI', 'GZI', 'TBI', 'BED')
jpayne@68 20771 * cdef tuple COMPRESSION = ('NONE', 'GZIP', 'BGZF', 'CUSTOM')
jpayne@68 20772 */
jpayne@68 20773 __pyx_tuple__67 = PyTuple_Pack(14, __pyx_n_u_UNKNOWN, __pyx_n_u_BINARY_FORMAT, __pyx_n_u_TEXT_FORMAT, __pyx_n_u_SAM, __pyx_n_u_BAM, __pyx_n_u_BAI, __pyx_n_u_CRAM, __pyx_n_u_CRAI, __pyx_n_u_VCF, __pyx_n_u_BCF, __pyx_n_u_CSI, __pyx_n_u_GZI, __pyx_n_u_TBI, __pyx_n_u_BED); if (unlikely(!__pyx_tuple__67)) __PYX_ERR(0, 42, __pyx_L1_error)
jpayne@68 20774 __Pyx_GOTREF(__pyx_tuple__67);
jpayne@68 20775 __Pyx_GIVEREF(__pyx_tuple__67);
jpayne@68 20776
jpayne@68 20777 /* "pysam/libchtslib.pyx":44
jpayne@68 20778 * cdef tuple FORMATS = ('UNKNOWN', 'BINARY_FORMAT', 'TEXT_FORMAT', 'SAM', 'BAM', 'BAI', 'CRAM', 'CRAI',
jpayne@68 20779 * 'VCF', 'BCF', 'CSI', 'GZI', 'TBI', 'BED')
jpayne@68 20780 * cdef tuple COMPRESSION = ('NONE', 'GZIP', 'BGZF', 'CUSTOM') # <<<<<<<<<<<<<<
jpayne@68 20781 *
jpayne@68 20782 *
jpayne@68 20783 */
jpayne@68 20784 __pyx_tuple__68 = PyTuple_Pack(4, __pyx_n_u_NONE, __pyx_n_u_GZIP, __pyx_n_u_BGZF, __pyx_n_u_CUSTOM); if (unlikely(!__pyx_tuple__68)) __PYX_ERR(0, 44, __pyx_L1_error)
jpayne@68 20785 __Pyx_GOTREF(__pyx_tuple__68);
jpayne@68 20786 __Pyx_GIVEREF(__pyx_tuple__68);
jpayne@68 20787
jpayne@68 20788 /* "pysam/libchtslib.pyx":53
jpayne@68 20789 *
jpayne@68 20790 *
jpayne@68 20791 * cpdef set_verbosity(int verbosity): # <<<<<<<<<<<<<<
jpayne@68 20792 * """Set htslib's hts_verbose global variable to the specified value."""
jpayne@68 20793 * return hts_set_verbosity(verbosity)
jpayne@68 20794 */
jpayne@68 20795 __pyx_tuple__69 = PyTuple_Pack(1, __pyx_n_s_verbosity); if (unlikely(!__pyx_tuple__69)) __PYX_ERR(0, 53, __pyx_L1_error)
jpayne@68 20796 __Pyx_GOTREF(__pyx_tuple__69);
jpayne@68 20797 __Pyx_GIVEREF(__pyx_tuple__69);
jpayne@68 20798 __pyx_codeobj_ = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__69, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_set_verbosity, 53, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj_)) __PYX_ERR(0, 53, __pyx_L1_error)
jpayne@68 20799
jpayne@68 20800 /* "pysam/libchtslib.pyx":57
jpayne@68 20801 * return hts_set_verbosity(verbosity)
jpayne@68 20802 *
jpayne@68 20803 * cpdef get_verbosity(): # <<<<<<<<<<<<<<
jpayne@68 20804 * """Return the value of htslib's hts_verbose global variable."""
jpayne@68 20805 * return hts_get_verbosity()
jpayne@68 20806 */
jpayne@68 20807 __pyx_codeobj__2 = (PyObject*)__Pyx_PyCode_New(0, 0, 0, 0, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_get_verbosity, 57, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__2)) __PYX_ERR(0, 57, __pyx_L1_error)
jpayne@68 20808
jpayne@68 20809 /* "pysam/libchtslib.pyx":98
jpayne@68 20810 * raise IOError(errno, 'failed to open HFile', self.name)
jpayne@68 20811 *
jpayne@68 20812 * def close(self): # <<<<<<<<<<<<<<
jpayne@68 20813 * if self.fp == NULL:
jpayne@68 20814 * return
jpayne@68 20815 */
jpayne@68 20816 __pyx_tuple__70 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_fp); if (unlikely(!__pyx_tuple__70)) __PYX_ERR(0, 98, __pyx_L1_error)
jpayne@68 20817 __Pyx_GOTREF(__pyx_tuple__70);
jpayne@68 20818 __Pyx_GIVEREF(__pyx_tuple__70);
jpayne@68 20819 __pyx_codeobj__3 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__70, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_close, 98, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__3)) __PYX_ERR(0, 98, __pyx_L1_error)
jpayne@68 20820
jpayne@68 20821 /* "pysam/libchtslib.pyx":108
jpayne@68 20822 * raise IOError(errno, 'failed to close HFile', self.name)
jpayne@68 20823 *
jpayne@68 20824 * def fileno(self): # <<<<<<<<<<<<<<
jpayne@68 20825 * if self.fp == NULL:
jpayne@68 20826 * raise IOError('operation on closed HFile')
jpayne@68 20827 */
jpayne@68 20828 __pyx_tuple__71 = PyTuple_Pack(1, __pyx_n_s_self); if (unlikely(!__pyx_tuple__71)) __PYX_ERR(0, 108, __pyx_L1_error)
jpayne@68 20829 __Pyx_GOTREF(__pyx_tuple__71);
jpayne@68 20830 __Pyx_GIVEREF(__pyx_tuple__71);
jpayne@68 20831 __pyx_codeobj__4 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_fileno, 108, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__4)) __PYX_ERR(0, 108, __pyx_L1_error)
jpayne@68 20832
jpayne@68 20833 /* "pysam/libchtslib.pyx":116
jpayne@68 20834 * raise AttributeError('fileno not available')
jpayne@68 20835 *
jpayne@68 20836 * def __enter__(self): # <<<<<<<<<<<<<<
jpayne@68 20837 * return self
jpayne@68 20838 *
jpayne@68 20839 */
jpayne@68 20840 __pyx_codeobj__7 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_enter, 116, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__7)) __PYX_ERR(0, 116, __pyx_L1_error)
jpayne@68 20841
jpayne@68 20842 /* "pysam/libchtslib.pyx":119
jpayne@68 20843 * return self
jpayne@68 20844 *
jpayne@68 20845 * def __exit__(self, type, value, tb): # <<<<<<<<<<<<<<
jpayne@68 20846 * self.close()
jpayne@68 20847 *
jpayne@68 20848 */
jpayne@68 20849 __pyx_tuple__72 = PyTuple_Pack(4, __pyx_n_s_self, __pyx_n_s_type, __pyx_n_s_value, __pyx_n_s_tb); if (unlikely(!__pyx_tuple__72)) __PYX_ERR(0, 119, __pyx_L1_error)
jpayne@68 20850 __Pyx_GOTREF(__pyx_tuple__72);
jpayne@68 20851 __Pyx_GIVEREF(__pyx_tuple__72);
jpayne@68 20852 __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(4, 0, 0, 4, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__72, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_exit, 119, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) __PYX_ERR(0, 119, __pyx_L1_error)
jpayne@68 20853
jpayne@68 20854 /* "pysam/libchtslib.pyx":131
jpayne@68 20855 * return line
jpayne@68 20856 *
jpayne@68 20857 * def flush(self): # <<<<<<<<<<<<<<
jpayne@68 20858 * if self.fp == NULL:
jpayne@68 20859 * raise IOError('operation on closed HFile')
jpayne@68 20860 */
jpayne@68 20861 __pyx_codeobj__9 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_flush, 131, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__9)) __PYX_ERR(0, 131, __pyx_L1_error)
jpayne@68 20862
jpayne@68 20863 /* "pysam/libchtslib.pyx":137
jpayne@68 20864 * raise IOError(herrno(self.fp), 'failed to flush HFile', self.name)
jpayne@68 20865 *
jpayne@68 20866 * def isatty(self): # <<<<<<<<<<<<<<
jpayne@68 20867 * if self.fp == NULL:
jpayne@68 20868 * raise IOError('operation on closed HFile')
jpayne@68 20869 */
jpayne@68 20870 __pyx_codeobj__10 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_isatty, 137, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__10)) __PYX_ERR(0, 137, __pyx_L1_error)
jpayne@68 20871
jpayne@68 20872 /* "pysam/libchtslib.pyx":142
jpayne@68 20873 * return False
jpayne@68 20874 *
jpayne@68 20875 * def readable(self): # <<<<<<<<<<<<<<
jpayne@68 20876 * return self.fp != NULL and 'r' in self.mode
jpayne@68 20877 *
jpayne@68 20878 */
jpayne@68 20879 __pyx_codeobj__11 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_readable, 142, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__11)) __PYX_ERR(0, 142, __pyx_L1_error)
jpayne@68 20880
jpayne@68 20881 /* "pysam/libchtslib.pyx":145
jpayne@68 20882 * return self.fp != NULL and 'r' in self.mode
jpayne@68 20883 *
jpayne@68 20884 * def read(self, Py_ssize_t size=-1): # <<<<<<<<<<<<<<
jpayne@68 20885 * if self.fp == NULL:
jpayne@68 20886 * raise IOError('operation on closed HFile')
jpayne@68 20887 */
jpayne@68 20888 __pyx_tuple__73 = PyTuple_Pack(8, __pyx_n_s_self, __pyx_n_s_size, __pyx_n_s_parts, __pyx_n_s_part, __pyx_n_s_chunk_size, __pyx_n_s_ret, __pyx_n_s_bytes_read, __pyx_n_s_cpart); if (unlikely(!__pyx_tuple__73)) __PYX_ERR(0, 145, __pyx_L1_error)
jpayne@68 20889 __Pyx_GOTREF(__pyx_tuple__73);
jpayne@68 20890 __Pyx_GIVEREF(__pyx_tuple__73);
jpayne@68 20891 __pyx_codeobj__12 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 8, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__73, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_read, 145, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__12)) __PYX_ERR(0, 145, __pyx_L1_error)
jpayne@68 20892 __pyx_tuple__74 = PyTuple_Pack(1, __pyx_int_neg_1); if (unlikely(!__pyx_tuple__74)) __PYX_ERR(0, 145, __pyx_L1_error)
jpayne@68 20893 __Pyx_GOTREF(__pyx_tuple__74);
jpayne@68 20894 __Pyx_GIVEREF(__pyx_tuple__74);
jpayne@68 20895
jpayne@68 20896 /* "pysam/libchtslib.pyx":180
jpayne@68 20897 * return b''.join(parts)
jpayne@68 20898 *
jpayne@68 20899 * def readall(self): # <<<<<<<<<<<<<<
jpayne@68 20900 * return self.read()
jpayne@68 20901 *
jpayne@68 20902 */
jpayne@68 20903 __pyx_codeobj__14 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_readall, 180, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__14)) __PYX_ERR(0, 180, __pyx_L1_error)
jpayne@68 20904
jpayne@68 20905 /* "pysam/libchtslib.pyx":183
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jpayne@68 20907 *
jpayne@68 20908 * def readinto(self, buf): # <<<<<<<<<<<<<<
jpayne@68 20909 * if self.fp == NULL:
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jpayne@68 20911 */
jpayne@68 20912 __pyx_tuple__75 = PyTuple_Pack(5, __pyx_n_s_self, __pyx_n_s_buf, __pyx_n_s_size, __pyx_n_s_mv, __pyx_n_s_ret); if (unlikely(!__pyx_tuple__75)) __PYX_ERR(0, 183, __pyx_L1_error)
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jpayne@68 20914 __Pyx_GIVEREF(__pyx_tuple__75);
jpayne@68 20915 __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 5, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__75, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_readinto, 183, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) __PYX_ERR(0, 183, __pyx_L1_error)
jpayne@68 20916
jpayne@68 20917 /* "pysam/libchtslib.pyx":200
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jpayne@68 20919 *
jpayne@68 20920 * def readline(self, Py_ssize_t size=-1): # <<<<<<<<<<<<<<
jpayne@68 20921 * if self.fp == NULL:
jpayne@68 20922 * raise IOError('operation on closed HFile')
jpayne@68 20923 */
jpayne@68 20924 __pyx_codeobj__16 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 8, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__73, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_readline, 200, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__16)) __PYX_ERR(0, 200, __pyx_L1_error)
jpayne@68 20925
jpayne@68 20926 /* "pysam/libchtslib.pyx":241
jpayne@68 20927 * return b''.join(parts)
jpayne@68 20928 *
jpayne@68 20929 * def readlines(self): # <<<<<<<<<<<<<<
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jpayne@68 20931 *
jpayne@68 20932 */
jpayne@68 20933 __pyx_codeobj__17 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_readlines, 241, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__17)) __PYX_ERR(0, 241, __pyx_L1_error)
jpayne@68 20934
jpayne@68 20935 /* "pysam/libchtslib.pyx":244
jpayne@68 20936 * return list(self)
jpayne@68 20937 *
jpayne@68 20938 * def seek(self, Py_ssize_t offset, int whence=io.SEEK_SET): # <<<<<<<<<<<<<<
jpayne@68 20939 * if self.fp == NULL:
jpayne@68 20940 * raise IOError('operation on closed HFile')
jpayne@68 20941 */
jpayne@68 20942 __pyx_tuple__76 = PyTuple_Pack(4, __pyx_n_s_self, __pyx_n_s_offset, __pyx_n_s_whence, __pyx_n_s_off); if (unlikely(!__pyx_tuple__76)) __PYX_ERR(0, 244, __pyx_L1_error)
jpayne@68 20943 __Pyx_GOTREF(__pyx_tuple__76);
jpayne@68 20944 __Pyx_GIVEREF(__pyx_tuple__76);
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jpayne@68 20946
jpayne@68 20947 /* "pysam/libchtslib.pyx":255
jpayne@68 20948 * return off
jpayne@68 20949 *
jpayne@68 20950 * def tell(self): # <<<<<<<<<<<<<<
jpayne@68 20951 * if self.fp == NULL:
jpayne@68 20952 * raise IOError('operation on closed HFile')
jpayne@68 20953 */
jpayne@68 20954 __pyx_tuple__77 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_ret); if (unlikely(!__pyx_tuple__77)) __PYX_ERR(0, 255, __pyx_L1_error)
jpayne@68 20955 __Pyx_GOTREF(__pyx_tuple__77);
jpayne@68 20956 __Pyx_GIVEREF(__pyx_tuple__77);
jpayne@68 20957 __pyx_codeobj__20 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__77, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_tell, 255, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__20)) __PYX_ERR(0, 255, __pyx_L1_error)
jpayne@68 20958
jpayne@68 20959 /* "pysam/libchtslib.pyx":266
jpayne@68 20960 * return ret
jpayne@68 20961 *
jpayne@68 20962 * def seekable(self): # <<<<<<<<<<<<<<
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jpayne@68 20964 *
jpayne@68 20965 */
jpayne@68 20966 __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_seekable, 266, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) __PYX_ERR(0, 266, __pyx_L1_error)
jpayne@68 20967
jpayne@68 20968 /* "pysam/libchtslib.pyx":269
jpayne@68 20969 * return self.fp != NULL
jpayne@68 20970 *
jpayne@68 20971 * def truncate(self, size=None): # <<<<<<<<<<<<<<
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jpayne@68 20973 *
jpayne@68 20974 */
jpayne@68 20975 __pyx_tuple__78 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_size); if (unlikely(!__pyx_tuple__78)) __PYX_ERR(0, 269, __pyx_L1_error)
jpayne@68 20976 __Pyx_GOTREF(__pyx_tuple__78);
jpayne@68 20977 __Pyx_GIVEREF(__pyx_tuple__78);
jpayne@68 20978 __pyx_codeobj__22 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__78, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_truncate, 269, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__22)) __PYX_ERR(0, 269, __pyx_L1_error)
jpayne@68 20979 __pyx_tuple__79 = PyTuple_Pack(1, Py_None); if (unlikely(!__pyx_tuple__79)) __PYX_ERR(0, 269, __pyx_L1_error)
jpayne@68 20980 __Pyx_GOTREF(__pyx_tuple__79);
jpayne@68 20981 __Pyx_GIVEREF(__pyx_tuple__79);
jpayne@68 20982
jpayne@68 20983 /* "pysam/libchtslib.pyx":272
jpayne@68 20984 * raise NotImplementedError()
jpayne@68 20985 *
jpayne@68 20986 * def writable(self): # <<<<<<<<<<<<<<
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jpayne@68 20988 *
jpayne@68 20989 */
jpayne@68 20990 __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_writable, 272, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) __PYX_ERR(0, 272, __pyx_L1_error)
jpayne@68 20991
jpayne@68 20992 /* "pysam/libchtslib.pyx":275
jpayne@68 20993 * return self.fp != NULL and 'w' in self.mode
jpayne@68 20994 *
jpayne@68 20995 * def write(self, bytes b): # <<<<<<<<<<<<<<
jpayne@68 20996 * if self.fp == NULL:
jpayne@68 20997 * raise IOError('operation on closed HFile')
jpayne@68 20998 */
jpayne@68 20999 __pyx_tuple__80 = PyTuple_Pack(3, __pyx_n_s_self, __pyx_n_s_b, __pyx_n_s_got); if (unlikely(!__pyx_tuple__80)) __PYX_ERR(0, 275, __pyx_L1_error)
jpayne@68 21000 __Pyx_GOTREF(__pyx_tuple__80);
jpayne@68 21001 __Pyx_GIVEREF(__pyx_tuple__80);
jpayne@68 21002 __pyx_codeobj__24 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 3, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__80, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_write, 275, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__24)) __PYX_ERR(0, 275, __pyx_L1_error)
jpayne@68 21003
jpayne@68 21004 /* "pysam/libchtslib.pyx":286
jpayne@68 21005 * return got
jpayne@68 21006 *
jpayne@68 21007 * def writelines(self, lines): # <<<<<<<<<<<<<<
jpayne@68 21008 * for line in lines:
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jpayne@68 21010 */
jpayne@68 21011 __pyx_tuple__81 = PyTuple_Pack(3, __pyx_n_s_self, __pyx_n_s_lines, __pyx_n_s_line); if (unlikely(!__pyx_tuple__81)) __PYX_ERR(0, 286, __pyx_L1_error)
jpayne@68 21012 __Pyx_GOTREF(__pyx_tuple__81);
jpayne@68 21013 __Pyx_GIVEREF(__pyx_tuple__81);
jpayne@68 21014 __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 3, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__81, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_writelines, 286, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) __PYX_ERR(0, 286, __pyx_L1_error)
jpayne@68 21015
jpayne@68 21016 /* "(tree fragment)":1
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jpayne@68 21020 */
jpayne@68 21021 __pyx_codeobj__26 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_reduce_cython, 1, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__26)) __PYX_ERR(1, 1, __pyx_L1_error)
jpayne@68 21022
jpayne@68 21023 /* "(tree fragment)":3
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jpayne@68 21025 * raise TypeError, "self.fp cannot be converted to a Python object for pickling"
jpayne@68 21026 * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<<
jpayne@68 21027 * raise TypeError, "self.fp cannot be converted to a Python object for pickling"
jpayne@68 21028 */
jpayne@68 21029 __pyx_tuple__82 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_pyx_state); if (unlikely(!__pyx_tuple__82)) __PYX_ERR(1, 3, __pyx_L1_error)
jpayne@68 21030 __Pyx_GOTREF(__pyx_tuple__82);
jpayne@68 21031 __Pyx_GIVEREF(__pyx_tuple__82);
jpayne@68 21032 __pyx_codeobj__27 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__82, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_setstate_cython, 3, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__27)) __PYX_ERR(1, 3, __pyx_L1_error)
jpayne@68 21033
jpayne@68 21034 /* "pysam/libchtslib.pyx":297
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jpayne@68 21036 *
jpayne@68 21037 * class CallableValue(object): # <<<<<<<<<<<<<<
jpayne@68 21038 * def __init__(self, value):
jpayne@68 21039 * self.value = value
jpayne@68 21040 */
jpayne@68 21041 __pyx_tuple__83 = PyTuple_Pack(1, __pyx_builtin_object); if (unlikely(!__pyx_tuple__83)) __PYX_ERR(0, 297, __pyx_L1_error)
jpayne@68 21042 __Pyx_GOTREF(__pyx_tuple__83);
jpayne@68 21043 __Pyx_GIVEREF(__pyx_tuple__83);
jpayne@68 21044 __pyx_tuple__84 = PyTuple_Pack(1, __pyx_builtin_object); if (unlikely(!__pyx_tuple__84)) __PYX_ERR(0, 297, __pyx_L1_error)
jpayne@68 21045 __Pyx_GOTREF(__pyx_tuple__84);
jpayne@68 21046 __Pyx_GIVEREF(__pyx_tuple__84);
jpayne@68 21047
jpayne@68 21048 /* "pysam/libchtslib.pyx":298
jpayne@68 21049 *
jpayne@68 21050 * class CallableValue(object):
jpayne@68 21051 * def __init__(self, value): # <<<<<<<<<<<<<<
jpayne@68 21052 * self.value = value
jpayne@68 21053 * def __call__(self):
jpayne@68 21054 */
jpayne@68 21055 __pyx_tuple__85 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_value); if (unlikely(!__pyx_tuple__85)) __PYX_ERR(0, 298, __pyx_L1_error)
jpayne@68 21056 __Pyx_GOTREF(__pyx_tuple__85);
jpayne@68 21057 __Pyx_GIVEREF(__pyx_tuple__85);
jpayne@68 21058 __pyx_codeobj__28 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__85, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_init, 298, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__28)) __PYX_ERR(0, 298, __pyx_L1_error)
jpayne@68 21059
jpayne@68 21060 /* "pysam/libchtslib.pyx":300
jpayne@68 21061 * def __init__(self, value):
jpayne@68 21062 * self.value = value
jpayne@68 21063 * def __call__(self): # <<<<<<<<<<<<<<
jpayne@68 21064 * return self.value
jpayne@68 21065 * def __bool__(self):
jpayne@68 21066 */
jpayne@68 21067 __pyx_codeobj__29 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_call, 300, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__29)) __PYX_ERR(0, 300, __pyx_L1_error)
jpayne@68 21068
jpayne@68 21069 /* "pysam/libchtslib.pyx":302
jpayne@68 21070 * def __call__(self):
jpayne@68 21071 * return self.value
jpayne@68 21072 * def __bool__(self): # <<<<<<<<<<<<<<
jpayne@68 21073 * return self.value
jpayne@68 21074 * def __nonzero__(self):
jpayne@68 21075 */
jpayne@68 21076 __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_bool, 302, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) __PYX_ERR(0, 302, __pyx_L1_error)
jpayne@68 21077
jpayne@68 21078 /* "pysam/libchtslib.pyx":304
jpayne@68 21079 * def __bool__(self):
jpayne@68 21080 * return self.value
jpayne@68 21081 * def __nonzero__(self): # <<<<<<<<<<<<<<
jpayne@68 21082 * return self.value
jpayne@68 21083 * def __eq__(self, other):
jpayne@68 21084 */
jpayne@68 21085 __pyx_codeobj__31 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_nonzero, 304, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__31)) __PYX_ERR(0, 304, __pyx_L1_error)
jpayne@68 21086
jpayne@68 21087 /* "pysam/libchtslib.pyx":306
jpayne@68 21088 * def __nonzero__(self):
jpayne@68 21089 * return self.value
jpayne@68 21090 * def __eq__(self, other): # <<<<<<<<<<<<<<
jpayne@68 21091 * return self.value == other
jpayne@68 21092 * def __ne__(self, other):
jpayne@68 21093 */
jpayne@68 21094 __pyx_tuple__86 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_other); if (unlikely(!__pyx_tuple__86)) __PYX_ERR(0, 306, __pyx_L1_error)
jpayne@68 21095 __Pyx_GOTREF(__pyx_tuple__86);
jpayne@68 21096 __Pyx_GIVEREF(__pyx_tuple__86);
jpayne@68 21097 __pyx_codeobj__32 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__86, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_eq, 306, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__32)) __PYX_ERR(0, 306, __pyx_L1_error)
jpayne@68 21098
jpayne@68 21099 /* "pysam/libchtslib.pyx":308
jpayne@68 21100 * def __eq__(self, other):
jpayne@68 21101 * return self.value == other
jpayne@68 21102 * def __ne__(self, other): # <<<<<<<<<<<<<<
jpayne@68 21103 * return self.value != other
jpayne@68 21104 *
jpayne@68 21105 */
jpayne@68 21106 __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(2, 0, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__86, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_ne, 308, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) __PYX_ERR(0, 308, __pyx_L1_error)
jpayne@68 21107
jpayne@68 21108 /* "pysam/libchtslib.pyx":312
jpayne@68 21109 *
jpayne@68 21110 *
jpayne@68 21111 * CTrue = CallableValue(True) # <<<<<<<<<<<<<<
jpayne@68 21112 * CFalse = CallableValue(False)
jpayne@68 21113 *
jpayne@68 21114 */
jpayne@68 21115 __pyx_tuple__87 = PyTuple_Pack(1, Py_True); if (unlikely(!__pyx_tuple__87)) __PYX_ERR(0, 312, __pyx_L1_error)
jpayne@68 21116 __Pyx_GOTREF(__pyx_tuple__87);
jpayne@68 21117 __Pyx_GIVEREF(__pyx_tuple__87);
jpayne@68 21118
jpayne@68 21119 /* "pysam/libchtslib.pyx":313
jpayne@68 21120 *
jpayne@68 21121 * CTrue = CallableValue(True)
jpayne@68 21122 * CFalse = CallableValue(False) # <<<<<<<<<<<<<<
jpayne@68 21123 *
jpayne@68 21124 *
jpayne@68 21125 */
jpayne@68 21126 __pyx_tuple__88 = PyTuple_Pack(1, Py_False); if (unlikely(!__pyx_tuple__88)) __PYX_ERR(0, 313, __pyx_L1_error)
jpayne@68 21127 __Pyx_GOTREF(__pyx_tuple__88);
jpayne@68 21128 __Pyx_GIVEREF(__pyx_tuple__88);
jpayne@68 21129
jpayne@68 21130 /* "pysam/libchtslib.pyx":331
jpayne@68 21131 * self.duplicate_filehandle = True
jpayne@68 21132 *
jpayne@68 21133 * def close(self): # <<<<<<<<<<<<<<
jpayne@68 21134 * if self.htsfile:
jpayne@68 21135 * hts_close(self.htsfile)
jpayne@68 21136 */
jpayne@68 21137 __pyx_codeobj__34 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__71, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_close, 331, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__34)) __PYX_ERR(0, 331, __pyx_L1_error)
jpayne@68 21138
jpayne@68 21139 /* "pysam/libchtslib.pyx":341
jpayne@68 21140 * self.htsfile = NULL
jpayne@68 21141 *
jpayne@68 21142 * def flush(self): # <<<<<<<<<<<<<<
jpayne@68 21143 * """Flush any buffered data to the underlying output stream."""
jpayne@68 21144 * if self.htsfile:
jpayne@68 21145 */
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jpayne@68 21147
jpayne@68 21148 /* "pysam/libchtslib.pyx":347
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jpayne@68 21150 *
jpayne@68 21151 * def check_truncation(self, ignore_truncation=False): # <<<<<<<<<<<<<<
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jpayne@68 21153 * if not self.htsfile:
jpayne@68 21154 */
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jpayne@68 21157 __Pyx_GIVEREF(__pyx_tuple__89);
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jpayne@68 21159
jpayne@68 21160 /* "pysam/libchtslib.pyx":369
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jpayne@68 21162 *
jpayne@68 21163 * def __enter__(self): # <<<<<<<<<<<<<<
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jpayne@68 21165 *
jpayne@68 21166 */
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jpayne@68 21168
jpayne@68 21169 /* "pysam/libchtslib.pyx":372
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jpayne@68 21171 *
jpayne@68 21172 * def __exit__(self, exc_type, exc_value, traceback): # <<<<<<<<<<<<<<
jpayne@68 21173 * self.close()
jpayne@68 21174 * return False
jpayne@68 21175 */
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jpayne@68 21178 __Pyx_GIVEREF(__pyx_tuple__90);
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jpayne@68 21180
jpayne@68 21181 /* "pysam/libchtslib.pyx":472
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jpayne@68 21183 *
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jpayne@68 21186 *
jpayne@68 21187 */
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jpayne@68 21189
jpayne@68 21190 /* "pysam/libchtslib.pyx":483
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jpayne@68 21192 *
jpayne@68 21193 * def seek(self, uint64_t offset, int whence=io.SEEK_SET): # <<<<<<<<<<<<<<
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jpayne@68 21195 * if not self.is_open:
jpayne@68 21196 */
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jpayne@68 21198 __Pyx_GOTREF(__pyx_tuple__91);
jpayne@68 21199 __Pyx_GIVEREF(__pyx_tuple__91);
jpayne@68 21200 __pyx_codeobj__42 = (PyObject*)__Pyx_PyCode_New(3, 0, 0, 4, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__91, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libchtslib_pyx, __pyx_n_s_seek, 483, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__42)) __PYX_ERR(0, 483, __pyx_L1_error)
jpayne@68 21201
jpayne@68 21202 /* "pysam/libchtslib.pyx":503
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jpayne@68 21204 *
jpayne@68 21205 * def tell(self): # <<<<<<<<<<<<<<
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jpayne@68 21207 * if not self.is_open:
jpayne@68 21208 */
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jpayne@68 21210
jpayne@68 21211 /* "pysam/libchtslib.pyx":575
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jpayne@68 21213 *
jpayne@68 21214 * def add_hts_options(self, format_options=None): # <<<<<<<<<<<<<<
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jpayne@68 21217 */
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jpayne@68 21222
jpayne@68 21223 /* "pysam/libchtslib.pyx":595
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jpayne@68 21225 *
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jpayne@68 21228 * reference=None, end=None):
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jpayne@68 21232 __Pyx_GIVEREF(__pyx_tuple__93);
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jpayne@68 21234 __pyx_tuple__94 = PyTuple_Pack(7, Py_None, Py_None, Py_None, Py_None, Py_None, Py_None, Py_None); if (unlikely(!__pyx_tuple__94)) __PYX_ERR(0, 595, __pyx_L1_error)
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jpayne@68 21236 __Pyx_GIVEREF(__pyx_tuple__94);
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jpayne@68 21238 /* "pysam/libchtslib.pyx":700
jpayne@68 21239 * return 1, rtid, rstart, rstop
jpayne@68 21240 *
jpayne@68 21241 * def is_valid_tid(self, tid): # <<<<<<<<<<<<<<
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jpayne@68 21243 * return True if the numerical :term:`tid` is valid; False otherwise.
jpayne@68 21244 */
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jpayne@68 21247 __Pyx_GIVEREF(__pyx_tuple__95);
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jpayne@68 21250 /* "pysam/libchtslib.pyx":708
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jpayne@68 21252 *
jpayne@68 21253 * def is_valid_reference_name(self, contig): # <<<<<<<<<<<<<<
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jpayne@68 21255 * return True if the contig name :term:`contig` is valid; False otherwise.
jpayne@68 21256 */
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jpayne@68 21264 *
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jpayne@68 21268 */
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jpayne@68 21273 *
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jpayne@68 21287 /* "(tree fragment)":3
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jpayne@68 21378 __pyx_ptype_5pysam_10libchtslib_HTSFile->tp_getattro = __Pyx_PyObject_GenericGetAttr;
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jpayne@68 21397 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 21398 #endif
jpayne@68 21399 #if !CYTHON_USE_TYPE_SPECS
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jpayne@68 21405 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 21406 if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_ptype_5pysam_10libchtslib_HFile->tp_dictoffset && __pyx_ptype_5pysam_10libchtslib_HFile->tp_getattro == PyObject_GenericGetAttr)) {
jpayne@68 21407 __pyx_ptype_5pysam_10libchtslib_HFile->tp_getattro = __Pyx_PyObject_GenericGetAttr;
jpayne@68 21408 }
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jpayne@68 21437 sizeof(PyTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(PyTypeObject),
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jpayne@68 21439 sizeof(PyTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_11(PyTypeObject),
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jpayne@68 21464
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jpayne@68 21470 return 0;
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jpayne@68 21472
jpayne@68 21473 static int __Pyx_modinit_function_import_code(void) {
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jpayne@68 21482 __Pyx_GOTREF(__pyx_t_1);
jpayne@68 21483 if (__Pyx_ImportFunction_3_0_11(__pyx_t_1, "libc_whence_from_io", (void (**)(void))&__pyx_f_5pysam_9libcutils_libc_whence_from_io, "int (int)") < 0) __PYX_ERR(0, 1, __pyx_L1_error)
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jpayne@68 21488 if (__Pyx_ImportFunction_3_0_11(__pyx_t_1, "encode_filename", (void (**)(void))&__pyx_f_5pysam_9libcutils_encode_filename, "PyObject *(PyObject *)") < 0) __PYX_ERR(0, 1, __pyx_L1_error)
jpayne@68 21489 if (__Pyx_ImportFunction_3_0_11(__pyx_t_1, "from_string_and_size", (void (**)(void))&__pyx_f_5pysam_9libcutils_from_string_and_size, "PyObject *(char const *, size_t)") < 0) __PYX_ERR(0, 1, __pyx_L1_error)
jpayne@68 21490 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
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jpayne@68 21494 __Pyx_XDECREF(__pyx_t_1);
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jpayne@68 21498
jpayne@68 21499
jpayne@68 21500 #if PY_MAJOR_VERSION >= 3
jpayne@68 21501 #if CYTHON_PEP489_MULTI_PHASE_INIT
jpayne@68 21502 static PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def); /*proto*/
jpayne@68 21503 static int __pyx_pymod_exec_libchtslib(PyObject* module); /*proto*/
jpayne@68 21504 static PyModuleDef_Slot __pyx_moduledef_slots[] = {
jpayne@68 21505 {Py_mod_create, (void*)__pyx_pymod_create},
jpayne@68 21506 {Py_mod_exec, (void*)__pyx_pymod_exec_libchtslib},
jpayne@68 21507 {0, NULL}
jpayne@68 21508 };
jpayne@68 21509 #endif
jpayne@68 21510
jpayne@68 21511 #ifdef __cplusplus
jpayne@68 21512 namespace {
jpayne@68 21513 struct PyModuleDef __pyx_moduledef =
jpayne@68 21514 #else
jpayne@68 21515 static struct PyModuleDef __pyx_moduledef =
jpayne@68 21516 #endif
jpayne@68 21517 {
jpayne@68 21518 PyModuleDef_HEAD_INIT,
jpayne@68 21519 "libchtslib",
jpayne@68 21520 0, /* m_doc */
jpayne@68 21521 #if CYTHON_PEP489_MULTI_PHASE_INIT
jpayne@68 21522 0, /* m_size */
jpayne@68 21523 #elif CYTHON_USE_MODULE_STATE
jpayne@68 21524 sizeof(__pyx_mstate), /* m_size */
jpayne@68 21525 #else
jpayne@68 21526 -1, /* m_size */
jpayne@68 21527 #endif
jpayne@68 21528 __pyx_methods /* m_methods */,
jpayne@68 21529 #if CYTHON_PEP489_MULTI_PHASE_INIT
jpayne@68 21530 __pyx_moduledef_slots, /* m_slots */
jpayne@68 21531 #else
jpayne@68 21532 NULL, /* m_reload */
jpayne@68 21533 #endif
jpayne@68 21534 #if CYTHON_USE_MODULE_STATE
jpayne@68 21535 __pyx_m_traverse, /* m_traverse */
jpayne@68 21536 __pyx_m_clear, /* m_clear */
jpayne@68 21537 NULL /* m_free */
jpayne@68 21538 #else
jpayne@68 21539 NULL, /* m_traverse */
jpayne@68 21540 NULL, /* m_clear */
jpayne@68 21541 NULL /* m_free */
jpayne@68 21542 #endif
jpayne@68 21543 };
jpayne@68 21544 #ifdef __cplusplus
jpayne@68 21545 } /* anonymous namespace */
jpayne@68 21546 #endif
jpayne@68 21547 #endif
jpayne@68 21548
jpayne@68 21549 #ifndef CYTHON_NO_PYINIT_EXPORT
jpayne@68 21550 #define __Pyx_PyMODINIT_FUNC PyMODINIT_FUNC
jpayne@68 21551 #elif PY_MAJOR_VERSION < 3
jpayne@68 21552 #ifdef __cplusplus
jpayne@68 21553 #define __Pyx_PyMODINIT_FUNC extern "C" void
jpayne@68 21554 #else
jpayne@68 21555 #define __Pyx_PyMODINIT_FUNC void
jpayne@68 21556 #endif
jpayne@68 21557 #else
jpayne@68 21558 #ifdef __cplusplus
jpayne@68 21559 #define __Pyx_PyMODINIT_FUNC extern "C" PyObject *
jpayne@68 21560 #else
jpayne@68 21561 #define __Pyx_PyMODINIT_FUNC PyObject *
jpayne@68 21562 #endif
jpayne@68 21563 #endif
jpayne@68 21564
jpayne@68 21565
jpayne@68 21566 #if PY_MAJOR_VERSION < 3
jpayne@68 21567 __Pyx_PyMODINIT_FUNC initlibchtslib(void) CYTHON_SMALL_CODE; /*proto*/
jpayne@68 21568 __Pyx_PyMODINIT_FUNC initlibchtslib(void)
jpayne@68 21569 #else
jpayne@68 21570 __Pyx_PyMODINIT_FUNC PyInit_libchtslib(void) CYTHON_SMALL_CODE; /*proto*/
jpayne@68 21571 __Pyx_PyMODINIT_FUNC PyInit_libchtslib(void)
jpayne@68 21572 #if CYTHON_PEP489_MULTI_PHASE_INIT
jpayne@68 21573 {
jpayne@68 21574 return PyModuleDef_Init(&__pyx_moduledef);
jpayne@68 21575 }
jpayne@68 21576 static CYTHON_SMALL_CODE int __Pyx_check_single_interpreter(void) {
jpayne@68 21577 #if PY_VERSION_HEX >= 0x030700A1
jpayne@68 21578 static PY_INT64_T main_interpreter_id = -1;
jpayne@68 21579 PY_INT64_T current_id = PyInterpreterState_GetID(PyThreadState_Get()->interp);
jpayne@68 21580 if (main_interpreter_id == -1) {
jpayne@68 21581 main_interpreter_id = current_id;
jpayne@68 21582 return (unlikely(current_id == -1)) ? -1 : 0;
jpayne@68 21583 } else if (unlikely(main_interpreter_id != current_id))
jpayne@68 21584 #else
jpayne@68 21585 static PyInterpreterState *main_interpreter = NULL;
jpayne@68 21586 PyInterpreterState *current_interpreter = PyThreadState_Get()->interp;
jpayne@68 21587 if (!main_interpreter) {
jpayne@68 21588 main_interpreter = current_interpreter;
jpayne@68 21589 } else if (unlikely(main_interpreter != current_interpreter))
jpayne@68 21590 #endif
jpayne@68 21591 {
jpayne@68 21592 PyErr_SetString(
jpayne@68 21593 PyExc_ImportError,
jpayne@68 21594 "Interpreter change detected - this module can only be loaded into one interpreter per process.");
jpayne@68 21595 return -1;
jpayne@68 21596 }
jpayne@68 21597 return 0;
jpayne@68 21598 }
jpayne@68 21599 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 21600 static CYTHON_SMALL_CODE int __Pyx_copy_spec_to_module(PyObject *spec, PyObject *module, const char* from_name, const char* to_name, int allow_none)
jpayne@68 21601 #else
jpayne@68 21602 static CYTHON_SMALL_CODE int __Pyx_copy_spec_to_module(PyObject *spec, PyObject *moddict, const char* from_name, const char* to_name, int allow_none)
jpayne@68 21603 #endif
jpayne@68 21604 {
jpayne@68 21605 PyObject *value = PyObject_GetAttrString(spec, from_name);
jpayne@68 21606 int result = 0;
jpayne@68 21607 if (likely(value)) {
jpayne@68 21608 if (allow_none || value != Py_None) {
jpayne@68 21609 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 21610 result = PyModule_AddObject(module, to_name, value);
jpayne@68 21611 #else
jpayne@68 21612 result = PyDict_SetItemString(moddict, to_name, value);
jpayne@68 21613 #endif
jpayne@68 21614 }
jpayne@68 21615 Py_DECREF(value);
jpayne@68 21616 } else if (PyErr_ExceptionMatches(PyExc_AttributeError)) {
jpayne@68 21617 PyErr_Clear();
jpayne@68 21618 } else {
jpayne@68 21619 result = -1;
jpayne@68 21620 }
jpayne@68 21621 return result;
jpayne@68 21622 }
jpayne@68 21623 static CYTHON_SMALL_CODE PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def) {
jpayne@68 21624 PyObject *module = NULL, *moddict, *modname;
jpayne@68 21625 CYTHON_UNUSED_VAR(def);
jpayne@68 21626 if (__Pyx_check_single_interpreter())
jpayne@68 21627 return NULL;
jpayne@68 21628 if (__pyx_m)
jpayne@68 21629 return __Pyx_NewRef(__pyx_m);
jpayne@68 21630 modname = PyObject_GetAttrString(spec, "name");
jpayne@68 21631 if (unlikely(!modname)) goto bad;
jpayne@68 21632 module = PyModule_NewObject(modname);
jpayne@68 21633 Py_DECREF(modname);
jpayne@68 21634 if (unlikely(!module)) goto bad;
jpayne@68 21635 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 21636 moddict = module;
jpayne@68 21637 #else
jpayne@68 21638 moddict = PyModule_GetDict(module);
jpayne@68 21639 if (unlikely(!moddict)) goto bad;
jpayne@68 21640 #endif
jpayne@68 21641 if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "loader", "__loader__", 1) < 0)) goto bad;
jpayne@68 21642 if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "origin", "__file__", 1) < 0)) goto bad;
jpayne@68 21643 if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "parent", "__package__", 1) < 0)) goto bad;
jpayne@68 21644 if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "submodule_search_locations", "__path__", 0) < 0)) goto bad;
jpayne@68 21645 return module;
jpayne@68 21646 bad:
jpayne@68 21647 Py_XDECREF(module);
jpayne@68 21648 return NULL;
jpayne@68 21649 }
jpayne@68 21650
jpayne@68 21651
jpayne@68 21652 static CYTHON_SMALL_CODE int __pyx_pymod_exec_libchtslib(PyObject *__pyx_pyinit_module)
jpayne@68 21653 #endif
jpayne@68 21654 #endif
jpayne@68 21655 {
jpayne@68 21656 int stringtab_initialized = 0;
jpayne@68 21657 #if CYTHON_USE_MODULE_STATE
jpayne@68 21658 int pystate_addmodule_run = 0;
jpayne@68 21659 #endif
jpayne@68 21660 __Pyx_TraceDeclarations
jpayne@68 21661 PyObject *__pyx_t_1 = NULL;
jpayne@68 21662 PyObject *__pyx_t_2 = NULL;
jpayne@68 21663 PyObject *__pyx_t_3 = NULL;
jpayne@68 21664 int __pyx_t_4;
jpayne@68 21665 PyObject *__pyx_t_5 = NULL;
jpayne@68 21666 PyObject *__pyx_t_6 = NULL;
jpayne@68 21667 int __pyx_lineno = 0;
jpayne@68 21668 const char *__pyx_filename = NULL;
jpayne@68 21669 int __pyx_clineno = 0;
jpayne@68 21670 __Pyx_RefNannyDeclarations
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jpayne@68 22077
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jpayne@68 22080 *
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jpayne@68 22090
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jpayne@68 22140
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jpayne@68 22167
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jpayne@68 22674 /* PyErrExceptionMatches */
jpayne@68 22675 #if CYTHON_FAST_THREAD_STATE
jpayne@68 22676 static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
jpayne@68 22677 Py_ssize_t i, n;
jpayne@68 22678 n = PyTuple_GET_SIZE(tuple);
jpayne@68 22679 #if PY_MAJOR_VERSION >= 3
jpayne@68 22680 for (i=0; i<n; i++) {
jpayne@68 22681 if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
jpayne@68 22682 }
jpayne@68 22683 #endif
jpayne@68 22684 for (i=0; i<n; i++) {
jpayne@68 22685 if (__Pyx_PyErr_GivenExceptionMatches(exc_type, PyTuple_GET_ITEM(tuple, i))) return 1;
jpayne@68 22686 }
jpayne@68 22687 return 0;
jpayne@68 22688 }
jpayne@68 22689 static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) {
jpayne@68 22690 int result;
jpayne@68 22691 PyObject *exc_type;
jpayne@68 22692 #if PY_VERSION_HEX >= 0x030C00A6
jpayne@68 22693 PyObject *current_exception = tstate->current_exception;
jpayne@68 22694 if (unlikely(!current_exception)) return 0;
jpayne@68 22695 exc_type = (PyObject*) Py_TYPE(current_exception);
jpayne@68 22696 if (exc_type == err) return 1;
jpayne@68 22697 #else
jpayne@68 22698 exc_type = tstate->curexc_type;
jpayne@68 22699 if (exc_type == err) return 1;
jpayne@68 22700 if (unlikely(!exc_type)) return 0;
jpayne@68 22701 #endif
jpayne@68 22702 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 22703 Py_INCREF(exc_type);
jpayne@68 22704 #endif
jpayne@68 22705 if (unlikely(PyTuple_Check(err))) {
jpayne@68 22706 result = __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err);
jpayne@68 22707 } else {
jpayne@68 22708 result = __Pyx_PyErr_GivenExceptionMatches(exc_type, err);
jpayne@68 22709 }
jpayne@68 22710 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 22711 Py_DECREF(exc_type);
jpayne@68 22712 #endif
jpayne@68 22713 return result;
jpayne@68 22714 }
jpayne@68 22715 #endif
jpayne@68 22716
jpayne@68 22717 /* PyErrFetchRestore */
jpayne@68 22718 #if CYTHON_FAST_THREAD_STATE
jpayne@68 22719 static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
jpayne@68 22720 #if PY_VERSION_HEX >= 0x030C00A6
jpayne@68 22721 PyObject *tmp_value;
jpayne@68 22722 assert(type == NULL || (value != NULL && type == (PyObject*) Py_TYPE(value)));
jpayne@68 22723 if (value) {
jpayne@68 22724 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 22725 if (unlikely(((PyBaseExceptionObject*) value)->traceback != tb))
jpayne@68 22726 #endif
jpayne@68 22727 PyException_SetTraceback(value, tb);
jpayne@68 22728 }
jpayne@68 22729 tmp_value = tstate->current_exception;
jpayne@68 22730 tstate->current_exception = value;
jpayne@68 22731 Py_XDECREF(tmp_value);
jpayne@68 22732 Py_XDECREF(type);
jpayne@68 22733 Py_XDECREF(tb);
jpayne@68 22734 #else
jpayne@68 22735 PyObject *tmp_type, *tmp_value, *tmp_tb;
jpayne@68 22736 tmp_type = tstate->curexc_type;
jpayne@68 22737 tmp_value = tstate->curexc_value;
jpayne@68 22738 tmp_tb = tstate->curexc_traceback;
jpayne@68 22739 tstate->curexc_type = type;
jpayne@68 22740 tstate->curexc_value = value;
jpayne@68 22741 tstate->curexc_traceback = tb;
jpayne@68 22742 Py_XDECREF(tmp_type);
jpayne@68 22743 Py_XDECREF(tmp_value);
jpayne@68 22744 Py_XDECREF(tmp_tb);
jpayne@68 22745 #endif
jpayne@68 22746 }
jpayne@68 22747 static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
jpayne@68 22748 #if PY_VERSION_HEX >= 0x030C00A6
jpayne@68 22749 PyObject* exc_value;
jpayne@68 22750 exc_value = tstate->current_exception;
jpayne@68 22751 tstate->current_exception = 0;
jpayne@68 22752 *value = exc_value;
jpayne@68 22753 *type = NULL;
jpayne@68 22754 *tb = NULL;
jpayne@68 22755 if (exc_value) {
jpayne@68 22756 *type = (PyObject*) Py_TYPE(exc_value);
jpayne@68 22757 Py_INCREF(*type);
jpayne@68 22758 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 22759 *tb = ((PyBaseExceptionObject*) exc_value)->traceback;
jpayne@68 22760 Py_XINCREF(*tb);
jpayne@68 22761 #else
jpayne@68 22762 *tb = PyException_GetTraceback(exc_value);
jpayne@68 22763 #endif
jpayne@68 22764 }
jpayne@68 22765 #else
jpayne@68 22766 *type = tstate->curexc_type;
jpayne@68 22767 *value = tstate->curexc_value;
jpayne@68 22768 *tb = tstate->curexc_traceback;
jpayne@68 22769 tstate->curexc_type = 0;
jpayne@68 22770 tstate->curexc_value = 0;
jpayne@68 22771 tstate->curexc_traceback = 0;
jpayne@68 22772 #endif
jpayne@68 22773 }
jpayne@68 22774 #endif
jpayne@68 22775
jpayne@68 22776 /* PyObjectGetAttrStr */
jpayne@68 22777 #if CYTHON_USE_TYPE_SLOTS
jpayne@68 22778 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) {
jpayne@68 22779 PyTypeObject* tp = Py_TYPE(obj);
jpayne@68 22780 if (likely(tp->tp_getattro))
jpayne@68 22781 return tp->tp_getattro(obj, attr_name);
jpayne@68 22782 #if PY_MAJOR_VERSION < 3
jpayne@68 22783 if (likely(tp->tp_getattr))
jpayne@68 22784 return tp->tp_getattr(obj, PyString_AS_STRING(attr_name));
jpayne@68 22785 #endif
jpayne@68 22786 return PyObject_GetAttr(obj, attr_name);
jpayne@68 22787 }
jpayne@68 22788 #endif
jpayne@68 22789
jpayne@68 22790 /* PyObjectGetAttrStrNoError */
jpayne@68 22791 #if __PYX_LIMITED_VERSION_HEX < 0x030d00A1
jpayne@68 22792 static void __Pyx_PyObject_GetAttrStr_ClearAttributeError(void) {
jpayne@68 22793 __Pyx_PyThreadState_declare
jpayne@68 22794 __Pyx_PyThreadState_assign
jpayne@68 22795 if (likely(__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError)))
jpayne@68 22796 __Pyx_PyErr_Clear();
jpayne@68 22797 }
jpayne@68 22798 #endif
jpayne@68 22799 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name) {
jpayne@68 22800 PyObject *result;
jpayne@68 22801 #if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1
jpayne@68 22802 (void) PyObject_GetOptionalAttr(obj, attr_name, &result);
jpayne@68 22803 return result;
jpayne@68 22804 #else
jpayne@68 22805 #if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_TYPE_SLOTS && PY_VERSION_HEX >= 0x030700B1
jpayne@68 22806 PyTypeObject* tp = Py_TYPE(obj);
jpayne@68 22807 if (likely(tp->tp_getattro == PyObject_GenericGetAttr)) {
jpayne@68 22808 return _PyObject_GenericGetAttrWithDict(obj, attr_name, NULL, 1);
jpayne@68 22809 }
jpayne@68 22810 #endif
jpayne@68 22811 result = __Pyx_PyObject_GetAttrStr(obj, attr_name);
jpayne@68 22812 if (unlikely(!result)) {
jpayne@68 22813 __Pyx_PyObject_GetAttrStr_ClearAttributeError();
jpayne@68 22814 }
jpayne@68 22815 return result;
jpayne@68 22816 #endif
jpayne@68 22817 }
jpayne@68 22818
jpayne@68 22819 /* GetBuiltinName */
jpayne@68 22820 static PyObject *__Pyx_GetBuiltinName(PyObject *name) {
jpayne@68 22821 PyObject* result = __Pyx_PyObject_GetAttrStrNoError(__pyx_b, name);
jpayne@68 22822 if (unlikely(!result) && !PyErr_Occurred()) {
jpayne@68 22823 PyErr_Format(PyExc_NameError,
jpayne@68 22824 #if PY_MAJOR_VERSION >= 3
jpayne@68 22825 "name '%U' is not defined", name);
jpayne@68 22826 #else
jpayne@68 22827 "name '%.200s' is not defined", PyString_AS_STRING(name));
jpayne@68 22828 #endif
jpayne@68 22829 }
jpayne@68 22830 return result;
jpayne@68 22831 }
jpayne@68 22832
jpayne@68 22833 /* TupleAndListFromArray */
jpayne@68 22834 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 22835 static CYTHON_INLINE void __Pyx_copy_object_array(PyObject *const *CYTHON_RESTRICT src, PyObject** CYTHON_RESTRICT dest, Py_ssize_t length) {
jpayne@68 22836 PyObject *v;
jpayne@68 22837 Py_ssize_t i;
jpayne@68 22838 for (i = 0; i < length; i++) {
jpayne@68 22839 v = dest[i] = src[i];
jpayne@68 22840 Py_INCREF(v);
jpayne@68 22841 }
jpayne@68 22842 }
jpayne@68 22843 static CYTHON_INLINE PyObject *
jpayne@68 22844 __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n)
jpayne@68 22845 {
jpayne@68 22846 PyObject *res;
jpayne@68 22847 if (n <= 0) {
jpayne@68 22848 Py_INCREF(__pyx_empty_tuple);
jpayne@68 22849 return __pyx_empty_tuple;
jpayne@68 22850 }
jpayne@68 22851 res = PyTuple_New(n);
jpayne@68 22852 if (unlikely(res == NULL)) return NULL;
jpayne@68 22853 __Pyx_copy_object_array(src, ((PyTupleObject*)res)->ob_item, n);
jpayne@68 22854 return res;
jpayne@68 22855 }
jpayne@68 22856 static CYTHON_INLINE PyObject *
jpayne@68 22857 __Pyx_PyList_FromArray(PyObject *const *src, Py_ssize_t n)
jpayne@68 22858 {
jpayne@68 22859 PyObject *res;
jpayne@68 22860 if (n <= 0) {
jpayne@68 22861 return PyList_New(0);
jpayne@68 22862 }
jpayne@68 22863 res = PyList_New(n);
jpayne@68 22864 if (unlikely(res == NULL)) return NULL;
jpayne@68 22865 __Pyx_copy_object_array(src, ((PyListObject*)res)->ob_item, n);
jpayne@68 22866 return res;
jpayne@68 22867 }
jpayne@68 22868 #endif
jpayne@68 22869
jpayne@68 22870 /* BytesEquals */
jpayne@68 22871 static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
jpayne@68 22872 #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 22873 return PyObject_RichCompareBool(s1, s2, equals);
jpayne@68 22874 #else
jpayne@68 22875 if (s1 == s2) {
jpayne@68 22876 return (equals == Py_EQ);
jpayne@68 22877 } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
jpayne@68 22878 const char *ps1, *ps2;
jpayne@68 22879 Py_ssize_t length = PyBytes_GET_SIZE(s1);
jpayne@68 22880 if (length != PyBytes_GET_SIZE(s2))
jpayne@68 22881 return (equals == Py_NE);
jpayne@68 22882 ps1 = PyBytes_AS_STRING(s1);
jpayne@68 22883 ps2 = PyBytes_AS_STRING(s2);
jpayne@68 22884 if (ps1[0] != ps2[0]) {
jpayne@68 22885 return (equals == Py_NE);
jpayne@68 22886 } else if (length == 1) {
jpayne@68 22887 return (equals == Py_EQ);
jpayne@68 22888 } else {
jpayne@68 22889 int result;
jpayne@68 22890 #if CYTHON_USE_UNICODE_INTERNALS && (PY_VERSION_HEX < 0x030B0000)
jpayne@68 22891 Py_hash_t hash1, hash2;
jpayne@68 22892 hash1 = ((PyBytesObject*)s1)->ob_shash;
jpayne@68 22893 hash2 = ((PyBytesObject*)s2)->ob_shash;
jpayne@68 22894 if (hash1 != hash2 && hash1 != -1 && hash2 != -1) {
jpayne@68 22895 return (equals == Py_NE);
jpayne@68 22896 }
jpayne@68 22897 #endif
jpayne@68 22898 result = memcmp(ps1, ps2, (size_t)length);
jpayne@68 22899 return (equals == Py_EQ) ? (result == 0) : (result != 0);
jpayne@68 22900 }
jpayne@68 22901 } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
jpayne@68 22902 return (equals == Py_NE);
jpayne@68 22903 } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
jpayne@68 22904 return (equals == Py_NE);
jpayne@68 22905 } else {
jpayne@68 22906 int result;
jpayne@68 22907 PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
jpayne@68 22908 if (!py_result)
jpayne@68 22909 return -1;
jpayne@68 22910 result = __Pyx_PyObject_IsTrue(py_result);
jpayne@68 22911 Py_DECREF(py_result);
jpayne@68 22912 return result;
jpayne@68 22913 }
jpayne@68 22914 #endif
jpayne@68 22915 }
jpayne@68 22916
jpayne@68 22917 /* UnicodeEquals */
jpayne@68 22918 static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
jpayne@68 22919 #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 22920 return PyObject_RichCompareBool(s1, s2, equals);
jpayne@68 22921 #else
jpayne@68 22922 #if PY_MAJOR_VERSION < 3
jpayne@68 22923 PyObject* owned_ref = NULL;
jpayne@68 22924 #endif
jpayne@68 22925 int s1_is_unicode, s2_is_unicode;
jpayne@68 22926 if (s1 == s2) {
jpayne@68 22927 goto return_eq;
jpayne@68 22928 }
jpayne@68 22929 s1_is_unicode = PyUnicode_CheckExact(s1);
jpayne@68 22930 s2_is_unicode = PyUnicode_CheckExact(s2);
jpayne@68 22931 #if PY_MAJOR_VERSION < 3
jpayne@68 22932 if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) {
jpayne@68 22933 owned_ref = PyUnicode_FromObject(s2);
jpayne@68 22934 if (unlikely(!owned_ref))
jpayne@68 22935 return -1;
jpayne@68 22936 s2 = owned_ref;
jpayne@68 22937 s2_is_unicode = 1;
jpayne@68 22938 } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) {
jpayne@68 22939 owned_ref = PyUnicode_FromObject(s1);
jpayne@68 22940 if (unlikely(!owned_ref))
jpayne@68 22941 return -1;
jpayne@68 22942 s1 = owned_ref;
jpayne@68 22943 s1_is_unicode = 1;
jpayne@68 22944 } else if (((!s2_is_unicode) & (!s1_is_unicode))) {
jpayne@68 22945 return __Pyx_PyBytes_Equals(s1, s2, equals);
jpayne@68 22946 }
jpayne@68 22947 #endif
jpayne@68 22948 if (s1_is_unicode & s2_is_unicode) {
jpayne@68 22949 Py_ssize_t length;
jpayne@68 22950 int kind;
jpayne@68 22951 void *data1, *data2;
jpayne@68 22952 if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0))
jpayne@68 22953 return -1;
jpayne@68 22954 length = __Pyx_PyUnicode_GET_LENGTH(s1);
jpayne@68 22955 if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) {
jpayne@68 22956 goto return_ne;
jpayne@68 22957 }
jpayne@68 22958 #if CYTHON_USE_UNICODE_INTERNALS
jpayne@68 22959 {
jpayne@68 22960 Py_hash_t hash1, hash2;
jpayne@68 22961 #if CYTHON_PEP393_ENABLED
jpayne@68 22962 hash1 = ((PyASCIIObject*)s1)->hash;
jpayne@68 22963 hash2 = ((PyASCIIObject*)s2)->hash;
jpayne@68 22964 #else
jpayne@68 22965 hash1 = ((PyUnicodeObject*)s1)->hash;
jpayne@68 22966 hash2 = ((PyUnicodeObject*)s2)->hash;
jpayne@68 22967 #endif
jpayne@68 22968 if (hash1 != hash2 && hash1 != -1 && hash2 != -1) {
jpayne@68 22969 goto return_ne;
jpayne@68 22970 }
jpayne@68 22971 }
jpayne@68 22972 #endif
jpayne@68 22973 kind = __Pyx_PyUnicode_KIND(s1);
jpayne@68 22974 if (kind != __Pyx_PyUnicode_KIND(s2)) {
jpayne@68 22975 goto return_ne;
jpayne@68 22976 }
jpayne@68 22977 data1 = __Pyx_PyUnicode_DATA(s1);
jpayne@68 22978 data2 = __Pyx_PyUnicode_DATA(s2);
jpayne@68 22979 if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) {
jpayne@68 22980 goto return_ne;
jpayne@68 22981 } else if (length == 1) {
jpayne@68 22982 goto return_eq;
jpayne@68 22983 } else {
jpayne@68 22984 int result = memcmp(data1, data2, (size_t)(length * kind));
jpayne@68 22985 #if PY_MAJOR_VERSION < 3
jpayne@68 22986 Py_XDECREF(owned_ref);
jpayne@68 22987 #endif
jpayne@68 22988 return (equals == Py_EQ) ? (result == 0) : (result != 0);
jpayne@68 22989 }
jpayne@68 22990 } else if ((s1 == Py_None) & s2_is_unicode) {
jpayne@68 22991 goto return_ne;
jpayne@68 22992 } else if ((s2 == Py_None) & s1_is_unicode) {
jpayne@68 22993 goto return_ne;
jpayne@68 22994 } else {
jpayne@68 22995 int result;
jpayne@68 22996 PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
jpayne@68 22997 #if PY_MAJOR_VERSION < 3
jpayne@68 22998 Py_XDECREF(owned_ref);
jpayne@68 22999 #endif
jpayne@68 23000 if (!py_result)
jpayne@68 23001 return -1;
jpayne@68 23002 result = __Pyx_PyObject_IsTrue(py_result);
jpayne@68 23003 Py_DECREF(py_result);
jpayne@68 23004 return result;
jpayne@68 23005 }
jpayne@68 23006 return_eq:
jpayne@68 23007 #if PY_MAJOR_VERSION < 3
jpayne@68 23008 Py_XDECREF(owned_ref);
jpayne@68 23009 #endif
jpayne@68 23010 return (equals == Py_EQ);
jpayne@68 23011 return_ne:
jpayne@68 23012 #if PY_MAJOR_VERSION < 3
jpayne@68 23013 Py_XDECREF(owned_ref);
jpayne@68 23014 #endif
jpayne@68 23015 return (equals == Py_NE);
jpayne@68 23016 #endif
jpayne@68 23017 }
jpayne@68 23018
jpayne@68 23019 /* fastcall */
jpayne@68 23020 #if CYTHON_METH_FASTCALL
jpayne@68 23021 static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s)
jpayne@68 23022 {
jpayne@68 23023 Py_ssize_t i, n = PyTuple_GET_SIZE(kwnames);
jpayne@68 23024 for (i = 0; i < n; i++)
jpayne@68 23025 {
jpayne@68 23026 if (s == PyTuple_GET_ITEM(kwnames, i)) return kwvalues[i];
jpayne@68 23027 }
jpayne@68 23028 for (i = 0; i < n; i++)
jpayne@68 23029 {
jpayne@68 23030 int eq = __Pyx_PyUnicode_Equals(s, PyTuple_GET_ITEM(kwnames, i), Py_EQ);
jpayne@68 23031 if (unlikely(eq != 0)) {
jpayne@68 23032 if (unlikely(eq < 0)) return NULL;
jpayne@68 23033 return kwvalues[i];
jpayne@68 23034 }
jpayne@68 23035 }
jpayne@68 23036 return NULL;
jpayne@68 23037 }
jpayne@68 23038 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000
jpayne@68 23039 CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues) {
jpayne@68 23040 Py_ssize_t i, nkwargs = PyTuple_GET_SIZE(kwnames);
jpayne@68 23041 PyObject *dict;
jpayne@68 23042 dict = PyDict_New();
jpayne@68 23043 if (unlikely(!dict))
jpayne@68 23044 return NULL;
jpayne@68 23045 for (i=0; i<nkwargs; i++) {
jpayne@68 23046 PyObject *key = PyTuple_GET_ITEM(kwnames, i);
jpayne@68 23047 if (unlikely(PyDict_SetItem(dict, key, kwvalues[i]) < 0))
jpayne@68 23048 goto bad;
jpayne@68 23049 }
jpayne@68 23050 return dict;
jpayne@68 23051 bad:
jpayne@68 23052 Py_DECREF(dict);
jpayne@68 23053 return NULL;
jpayne@68 23054 }
jpayne@68 23055 #endif
jpayne@68 23056 #endif
jpayne@68 23057
jpayne@68 23058 /* Profile */
jpayne@68 23059 #if CYTHON_PROFILE
jpayne@68 23060 static int __Pyx_TraceSetupAndCall(PyCodeObject** code,
jpayne@68 23061 PyFrameObject** frame,
jpayne@68 23062 PyThreadState* tstate,
jpayne@68 23063 const char *funcname,
jpayne@68 23064 const char *srcfile,
jpayne@68 23065 int firstlineno) {
jpayne@68 23066 PyObject *type, *value, *traceback;
jpayne@68 23067 int retval;
jpayne@68 23068 if (*frame == NULL || !CYTHON_PROFILE_REUSE_FRAME) {
jpayne@68 23069 if (*code == NULL) {
jpayne@68 23070 *code = __Pyx_createFrameCodeObject(funcname, srcfile, firstlineno);
jpayne@68 23071 if (*code == NULL) return 0;
jpayne@68 23072 }
jpayne@68 23073 *frame = PyFrame_New(
jpayne@68 23074 tstate, /*PyThreadState *tstate*/
jpayne@68 23075 *code, /*PyCodeObject *code*/
jpayne@68 23076 __pyx_d, /*PyObject *globals*/
jpayne@68 23077 0 /*PyObject *locals*/
jpayne@68 23078 );
jpayne@68 23079 if (*frame == NULL) return 0;
jpayne@68 23080 if (CYTHON_TRACE && (*frame)->f_trace == NULL) {
jpayne@68 23081 Py_INCREF(Py_None);
jpayne@68 23082 (*frame)->f_trace = Py_None;
jpayne@68 23083 }
jpayne@68 23084 #if PY_VERSION_HEX < 0x030400B1
jpayne@68 23085 } else {
jpayne@68 23086 (*frame)->f_tstate = tstate;
jpayne@68 23087 #endif
jpayne@68 23088 }
jpayne@68 23089 __Pyx_PyFrame_SetLineNumber(*frame, firstlineno);
jpayne@68 23090 retval = 1;
jpayne@68 23091 __Pyx_EnterTracing(tstate);
jpayne@68 23092 __Pyx_ErrFetchInState(tstate, &type, &value, &traceback);
jpayne@68 23093 #if CYTHON_TRACE
jpayne@68 23094 if (tstate->c_tracefunc)
jpayne@68 23095 retval = tstate->c_tracefunc(tstate->c_traceobj, *frame, PyTrace_CALL, NULL) == 0;
jpayne@68 23096 if (retval && tstate->c_profilefunc)
jpayne@68 23097 #endif
jpayne@68 23098 retval = tstate->c_profilefunc(tstate->c_profileobj, *frame, PyTrace_CALL, NULL) == 0;
jpayne@68 23099 __Pyx_LeaveTracing(tstate);
jpayne@68 23100 if (retval) {
jpayne@68 23101 __Pyx_ErrRestoreInState(tstate, type, value, traceback);
jpayne@68 23102 return __Pyx_IsTracing(tstate, 0, 0) && retval;
jpayne@68 23103 } else {
jpayne@68 23104 Py_XDECREF(type);
jpayne@68 23105 Py_XDECREF(value);
jpayne@68 23106 Py_XDECREF(traceback);
jpayne@68 23107 return -1;
jpayne@68 23108 }
jpayne@68 23109 }
jpayne@68 23110 static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno) {
jpayne@68 23111 PyCodeObject *py_code = 0;
jpayne@68 23112 #if PY_MAJOR_VERSION >= 3
jpayne@68 23113 py_code = PyCode_NewEmpty(srcfile, funcname, firstlineno);
jpayne@68 23114 if (likely(py_code)) {
jpayne@68 23115 py_code->co_flags |= CO_OPTIMIZED | CO_NEWLOCALS;
jpayne@68 23116 }
jpayne@68 23117 #else
jpayne@68 23118 PyObject *py_srcfile = 0;
jpayne@68 23119 PyObject *py_funcname = 0;
jpayne@68 23120 py_funcname = PyString_FromString(funcname);
jpayne@68 23121 if (unlikely(!py_funcname)) goto bad;
jpayne@68 23122 py_srcfile = PyString_FromString(srcfile);
jpayne@68 23123 if (unlikely(!py_srcfile)) goto bad;
jpayne@68 23124 py_code = PyCode_New(
jpayne@68 23125 0,
jpayne@68 23126 0,
jpayne@68 23127 0,
jpayne@68 23128 CO_OPTIMIZED | CO_NEWLOCALS,
jpayne@68 23129 __pyx_empty_bytes, /*PyObject *code,*/
jpayne@68 23130 __pyx_empty_tuple, /*PyObject *consts,*/
jpayne@68 23131 __pyx_empty_tuple, /*PyObject *names,*/
jpayne@68 23132 __pyx_empty_tuple, /*PyObject *varnames,*/
jpayne@68 23133 __pyx_empty_tuple, /*PyObject *freevars,*/
jpayne@68 23134 __pyx_empty_tuple, /*PyObject *cellvars,*/
jpayne@68 23135 py_srcfile, /*PyObject *filename,*/
jpayne@68 23136 py_funcname, /*PyObject *name,*/
jpayne@68 23137 firstlineno,
jpayne@68 23138 __pyx_empty_bytes /*PyObject *lnotab*/
jpayne@68 23139 );
jpayne@68 23140 bad:
jpayne@68 23141 Py_XDECREF(py_srcfile);
jpayne@68 23142 Py_XDECREF(py_funcname);
jpayne@68 23143 #endif
jpayne@68 23144 return py_code;
jpayne@68 23145 }
jpayne@68 23146 #endif
jpayne@68 23147
jpayne@68 23148 /* RaiseDoubleKeywords */
jpayne@68 23149 static void __Pyx_RaiseDoubleKeywordsError(
jpayne@68 23150 const char* func_name,
jpayne@68 23151 PyObject* kw_name)
jpayne@68 23152 {
jpayne@68 23153 PyErr_Format(PyExc_TypeError,
jpayne@68 23154 #if PY_MAJOR_VERSION >= 3
jpayne@68 23155 "%s() got multiple values for keyword argument '%U'", func_name, kw_name);
jpayne@68 23156 #else
jpayne@68 23157 "%s() got multiple values for keyword argument '%s'", func_name,
jpayne@68 23158 PyString_AsString(kw_name));
jpayne@68 23159 #endif
jpayne@68 23160 }
jpayne@68 23161
jpayne@68 23162 /* ParseKeywords */
jpayne@68 23163 static int __Pyx_ParseOptionalKeywords(
jpayne@68 23164 PyObject *kwds,
jpayne@68 23165 PyObject *const *kwvalues,
jpayne@68 23166 PyObject **argnames[],
jpayne@68 23167 PyObject *kwds2,
jpayne@68 23168 PyObject *values[],
jpayne@68 23169 Py_ssize_t num_pos_args,
jpayne@68 23170 const char* function_name)
jpayne@68 23171 {
jpayne@68 23172 PyObject *key = 0, *value = 0;
jpayne@68 23173 Py_ssize_t pos = 0;
jpayne@68 23174 PyObject*** name;
jpayne@68 23175 PyObject*** first_kw_arg = argnames + num_pos_args;
jpayne@68 23176 int kwds_is_tuple = CYTHON_METH_FASTCALL && likely(PyTuple_Check(kwds));
jpayne@68 23177 while (1) {
jpayne@68 23178 Py_XDECREF(key); key = NULL;
jpayne@68 23179 Py_XDECREF(value); value = NULL;
jpayne@68 23180 if (kwds_is_tuple) {
jpayne@68 23181 Py_ssize_t size;
jpayne@68 23182 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 23183 size = PyTuple_GET_SIZE(kwds);
jpayne@68 23184 #else
jpayne@68 23185 size = PyTuple_Size(kwds);
jpayne@68 23186 if (size < 0) goto bad;
jpayne@68 23187 #endif
jpayne@68 23188 if (pos >= size) break;
jpayne@68 23189 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 23190 key = __Pyx_PySequence_ITEM(kwds, pos);
jpayne@68 23191 if (!key) goto bad;
jpayne@68 23192 #elif CYTHON_ASSUME_SAFE_MACROS
jpayne@68 23193 key = PyTuple_GET_ITEM(kwds, pos);
jpayne@68 23194 #else
jpayne@68 23195 key = PyTuple_GetItem(kwds, pos);
jpayne@68 23196 if (!key) goto bad;
jpayne@68 23197 #endif
jpayne@68 23198 value = kwvalues[pos];
jpayne@68 23199 pos++;
jpayne@68 23200 }
jpayne@68 23201 else
jpayne@68 23202 {
jpayne@68 23203 if (!PyDict_Next(kwds, &pos, &key, &value)) break;
jpayne@68 23204 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 23205 Py_INCREF(key);
jpayne@68 23206 #endif
jpayne@68 23207 }
jpayne@68 23208 name = first_kw_arg;
jpayne@68 23209 while (*name && (**name != key)) name++;
jpayne@68 23210 if (*name) {
jpayne@68 23211 values[name-argnames] = value;
jpayne@68 23212 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 23213 Py_INCREF(value);
jpayne@68 23214 Py_DECREF(key);
jpayne@68 23215 #endif
jpayne@68 23216 key = NULL;
jpayne@68 23217 value = NULL;
jpayne@68 23218 continue;
jpayne@68 23219 }
jpayne@68 23220 #if !CYTHON_AVOID_BORROWED_REFS
jpayne@68 23221 Py_INCREF(key);
jpayne@68 23222 #endif
jpayne@68 23223 Py_INCREF(value);
jpayne@68 23224 name = first_kw_arg;
jpayne@68 23225 #if PY_MAJOR_VERSION < 3
jpayne@68 23226 if (likely(PyString_Check(key))) {
jpayne@68 23227 while (*name) {
jpayne@68 23228 if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key))
jpayne@68 23229 && _PyString_Eq(**name, key)) {
jpayne@68 23230 values[name-argnames] = value;
jpayne@68 23231 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 23232 value = NULL;
jpayne@68 23233 #endif
jpayne@68 23234 break;
jpayne@68 23235 }
jpayne@68 23236 name++;
jpayne@68 23237 }
jpayne@68 23238 if (*name) continue;
jpayne@68 23239 else {
jpayne@68 23240 PyObject*** argname = argnames;
jpayne@68 23241 while (argname != first_kw_arg) {
jpayne@68 23242 if ((**argname == key) || (
jpayne@68 23243 (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key))
jpayne@68 23244 && _PyString_Eq(**argname, key))) {
jpayne@68 23245 goto arg_passed_twice;
jpayne@68 23246 }
jpayne@68 23247 argname++;
jpayne@68 23248 }
jpayne@68 23249 }
jpayne@68 23250 } else
jpayne@68 23251 #endif
jpayne@68 23252 if (likely(PyUnicode_Check(key))) {
jpayne@68 23253 while (*name) {
jpayne@68 23254 int cmp = (
jpayne@68 23255 #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
jpayne@68 23256 (__Pyx_PyUnicode_GET_LENGTH(**name) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 :
jpayne@68 23257 #endif
jpayne@68 23258 PyUnicode_Compare(**name, key)
jpayne@68 23259 );
jpayne@68 23260 if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
jpayne@68 23261 if (cmp == 0) {
jpayne@68 23262 values[name-argnames] = value;
jpayne@68 23263 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 23264 value = NULL;
jpayne@68 23265 #endif
jpayne@68 23266 break;
jpayne@68 23267 }
jpayne@68 23268 name++;
jpayne@68 23269 }
jpayne@68 23270 if (*name) continue;
jpayne@68 23271 else {
jpayne@68 23272 PyObject*** argname = argnames;
jpayne@68 23273 while (argname != first_kw_arg) {
jpayne@68 23274 int cmp = (**argname == key) ? 0 :
jpayne@68 23275 #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
jpayne@68 23276 (__Pyx_PyUnicode_GET_LENGTH(**argname) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 :
jpayne@68 23277 #endif
jpayne@68 23278 PyUnicode_Compare(**argname, key);
jpayne@68 23279 if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
jpayne@68 23280 if (cmp == 0) goto arg_passed_twice;
jpayne@68 23281 argname++;
jpayne@68 23282 }
jpayne@68 23283 }
jpayne@68 23284 } else
jpayne@68 23285 goto invalid_keyword_type;
jpayne@68 23286 if (kwds2) {
jpayne@68 23287 if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
jpayne@68 23288 } else {
jpayne@68 23289 goto invalid_keyword;
jpayne@68 23290 }
jpayne@68 23291 }
jpayne@68 23292 Py_XDECREF(key);
jpayne@68 23293 Py_XDECREF(value);
jpayne@68 23294 return 0;
jpayne@68 23295 arg_passed_twice:
jpayne@68 23296 __Pyx_RaiseDoubleKeywordsError(function_name, key);
jpayne@68 23297 goto bad;
jpayne@68 23298 invalid_keyword_type:
jpayne@68 23299 PyErr_Format(PyExc_TypeError,
jpayne@68 23300 "%.200s() keywords must be strings", function_name);
jpayne@68 23301 goto bad;
jpayne@68 23302 invalid_keyword:
jpayne@68 23303 #if PY_MAJOR_VERSION < 3
jpayne@68 23304 PyErr_Format(PyExc_TypeError,
jpayne@68 23305 "%.200s() got an unexpected keyword argument '%.200s'",
jpayne@68 23306 function_name, PyString_AsString(key));
jpayne@68 23307 #else
jpayne@68 23308 PyErr_Format(PyExc_TypeError,
jpayne@68 23309 "%s() got an unexpected keyword argument '%U'",
jpayne@68 23310 function_name, key);
jpayne@68 23311 #endif
jpayne@68 23312 bad:
jpayne@68 23313 Py_XDECREF(key);
jpayne@68 23314 Py_XDECREF(value);
jpayne@68 23315 return -1;
jpayne@68 23316 }
jpayne@68 23317
jpayne@68 23318 /* RaiseArgTupleInvalid */
jpayne@68 23319 static void __Pyx_RaiseArgtupleInvalid(
jpayne@68 23320 const char* func_name,
jpayne@68 23321 int exact,
jpayne@68 23322 Py_ssize_t num_min,
jpayne@68 23323 Py_ssize_t num_max,
jpayne@68 23324 Py_ssize_t num_found)
jpayne@68 23325 {
jpayne@68 23326 Py_ssize_t num_expected;
jpayne@68 23327 const char *more_or_less;
jpayne@68 23328 if (num_found < num_min) {
jpayne@68 23329 num_expected = num_min;
jpayne@68 23330 more_or_less = "at least";
jpayne@68 23331 } else {
jpayne@68 23332 num_expected = num_max;
jpayne@68 23333 more_or_less = "at most";
jpayne@68 23334 }
jpayne@68 23335 if (exact) {
jpayne@68 23336 more_or_less = "exactly";
jpayne@68 23337 }
jpayne@68 23338 PyErr_Format(PyExc_TypeError,
jpayne@68 23339 "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)",
jpayne@68 23340 func_name, more_or_less, num_expected,
jpayne@68 23341 (num_expected == 1) ? "" : "s", num_found);
jpayne@68 23342 }
jpayne@68 23343
jpayne@68 23344 /* PyFunctionFastCall */
jpayne@68 23345 #if CYTHON_FAST_PYCALL && !CYTHON_VECTORCALL
jpayne@68 23346 static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na,
jpayne@68 23347 PyObject *globals) {
jpayne@68 23348 PyFrameObject *f;
jpayne@68 23349 PyThreadState *tstate = __Pyx_PyThreadState_Current;
jpayne@68 23350 PyObject **fastlocals;
jpayne@68 23351 Py_ssize_t i;
jpayne@68 23352 PyObject *result;
jpayne@68 23353 assert(globals != NULL);
jpayne@68 23354 /* XXX Perhaps we should create a specialized
jpayne@68 23355 PyFrame_New() that doesn't take locals, but does
jpayne@68 23356 take builtins without sanity checking them.
jpayne@68 23357 */
jpayne@68 23358 assert(tstate != NULL);
jpayne@68 23359 f = PyFrame_New(tstate, co, globals, NULL);
jpayne@68 23360 if (f == NULL) {
jpayne@68 23361 return NULL;
jpayne@68 23362 }
jpayne@68 23363 fastlocals = __Pyx_PyFrame_GetLocalsplus(f);
jpayne@68 23364 for (i = 0; i < na; i++) {
jpayne@68 23365 Py_INCREF(*args);
jpayne@68 23366 fastlocals[i] = *args++;
jpayne@68 23367 }
jpayne@68 23368 result = PyEval_EvalFrameEx(f,0);
jpayne@68 23369 ++tstate->recursion_depth;
jpayne@68 23370 Py_DECREF(f);
jpayne@68 23371 --tstate->recursion_depth;
jpayne@68 23372 return result;
jpayne@68 23373 }
jpayne@68 23374 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs) {
jpayne@68 23375 PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func);
jpayne@68 23376 PyObject *globals = PyFunction_GET_GLOBALS(func);
jpayne@68 23377 PyObject *argdefs = PyFunction_GET_DEFAULTS(func);
jpayne@68 23378 PyObject *closure;
jpayne@68 23379 #if PY_MAJOR_VERSION >= 3
jpayne@68 23380 PyObject *kwdefs;
jpayne@68 23381 #endif
jpayne@68 23382 PyObject *kwtuple, **k;
jpayne@68 23383 PyObject **d;
jpayne@68 23384 Py_ssize_t nd;
jpayne@68 23385 Py_ssize_t nk;
jpayne@68 23386 PyObject *result;
jpayne@68 23387 assert(kwargs == NULL || PyDict_Check(kwargs));
jpayne@68 23388 nk = kwargs ? PyDict_Size(kwargs) : 0;
jpayne@68 23389 #if PY_MAJOR_VERSION < 3
jpayne@68 23390 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) {
jpayne@68 23391 return NULL;
jpayne@68 23392 }
jpayne@68 23393 #else
jpayne@68 23394 if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) {
jpayne@68 23395 return NULL;
jpayne@68 23396 }
jpayne@68 23397 #endif
jpayne@68 23398 if (
jpayne@68 23399 #if PY_MAJOR_VERSION >= 3
jpayne@68 23400 co->co_kwonlyargcount == 0 &&
jpayne@68 23401 #endif
jpayne@68 23402 likely(kwargs == NULL || nk == 0) &&
jpayne@68 23403 co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) {
jpayne@68 23404 if (argdefs == NULL && co->co_argcount == nargs) {
jpayne@68 23405 result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals);
jpayne@68 23406 goto done;
jpayne@68 23407 }
jpayne@68 23408 else if (nargs == 0 && argdefs != NULL
jpayne@68 23409 && co->co_argcount == Py_SIZE(argdefs)) {
jpayne@68 23410 /* function called with no arguments, but all parameters have
jpayne@68 23411 a default value: use default values as arguments .*/
jpayne@68 23412 args = &PyTuple_GET_ITEM(argdefs, 0);
jpayne@68 23413 result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals);
jpayne@68 23414 goto done;
jpayne@68 23415 }
jpayne@68 23416 }
jpayne@68 23417 if (kwargs != NULL) {
jpayne@68 23418 Py_ssize_t pos, i;
jpayne@68 23419 kwtuple = PyTuple_New(2 * nk);
jpayne@68 23420 if (kwtuple == NULL) {
jpayne@68 23421 result = NULL;
jpayne@68 23422 goto done;
jpayne@68 23423 }
jpayne@68 23424 k = &PyTuple_GET_ITEM(kwtuple, 0);
jpayne@68 23425 pos = i = 0;
jpayne@68 23426 while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) {
jpayne@68 23427 Py_INCREF(k[i]);
jpayne@68 23428 Py_INCREF(k[i+1]);
jpayne@68 23429 i += 2;
jpayne@68 23430 }
jpayne@68 23431 nk = i / 2;
jpayne@68 23432 }
jpayne@68 23433 else {
jpayne@68 23434 kwtuple = NULL;
jpayne@68 23435 k = NULL;
jpayne@68 23436 }
jpayne@68 23437 closure = PyFunction_GET_CLOSURE(func);
jpayne@68 23438 #if PY_MAJOR_VERSION >= 3
jpayne@68 23439 kwdefs = PyFunction_GET_KW_DEFAULTS(func);
jpayne@68 23440 #endif
jpayne@68 23441 if (argdefs != NULL) {
jpayne@68 23442 d = &PyTuple_GET_ITEM(argdefs, 0);
jpayne@68 23443 nd = Py_SIZE(argdefs);
jpayne@68 23444 }
jpayne@68 23445 else {
jpayne@68 23446 d = NULL;
jpayne@68 23447 nd = 0;
jpayne@68 23448 }
jpayne@68 23449 #if PY_MAJOR_VERSION >= 3
jpayne@68 23450 result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL,
jpayne@68 23451 args, (int)nargs,
jpayne@68 23452 k, (int)nk,
jpayne@68 23453 d, (int)nd, kwdefs, closure);
jpayne@68 23454 #else
jpayne@68 23455 result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL,
jpayne@68 23456 args, (int)nargs,
jpayne@68 23457 k, (int)nk,
jpayne@68 23458 d, (int)nd, closure);
jpayne@68 23459 #endif
jpayne@68 23460 Py_XDECREF(kwtuple);
jpayne@68 23461 done:
jpayne@68 23462 Py_LeaveRecursiveCall();
jpayne@68 23463 return result;
jpayne@68 23464 }
jpayne@68 23465 #endif
jpayne@68 23466
jpayne@68 23467 /* PyObjectCall */
jpayne@68 23468 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 23469 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) {
jpayne@68 23470 PyObject *result;
jpayne@68 23471 ternaryfunc call = Py_TYPE(func)->tp_call;
jpayne@68 23472 if (unlikely(!call))
jpayne@68 23473 return PyObject_Call(func, arg, kw);
jpayne@68 23474 #if PY_MAJOR_VERSION < 3
jpayne@68 23475 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
jpayne@68 23476 return NULL;
jpayne@68 23477 #else
jpayne@68 23478 if (unlikely(Py_EnterRecursiveCall(" while calling a Python object")))
jpayne@68 23479 return NULL;
jpayne@68 23480 #endif
jpayne@68 23481 result = (*call)(func, arg, kw);
jpayne@68 23482 Py_LeaveRecursiveCall();
jpayne@68 23483 if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
jpayne@68 23484 PyErr_SetString(
jpayne@68 23485 PyExc_SystemError,
jpayne@68 23486 "NULL result without error in PyObject_Call");
jpayne@68 23487 }
jpayne@68 23488 return result;
jpayne@68 23489 }
jpayne@68 23490 #endif
jpayne@68 23491
jpayne@68 23492 /* PyObjectCallMethO */
jpayne@68 23493 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 23494 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) {
jpayne@68 23495 PyObject *self, *result;
jpayne@68 23496 PyCFunction cfunc;
jpayne@68 23497 cfunc = __Pyx_CyOrPyCFunction_GET_FUNCTION(func);
jpayne@68 23498 self = __Pyx_CyOrPyCFunction_GET_SELF(func);
jpayne@68 23499 #if PY_MAJOR_VERSION < 3
jpayne@68 23500 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
jpayne@68 23501 return NULL;
jpayne@68 23502 #else
jpayne@68 23503 if (unlikely(Py_EnterRecursiveCall(" while calling a Python object")))
jpayne@68 23504 return NULL;
jpayne@68 23505 #endif
jpayne@68 23506 result = cfunc(self, arg);
jpayne@68 23507 Py_LeaveRecursiveCall();
jpayne@68 23508 if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
jpayne@68 23509 PyErr_SetString(
jpayne@68 23510 PyExc_SystemError,
jpayne@68 23511 "NULL result without error in PyObject_Call");
jpayne@68 23512 }
jpayne@68 23513 return result;
jpayne@68 23514 }
jpayne@68 23515 #endif
jpayne@68 23516
jpayne@68 23517 /* PyObjectFastCall */
jpayne@68 23518 #if PY_VERSION_HEX < 0x03090000 || CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 23519 static PyObject* __Pyx_PyObject_FastCall_fallback(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs) {
jpayne@68 23520 PyObject *argstuple;
jpayne@68 23521 PyObject *result = 0;
jpayne@68 23522 size_t i;
jpayne@68 23523 argstuple = PyTuple_New((Py_ssize_t)nargs);
jpayne@68 23524 if (unlikely(!argstuple)) return NULL;
jpayne@68 23525 for (i = 0; i < nargs; i++) {
jpayne@68 23526 Py_INCREF(args[i]);
jpayne@68 23527 if (__Pyx_PyTuple_SET_ITEM(argstuple, (Py_ssize_t)i, args[i]) < 0) goto bad;
jpayne@68 23528 }
jpayne@68 23529 result = __Pyx_PyObject_Call(func, argstuple, kwargs);
jpayne@68 23530 bad:
jpayne@68 23531 Py_DECREF(argstuple);
jpayne@68 23532 return result;
jpayne@68 23533 }
jpayne@68 23534 #endif
jpayne@68 23535 static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t _nargs, PyObject *kwargs) {
jpayne@68 23536 Py_ssize_t nargs = __Pyx_PyVectorcall_NARGS(_nargs);
jpayne@68 23537 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 23538 if (nargs == 0 && kwargs == NULL) {
jpayne@68 23539 if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_NOARGS))
jpayne@68 23540 return __Pyx_PyObject_CallMethO(func, NULL);
jpayne@68 23541 }
jpayne@68 23542 else if (nargs == 1 && kwargs == NULL) {
jpayne@68 23543 if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_O))
jpayne@68 23544 return __Pyx_PyObject_CallMethO(func, args[0]);
jpayne@68 23545 }
jpayne@68 23546 #endif
jpayne@68 23547 #if PY_VERSION_HEX < 0x030800B1
jpayne@68 23548 #if CYTHON_FAST_PYCCALL
jpayne@68 23549 if (PyCFunction_Check(func)) {
jpayne@68 23550 if (kwargs) {
jpayne@68 23551 return _PyCFunction_FastCallDict(func, args, nargs, kwargs);
jpayne@68 23552 } else {
jpayne@68 23553 return _PyCFunction_FastCallKeywords(func, args, nargs, NULL);
jpayne@68 23554 }
jpayne@68 23555 }
jpayne@68 23556 #if PY_VERSION_HEX >= 0x030700A1
jpayne@68 23557 if (!kwargs && __Pyx_IS_TYPE(func, &PyMethodDescr_Type)) {
jpayne@68 23558 return _PyMethodDescr_FastCallKeywords(func, args, nargs, NULL);
jpayne@68 23559 }
jpayne@68 23560 #endif
jpayne@68 23561 #endif
jpayne@68 23562 #if CYTHON_FAST_PYCALL
jpayne@68 23563 if (PyFunction_Check(func)) {
jpayne@68 23564 return __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs);
jpayne@68 23565 }
jpayne@68 23566 #endif
jpayne@68 23567 #endif
jpayne@68 23568 if (kwargs == NULL) {
jpayne@68 23569 #if CYTHON_VECTORCALL
jpayne@68 23570 #if PY_VERSION_HEX < 0x03090000
jpayne@68 23571 vectorcallfunc f = _PyVectorcall_Function(func);
jpayne@68 23572 #else
jpayne@68 23573 vectorcallfunc f = PyVectorcall_Function(func);
jpayne@68 23574 #endif
jpayne@68 23575 if (f) {
jpayne@68 23576 return f(func, args, (size_t)nargs, NULL);
jpayne@68 23577 }
jpayne@68 23578 #elif defined(__Pyx_CyFunction_USED) && CYTHON_BACKPORT_VECTORCALL
jpayne@68 23579 if (__Pyx_CyFunction_CheckExact(func)) {
jpayne@68 23580 __pyx_vectorcallfunc f = __Pyx_CyFunction_func_vectorcall(func);
jpayne@68 23581 if (f) return f(func, args, (size_t)nargs, NULL);
jpayne@68 23582 }
jpayne@68 23583 #endif
jpayne@68 23584 }
jpayne@68 23585 if (nargs == 0) {
jpayne@68 23586 return __Pyx_PyObject_Call(func, __pyx_empty_tuple, kwargs);
jpayne@68 23587 }
jpayne@68 23588 #if PY_VERSION_HEX >= 0x03090000 && !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 23589 return PyObject_VectorcallDict(func, args, (size_t)nargs, kwargs);
jpayne@68 23590 #else
jpayne@68 23591 return __Pyx_PyObject_FastCall_fallback(func, args, (size_t)nargs, kwargs);
jpayne@68 23592 #endif
jpayne@68 23593 }
jpayne@68 23594
jpayne@68 23595 /* WriteUnraisableException */
jpayne@68 23596 static void __Pyx_WriteUnraisable(const char *name, int clineno,
jpayne@68 23597 int lineno, const char *filename,
jpayne@68 23598 int full_traceback, int nogil) {
jpayne@68 23599 PyObject *old_exc, *old_val, *old_tb;
jpayne@68 23600 PyObject *ctx;
jpayne@68 23601 __Pyx_PyThreadState_declare
jpayne@68 23602 #ifdef WITH_THREAD
jpayne@68 23603 PyGILState_STATE state;
jpayne@68 23604 if (nogil)
jpayne@68 23605 state = PyGILState_Ensure();
jpayne@68 23606 else state = (PyGILState_STATE)0;
jpayne@68 23607 #endif
jpayne@68 23608 CYTHON_UNUSED_VAR(clineno);
jpayne@68 23609 CYTHON_UNUSED_VAR(lineno);
jpayne@68 23610 CYTHON_UNUSED_VAR(filename);
jpayne@68 23611 CYTHON_MAYBE_UNUSED_VAR(nogil);
jpayne@68 23612 __Pyx_PyThreadState_assign
jpayne@68 23613 __Pyx_ErrFetch(&old_exc, &old_val, &old_tb);
jpayne@68 23614 if (full_traceback) {
jpayne@68 23615 Py_XINCREF(old_exc);
jpayne@68 23616 Py_XINCREF(old_val);
jpayne@68 23617 Py_XINCREF(old_tb);
jpayne@68 23618 __Pyx_ErrRestore(old_exc, old_val, old_tb);
jpayne@68 23619 PyErr_PrintEx(0);
jpayne@68 23620 }
jpayne@68 23621 #if PY_MAJOR_VERSION < 3
jpayne@68 23622 ctx = PyString_FromString(name);
jpayne@68 23623 #else
jpayne@68 23624 ctx = PyUnicode_FromString(name);
jpayne@68 23625 #endif
jpayne@68 23626 __Pyx_ErrRestore(old_exc, old_val, old_tb);
jpayne@68 23627 if (!ctx) {
jpayne@68 23628 PyErr_WriteUnraisable(Py_None);
jpayne@68 23629 } else {
jpayne@68 23630 PyErr_WriteUnraisable(ctx);
jpayne@68 23631 Py_DECREF(ctx);
jpayne@68 23632 }
jpayne@68 23633 #ifdef WITH_THREAD
jpayne@68 23634 if (nogil)
jpayne@68 23635 PyGILState_Release(state);
jpayne@68 23636 #endif
jpayne@68 23637 }
jpayne@68 23638
jpayne@68 23639 /* RaiseException */
jpayne@68 23640 #if PY_MAJOR_VERSION < 3
jpayne@68 23641 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
jpayne@68 23642 __Pyx_PyThreadState_declare
jpayne@68 23643 CYTHON_UNUSED_VAR(cause);
jpayne@68 23644 Py_XINCREF(type);
jpayne@68 23645 if (!value || value == Py_None)
jpayne@68 23646 value = NULL;
jpayne@68 23647 else
jpayne@68 23648 Py_INCREF(value);
jpayne@68 23649 if (!tb || tb == Py_None)
jpayne@68 23650 tb = NULL;
jpayne@68 23651 else {
jpayne@68 23652 Py_INCREF(tb);
jpayne@68 23653 if (!PyTraceBack_Check(tb)) {
jpayne@68 23654 PyErr_SetString(PyExc_TypeError,
jpayne@68 23655 "raise: arg 3 must be a traceback or None");
jpayne@68 23656 goto raise_error;
jpayne@68 23657 }
jpayne@68 23658 }
jpayne@68 23659 if (PyType_Check(type)) {
jpayne@68 23660 #if CYTHON_COMPILING_IN_PYPY
jpayne@68 23661 if (!value) {
jpayne@68 23662 Py_INCREF(Py_None);
jpayne@68 23663 value = Py_None;
jpayne@68 23664 }
jpayne@68 23665 #endif
jpayne@68 23666 PyErr_NormalizeException(&type, &value, &tb);
jpayne@68 23667 } else {
jpayne@68 23668 if (value) {
jpayne@68 23669 PyErr_SetString(PyExc_TypeError,
jpayne@68 23670 "instance exception may not have a separate value");
jpayne@68 23671 goto raise_error;
jpayne@68 23672 }
jpayne@68 23673 value = type;
jpayne@68 23674 type = (PyObject*) Py_TYPE(type);
jpayne@68 23675 Py_INCREF(type);
jpayne@68 23676 if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
jpayne@68 23677 PyErr_SetString(PyExc_TypeError,
jpayne@68 23678 "raise: exception class must be a subclass of BaseException");
jpayne@68 23679 goto raise_error;
jpayne@68 23680 }
jpayne@68 23681 }
jpayne@68 23682 __Pyx_PyThreadState_assign
jpayne@68 23683 __Pyx_ErrRestore(type, value, tb);
jpayne@68 23684 return;
jpayne@68 23685 raise_error:
jpayne@68 23686 Py_XDECREF(value);
jpayne@68 23687 Py_XDECREF(type);
jpayne@68 23688 Py_XDECREF(tb);
jpayne@68 23689 return;
jpayne@68 23690 }
jpayne@68 23691 #else
jpayne@68 23692 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
jpayne@68 23693 PyObject* owned_instance = NULL;
jpayne@68 23694 if (tb == Py_None) {
jpayne@68 23695 tb = 0;
jpayne@68 23696 } else if (tb && !PyTraceBack_Check(tb)) {
jpayne@68 23697 PyErr_SetString(PyExc_TypeError,
jpayne@68 23698 "raise: arg 3 must be a traceback or None");
jpayne@68 23699 goto bad;
jpayne@68 23700 }
jpayne@68 23701 if (value == Py_None)
jpayne@68 23702 value = 0;
jpayne@68 23703 if (PyExceptionInstance_Check(type)) {
jpayne@68 23704 if (value) {
jpayne@68 23705 PyErr_SetString(PyExc_TypeError,
jpayne@68 23706 "instance exception may not have a separate value");
jpayne@68 23707 goto bad;
jpayne@68 23708 }
jpayne@68 23709 value = type;
jpayne@68 23710 type = (PyObject*) Py_TYPE(value);
jpayne@68 23711 } else if (PyExceptionClass_Check(type)) {
jpayne@68 23712 PyObject *instance_class = NULL;
jpayne@68 23713 if (value && PyExceptionInstance_Check(value)) {
jpayne@68 23714 instance_class = (PyObject*) Py_TYPE(value);
jpayne@68 23715 if (instance_class != type) {
jpayne@68 23716 int is_subclass = PyObject_IsSubclass(instance_class, type);
jpayne@68 23717 if (!is_subclass) {
jpayne@68 23718 instance_class = NULL;
jpayne@68 23719 } else if (unlikely(is_subclass == -1)) {
jpayne@68 23720 goto bad;
jpayne@68 23721 } else {
jpayne@68 23722 type = instance_class;
jpayne@68 23723 }
jpayne@68 23724 }
jpayne@68 23725 }
jpayne@68 23726 if (!instance_class) {
jpayne@68 23727 PyObject *args;
jpayne@68 23728 if (!value)
jpayne@68 23729 args = PyTuple_New(0);
jpayne@68 23730 else if (PyTuple_Check(value)) {
jpayne@68 23731 Py_INCREF(value);
jpayne@68 23732 args = value;
jpayne@68 23733 } else
jpayne@68 23734 args = PyTuple_Pack(1, value);
jpayne@68 23735 if (!args)
jpayne@68 23736 goto bad;
jpayne@68 23737 owned_instance = PyObject_Call(type, args, NULL);
jpayne@68 23738 Py_DECREF(args);
jpayne@68 23739 if (!owned_instance)
jpayne@68 23740 goto bad;
jpayne@68 23741 value = owned_instance;
jpayne@68 23742 if (!PyExceptionInstance_Check(value)) {
jpayne@68 23743 PyErr_Format(PyExc_TypeError,
jpayne@68 23744 "calling %R should have returned an instance of "
jpayne@68 23745 "BaseException, not %R",
jpayne@68 23746 type, Py_TYPE(value));
jpayne@68 23747 goto bad;
jpayne@68 23748 }
jpayne@68 23749 }
jpayne@68 23750 } else {
jpayne@68 23751 PyErr_SetString(PyExc_TypeError,
jpayne@68 23752 "raise: exception class must be a subclass of BaseException");
jpayne@68 23753 goto bad;
jpayne@68 23754 }
jpayne@68 23755 if (cause) {
jpayne@68 23756 PyObject *fixed_cause;
jpayne@68 23757 if (cause == Py_None) {
jpayne@68 23758 fixed_cause = NULL;
jpayne@68 23759 } else if (PyExceptionClass_Check(cause)) {
jpayne@68 23760 fixed_cause = PyObject_CallObject(cause, NULL);
jpayne@68 23761 if (fixed_cause == NULL)
jpayne@68 23762 goto bad;
jpayne@68 23763 } else if (PyExceptionInstance_Check(cause)) {
jpayne@68 23764 fixed_cause = cause;
jpayne@68 23765 Py_INCREF(fixed_cause);
jpayne@68 23766 } else {
jpayne@68 23767 PyErr_SetString(PyExc_TypeError,
jpayne@68 23768 "exception causes must derive from "
jpayne@68 23769 "BaseException");
jpayne@68 23770 goto bad;
jpayne@68 23771 }
jpayne@68 23772 PyException_SetCause(value, fixed_cause);
jpayne@68 23773 }
jpayne@68 23774 PyErr_SetObject(type, value);
jpayne@68 23775 if (tb) {
jpayne@68 23776 #if PY_VERSION_HEX >= 0x030C00A6
jpayne@68 23777 PyException_SetTraceback(value, tb);
jpayne@68 23778 #elif CYTHON_FAST_THREAD_STATE
jpayne@68 23779 PyThreadState *tstate = __Pyx_PyThreadState_Current;
jpayne@68 23780 PyObject* tmp_tb = tstate->curexc_traceback;
jpayne@68 23781 if (tb != tmp_tb) {
jpayne@68 23782 Py_INCREF(tb);
jpayne@68 23783 tstate->curexc_traceback = tb;
jpayne@68 23784 Py_XDECREF(tmp_tb);
jpayne@68 23785 }
jpayne@68 23786 #else
jpayne@68 23787 PyObject *tmp_type, *tmp_value, *tmp_tb;
jpayne@68 23788 PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb);
jpayne@68 23789 Py_INCREF(tb);
jpayne@68 23790 PyErr_Restore(tmp_type, tmp_value, tb);
jpayne@68 23791 Py_XDECREF(tmp_tb);
jpayne@68 23792 #endif
jpayne@68 23793 }
jpayne@68 23794 bad:
jpayne@68 23795 Py_XDECREF(owned_instance);
jpayne@68 23796 return;
jpayne@68 23797 }
jpayne@68 23798 #endif
jpayne@68 23799
jpayne@68 23800 /* KeywordStringCheck */
jpayne@68 23801 static int __Pyx_CheckKeywordStrings(
jpayne@68 23802 PyObject *kw,
jpayne@68 23803 const char* function_name,
jpayne@68 23804 int kw_allowed)
jpayne@68 23805 {
jpayne@68 23806 PyObject* key = 0;
jpayne@68 23807 Py_ssize_t pos = 0;
jpayne@68 23808 #if CYTHON_COMPILING_IN_PYPY
jpayne@68 23809 if (!kw_allowed && PyDict_Next(kw, &pos, &key, 0))
jpayne@68 23810 goto invalid_keyword;
jpayne@68 23811 return 1;
jpayne@68 23812 #else
jpayne@68 23813 if (CYTHON_METH_FASTCALL && likely(PyTuple_Check(kw))) {
jpayne@68 23814 Py_ssize_t kwsize;
jpayne@68 23815 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 23816 kwsize = PyTuple_GET_SIZE(kw);
jpayne@68 23817 #else
jpayne@68 23818 kwsize = PyTuple_Size(kw);
jpayne@68 23819 if (kwsize < 0) return 0;
jpayne@68 23820 #endif
jpayne@68 23821 if (unlikely(kwsize == 0))
jpayne@68 23822 return 1;
jpayne@68 23823 if (!kw_allowed) {
jpayne@68 23824 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 23825 key = PyTuple_GET_ITEM(kw, 0);
jpayne@68 23826 #else
jpayne@68 23827 key = PyTuple_GetItem(kw, pos);
jpayne@68 23828 if (!key) return 0;
jpayne@68 23829 #endif
jpayne@68 23830 goto invalid_keyword;
jpayne@68 23831 }
jpayne@68 23832 #if PY_VERSION_HEX < 0x03090000
jpayne@68 23833 for (pos = 0; pos < kwsize; pos++) {
jpayne@68 23834 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 23835 key = PyTuple_GET_ITEM(kw, pos);
jpayne@68 23836 #else
jpayne@68 23837 key = PyTuple_GetItem(kw, pos);
jpayne@68 23838 if (!key) return 0;
jpayne@68 23839 #endif
jpayne@68 23840 if (unlikely(!PyUnicode_Check(key)))
jpayne@68 23841 goto invalid_keyword_type;
jpayne@68 23842 }
jpayne@68 23843 #endif
jpayne@68 23844 return 1;
jpayne@68 23845 }
jpayne@68 23846 while (PyDict_Next(kw, &pos, &key, 0)) {
jpayne@68 23847 #if PY_MAJOR_VERSION < 3
jpayne@68 23848 if (unlikely(!PyString_Check(key)))
jpayne@68 23849 #endif
jpayne@68 23850 if (unlikely(!PyUnicode_Check(key)))
jpayne@68 23851 goto invalid_keyword_type;
jpayne@68 23852 }
jpayne@68 23853 if (!kw_allowed && unlikely(key))
jpayne@68 23854 goto invalid_keyword;
jpayne@68 23855 return 1;
jpayne@68 23856 invalid_keyword_type:
jpayne@68 23857 PyErr_Format(PyExc_TypeError,
jpayne@68 23858 "%.200s() keywords must be strings", function_name);
jpayne@68 23859 return 0;
jpayne@68 23860 #endif
jpayne@68 23861 invalid_keyword:
jpayne@68 23862 #if PY_MAJOR_VERSION < 3
jpayne@68 23863 PyErr_Format(PyExc_TypeError,
jpayne@68 23864 "%.200s() got an unexpected keyword argument '%.200s'",
jpayne@68 23865 function_name, PyString_AsString(key));
jpayne@68 23866 #else
jpayne@68 23867 PyErr_Format(PyExc_TypeError,
jpayne@68 23868 "%s() got an unexpected keyword argument '%U'",
jpayne@68 23869 function_name, key);
jpayne@68 23870 #endif
jpayne@68 23871 return 0;
jpayne@68 23872 }
jpayne@68 23873
jpayne@68 23874 /* PyObjectCall2Args */
jpayne@68 23875 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) {
jpayne@68 23876 PyObject *args[3] = {NULL, arg1, arg2};
jpayne@68 23877 return __Pyx_PyObject_FastCall(function, args+1, 2 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET);
jpayne@68 23878 }
jpayne@68 23879
jpayne@68 23880 /* PyObjectCallOneArg */
jpayne@68 23881 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
jpayne@68 23882 PyObject *args[2] = {NULL, arg};
jpayne@68 23883 return __Pyx_PyObject_FastCall(func, args+1, 1 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET);
jpayne@68 23884 }
jpayne@68 23885
jpayne@68 23886 /* PyObjectGetMethod */
jpayne@68 23887 static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method) {
jpayne@68 23888 PyObject *attr;
jpayne@68 23889 #if CYTHON_UNPACK_METHODS && CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_PYTYPE_LOOKUP
jpayne@68 23890 __Pyx_TypeName type_name;
jpayne@68 23891 PyTypeObject *tp = Py_TYPE(obj);
jpayne@68 23892 PyObject *descr;
jpayne@68 23893 descrgetfunc f = NULL;
jpayne@68 23894 PyObject **dictptr, *dict;
jpayne@68 23895 int meth_found = 0;
jpayne@68 23896 assert (*method == NULL);
jpayne@68 23897 if (unlikely(tp->tp_getattro != PyObject_GenericGetAttr)) {
jpayne@68 23898 attr = __Pyx_PyObject_GetAttrStr(obj, name);
jpayne@68 23899 goto try_unpack;
jpayne@68 23900 }
jpayne@68 23901 if (unlikely(tp->tp_dict == NULL) && unlikely(PyType_Ready(tp) < 0)) {
jpayne@68 23902 return 0;
jpayne@68 23903 }
jpayne@68 23904 descr = _PyType_Lookup(tp, name);
jpayne@68 23905 if (likely(descr != NULL)) {
jpayne@68 23906 Py_INCREF(descr);
jpayne@68 23907 #if defined(Py_TPFLAGS_METHOD_DESCRIPTOR) && Py_TPFLAGS_METHOD_DESCRIPTOR
jpayne@68 23908 if (__Pyx_PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_METHOD_DESCRIPTOR))
jpayne@68 23909 #elif PY_MAJOR_VERSION >= 3
jpayne@68 23910 #ifdef __Pyx_CyFunction_USED
jpayne@68 23911 if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type) || __Pyx_CyFunction_Check(descr)))
jpayne@68 23912 #else
jpayne@68 23913 if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type)))
jpayne@68 23914 #endif
jpayne@68 23915 #else
jpayne@68 23916 #ifdef __Pyx_CyFunction_USED
jpayne@68 23917 if (likely(PyFunction_Check(descr) || __Pyx_CyFunction_Check(descr)))
jpayne@68 23918 #else
jpayne@68 23919 if (likely(PyFunction_Check(descr)))
jpayne@68 23920 #endif
jpayne@68 23921 #endif
jpayne@68 23922 {
jpayne@68 23923 meth_found = 1;
jpayne@68 23924 } else {
jpayne@68 23925 f = Py_TYPE(descr)->tp_descr_get;
jpayne@68 23926 if (f != NULL && PyDescr_IsData(descr)) {
jpayne@68 23927 attr = f(descr, obj, (PyObject *)Py_TYPE(obj));
jpayne@68 23928 Py_DECREF(descr);
jpayne@68 23929 goto try_unpack;
jpayne@68 23930 }
jpayne@68 23931 }
jpayne@68 23932 }
jpayne@68 23933 dictptr = _PyObject_GetDictPtr(obj);
jpayne@68 23934 if (dictptr != NULL && (dict = *dictptr) != NULL) {
jpayne@68 23935 Py_INCREF(dict);
jpayne@68 23936 attr = __Pyx_PyDict_GetItemStr(dict, name);
jpayne@68 23937 if (attr != NULL) {
jpayne@68 23938 Py_INCREF(attr);
jpayne@68 23939 Py_DECREF(dict);
jpayne@68 23940 Py_XDECREF(descr);
jpayne@68 23941 goto try_unpack;
jpayne@68 23942 }
jpayne@68 23943 Py_DECREF(dict);
jpayne@68 23944 }
jpayne@68 23945 if (meth_found) {
jpayne@68 23946 *method = descr;
jpayne@68 23947 return 1;
jpayne@68 23948 }
jpayne@68 23949 if (f != NULL) {
jpayne@68 23950 attr = f(descr, obj, (PyObject *)Py_TYPE(obj));
jpayne@68 23951 Py_DECREF(descr);
jpayne@68 23952 goto try_unpack;
jpayne@68 23953 }
jpayne@68 23954 if (likely(descr != NULL)) {
jpayne@68 23955 *method = descr;
jpayne@68 23956 return 0;
jpayne@68 23957 }
jpayne@68 23958 type_name = __Pyx_PyType_GetName(tp);
jpayne@68 23959 PyErr_Format(PyExc_AttributeError,
jpayne@68 23960 #if PY_MAJOR_VERSION >= 3
jpayne@68 23961 "'" __Pyx_FMT_TYPENAME "' object has no attribute '%U'",
jpayne@68 23962 type_name, name);
jpayne@68 23963 #else
jpayne@68 23964 "'" __Pyx_FMT_TYPENAME "' object has no attribute '%.400s'",
jpayne@68 23965 type_name, PyString_AS_STRING(name));
jpayne@68 23966 #endif
jpayne@68 23967 __Pyx_DECREF_TypeName(type_name);
jpayne@68 23968 return 0;
jpayne@68 23969 #else
jpayne@68 23970 attr = __Pyx_PyObject_GetAttrStr(obj, name);
jpayne@68 23971 goto try_unpack;
jpayne@68 23972 #endif
jpayne@68 23973 try_unpack:
jpayne@68 23974 #if CYTHON_UNPACK_METHODS
jpayne@68 23975 if (likely(attr) && PyMethod_Check(attr) && likely(PyMethod_GET_SELF(attr) == obj)) {
jpayne@68 23976 PyObject *function = PyMethod_GET_FUNCTION(attr);
jpayne@68 23977 Py_INCREF(function);
jpayne@68 23978 Py_DECREF(attr);
jpayne@68 23979 *method = function;
jpayne@68 23980 return 1;
jpayne@68 23981 }
jpayne@68 23982 #endif
jpayne@68 23983 *method = attr;
jpayne@68 23984 return 0;
jpayne@68 23985 }
jpayne@68 23986
jpayne@68 23987 /* PyObjectCallMethod1 */
jpayne@68 23988 #if !(CYTHON_VECTORCALL && __PYX_LIMITED_VERSION_HEX >= 0x030C00A2)
jpayne@68 23989 static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg) {
jpayne@68 23990 PyObject *result = __Pyx_PyObject_CallOneArg(method, arg);
jpayne@68 23991 Py_DECREF(method);
jpayne@68 23992 return result;
jpayne@68 23993 }
jpayne@68 23994 #endif
jpayne@68 23995 static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) {
jpayne@68 23996 #if CYTHON_VECTORCALL && __PYX_LIMITED_VERSION_HEX >= 0x030C00A2
jpayne@68 23997 PyObject *args[2] = {obj, arg};
jpayne@68 23998 (void) __Pyx_PyObject_GetMethod;
jpayne@68 23999 (void) __Pyx_PyObject_CallOneArg;
jpayne@68 24000 (void) __Pyx_PyObject_Call2Args;
jpayne@68 24001 return PyObject_VectorcallMethod(method_name, args, 2 | PY_VECTORCALL_ARGUMENTS_OFFSET, NULL);
jpayne@68 24002 #else
jpayne@68 24003 PyObject *method = NULL, *result;
jpayne@68 24004 int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method);
jpayne@68 24005 if (likely(is_method)) {
jpayne@68 24006 result = __Pyx_PyObject_Call2Args(method, obj, arg);
jpayne@68 24007 Py_DECREF(method);
jpayne@68 24008 return result;
jpayne@68 24009 }
jpayne@68 24010 if (unlikely(!method)) return NULL;
jpayne@68 24011 return __Pyx__PyObject_CallMethod1(method, arg);
jpayne@68 24012 #endif
jpayne@68 24013 }
jpayne@68 24014
jpayne@68 24015 /* StringJoin */
jpayne@68 24016 static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values) {
jpayne@68 24017 (void) __Pyx_PyObject_CallMethod1;
jpayne@68 24018 #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION < 3
jpayne@68 24019 return _PyString_Join(sep, values);
jpayne@68 24020 #elif CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000
jpayne@68 24021 return _PyBytes_Join(sep, values);
jpayne@68 24022 #else
jpayne@68 24023 return __Pyx_PyObject_CallMethod1(sep, __pyx_n_s_join, values);
jpayne@68 24024 #endif
jpayne@68 24025 }
jpayne@68 24026
jpayne@68 24027 /* PyObjectCallNoArg */
jpayne@68 24028 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) {
jpayne@68 24029 PyObject *arg[2] = {NULL, NULL};
jpayne@68 24030 return __Pyx_PyObject_FastCall(func, arg + 1, 0 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET);
jpayne@68 24031 }
jpayne@68 24032
jpayne@68 24033 /* ArgTypeTest */
jpayne@68 24034 static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact)
jpayne@68 24035 {
jpayne@68 24036 __Pyx_TypeName type_name;
jpayne@68 24037 __Pyx_TypeName obj_type_name;
jpayne@68 24038 if (unlikely(!type)) {
jpayne@68 24039 PyErr_SetString(PyExc_SystemError, "Missing type object");
jpayne@68 24040 return 0;
jpayne@68 24041 }
jpayne@68 24042 else if (exact) {
jpayne@68 24043 #if PY_MAJOR_VERSION == 2
jpayne@68 24044 if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1;
jpayne@68 24045 #endif
jpayne@68 24046 }
jpayne@68 24047 else {
jpayne@68 24048 if (likely(__Pyx_TypeCheck(obj, type))) return 1;
jpayne@68 24049 }
jpayne@68 24050 type_name = __Pyx_PyType_GetName(type);
jpayne@68 24051 obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj));
jpayne@68 24052 PyErr_Format(PyExc_TypeError,
jpayne@68 24053 "Argument '%.200s' has incorrect type (expected " __Pyx_FMT_TYPENAME
jpayne@68 24054 ", got " __Pyx_FMT_TYPENAME ")", name, type_name, obj_type_name);
jpayne@68 24055 __Pyx_DECREF_TypeName(type_name);
jpayne@68 24056 __Pyx_DECREF_TypeName(obj_type_name);
jpayne@68 24057 return 0;
jpayne@68 24058 }
jpayne@68 24059
jpayne@68 24060 /* PyObjectSetAttrStr */
jpayne@68 24061 #if CYTHON_USE_TYPE_SLOTS
jpayne@68 24062 static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) {
jpayne@68 24063 PyTypeObject* tp = Py_TYPE(obj);
jpayne@68 24064 if (likely(tp->tp_setattro))
jpayne@68 24065 return tp->tp_setattro(obj, attr_name, value);
jpayne@68 24066 #if PY_MAJOR_VERSION < 3
jpayne@68 24067 if (likely(tp->tp_setattr))
jpayne@68 24068 return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value);
jpayne@68 24069 #endif
jpayne@68 24070 return PyObject_SetAttr(obj, attr_name, value);
jpayne@68 24071 }
jpayne@68 24072 #endif
jpayne@68 24073
jpayne@68 24074 /* JoinPyUnicode */
jpayne@68 24075 static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_count, Py_ssize_t result_ulength,
jpayne@68 24076 Py_UCS4 max_char) {
jpayne@68 24077 #if CYTHON_USE_UNICODE_INTERNALS && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
jpayne@68 24078 PyObject *result_uval;
jpayne@68 24079 int result_ukind, kind_shift;
jpayne@68 24080 Py_ssize_t i, char_pos;
jpayne@68 24081 void *result_udata;
jpayne@68 24082 CYTHON_MAYBE_UNUSED_VAR(max_char);
jpayne@68 24083 #if CYTHON_PEP393_ENABLED
jpayne@68 24084 result_uval = PyUnicode_New(result_ulength, max_char);
jpayne@68 24085 if (unlikely(!result_uval)) return NULL;
jpayne@68 24086 result_ukind = (max_char <= 255) ? PyUnicode_1BYTE_KIND : (max_char <= 65535) ? PyUnicode_2BYTE_KIND : PyUnicode_4BYTE_KIND;
jpayne@68 24087 kind_shift = (result_ukind == PyUnicode_4BYTE_KIND) ? 2 : result_ukind - 1;
jpayne@68 24088 result_udata = PyUnicode_DATA(result_uval);
jpayne@68 24089 #else
jpayne@68 24090 result_uval = PyUnicode_FromUnicode(NULL, result_ulength);
jpayne@68 24091 if (unlikely(!result_uval)) return NULL;
jpayne@68 24092 result_ukind = sizeof(Py_UNICODE);
jpayne@68 24093 kind_shift = (result_ukind == 4) ? 2 : result_ukind - 1;
jpayne@68 24094 result_udata = PyUnicode_AS_UNICODE(result_uval);
jpayne@68 24095 #endif
jpayne@68 24096 assert(kind_shift == 2 || kind_shift == 1 || kind_shift == 0);
jpayne@68 24097 char_pos = 0;
jpayne@68 24098 for (i=0; i < value_count; i++) {
jpayne@68 24099 int ukind;
jpayne@68 24100 Py_ssize_t ulength;
jpayne@68 24101 void *udata;
jpayne@68 24102 PyObject *uval = PyTuple_GET_ITEM(value_tuple, i);
jpayne@68 24103 if (unlikely(__Pyx_PyUnicode_READY(uval)))
jpayne@68 24104 goto bad;
jpayne@68 24105 ulength = __Pyx_PyUnicode_GET_LENGTH(uval);
jpayne@68 24106 if (unlikely(!ulength))
jpayne@68 24107 continue;
jpayne@68 24108 if (unlikely((PY_SSIZE_T_MAX >> kind_shift) - ulength < char_pos))
jpayne@68 24109 goto overflow;
jpayne@68 24110 ukind = __Pyx_PyUnicode_KIND(uval);
jpayne@68 24111 udata = __Pyx_PyUnicode_DATA(uval);
jpayne@68 24112 if (!CYTHON_PEP393_ENABLED || ukind == result_ukind) {
jpayne@68 24113 memcpy((char *)result_udata + (char_pos << kind_shift), udata, (size_t) (ulength << kind_shift));
jpayne@68 24114 } else {
jpayne@68 24115 #if PY_VERSION_HEX >= 0x030d0000
jpayne@68 24116 if (unlikely(PyUnicode_CopyCharacters(result_uval, char_pos, uval, 0, ulength) < 0)) goto bad;
jpayne@68 24117 #elif CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030300F0 || defined(_PyUnicode_FastCopyCharacters)
jpayne@68 24118 _PyUnicode_FastCopyCharacters(result_uval, char_pos, uval, 0, ulength);
jpayne@68 24119 #else
jpayne@68 24120 Py_ssize_t j;
jpayne@68 24121 for (j=0; j < ulength; j++) {
jpayne@68 24122 Py_UCS4 uchar = __Pyx_PyUnicode_READ(ukind, udata, j);
jpayne@68 24123 __Pyx_PyUnicode_WRITE(result_ukind, result_udata, char_pos+j, uchar);
jpayne@68 24124 }
jpayne@68 24125 #endif
jpayne@68 24126 }
jpayne@68 24127 char_pos += ulength;
jpayne@68 24128 }
jpayne@68 24129 return result_uval;
jpayne@68 24130 overflow:
jpayne@68 24131 PyErr_SetString(PyExc_OverflowError, "join() result is too long for a Python string");
jpayne@68 24132 bad:
jpayne@68 24133 Py_DECREF(result_uval);
jpayne@68 24134 return NULL;
jpayne@68 24135 #else
jpayne@68 24136 CYTHON_UNUSED_VAR(max_char);
jpayne@68 24137 CYTHON_UNUSED_VAR(result_ulength);
jpayne@68 24138 CYTHON_UNUSED_VAR(value_count);
jpayne@68 24139 return PyUnicode_Join(__pyx_empty_unicode, value_tuple);
jpayne@68 24140 #endif
jpayne@68 24141 }
jpayne@68 24142
jpayne@68 24143 /* PyDictVersioning */
jpayne@68 24144 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS
jpayne@68 24145 static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj) {
jpayne@68 24146 PyObject *dict = Py_TYPE(obj)->tp_dict;
jpayne@68 24147 return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0;
jpayne@68 24148 }
jpayne@68 24149 static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj) {
jpayne@68 24150 PyObject **dictptr = NULL;
jpayne@68 24151 Py_ssize_t offset = Py_TYPE(obj)->tp_dictoffset;
jpayne@68 24152 if (offset) {
jpayne@68 24153 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 24154 dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj);
jpayne@68 24155 #else
jpayne@68 24156 dictptr = _PyObject_GetDictPtr(obj);
jpayne@68 24157 #endif
jpayne@68 24158 }
jpayne@68 24159 return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0;
jpayne@68 24160 }
jpayne@68 24161 static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) {
jpayne@68 24162 PyObject *dict = Py_TYPE(obj)->tp_dict;
jpayne@68 24163 if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict)))
jpayne@68 24164 return 0;
jpayne@68 24165 return obj_dict_version == __Pyx_get_object_dict_version(obj);
jpayne@68 24166 }
jpayne@68 24167 #endif
jpayne@68 24168
jpayne@68 24169 /* GetModuleGlobalName */
jpayne@68 24170 #if CYTHON_USE_DICT_VERSIONS
jpayne@68 24171 static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value)
jpayne@68 24172 #else
jpayne@68 24173 static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name)
jpayne@68 24174 #endif
jpayne@68 24175 {
jpayne@68 24176 PyObject *result;
jpayne@68 24177 #if !CYTHON_AVOID_BORROWED_REFS
jpayne@68 24178 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && PY_VERSION_HEX < 0x030d0000
jpayne@68 24179 result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash);
jpayne@68 24180 __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
jpayne@68 24181 if (likely(result)) {
jpayne@68 24182 return __Pyx_NewRef(result);
jpayne@68 24183 } else if (unlikely(PyErr_Occurred())) {
jpayne@68 24184 return NULL;
jpayne@68 24185 }
jpayne@68 24186 #elif CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 24187 if (unlikely(!__pyx_m)) {
jpayne@68 24188 return NULL;
jpayne@68 24189 }
jpayne@68 24190 result = PyObject_GetAttr(__pyx_m, name);
jpayne@68 24191 if (likely(result)) {
jpayne@68 24192 return result;
jpayne@68 24193 }
jpayne@68 24194 #else
jpayne@68 24195 result = PyDict_GetItem(__pyx_d, name);
jpayne@68 24196 __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
jpayne@68 24197 if (likely(result)) {
jpayne@68 24198 return __Pyx_NewRef(result);
jpayne@68 24199 }
jpayne@68 24200 #endif
jpayne@68 24201 #else
jpayne@68 24202 result = PyObject_GetItem(__pyx_d, name);
jpayne@68 24203 __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
jpayne@68 24204 if (likely(result)) {
jpayne@68 24205 return __Pyx_NewRef(result);
jpayne@68 24206 }
jpayne@68 24207 PyErr_Clear();
jpayne@68 24208 #endif
jpayne@68 24209 return __Pyx_GetBuiltinName(name);
jpayne@68 24210 }
jpayne@68 24211
jpayne@68 24212 /* GetItemInt */
jpayne@68 24213 static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) {
jpayne@68 24214 PyObject *r;
jpayne@68 24215 if (unlikely(!j)) return NULL;
jpayne@68 24216 r = PyObject_GetItem(o, j);
jpayne@68 24217 Py_DECREF(j);
jpayne@68 24218 return r;
jpayne@68 24219 }
jpayne@68 24220 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
jpayne@68 24221 CYTHON_NCP_UNUSED int wraparound,
jpayne@68 24222 CYTHON_NCP_UNUSED int boundscheck) {
jpayne@68 24223 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
jpayne@68 24224 Py_ssize_t wrapped_i = i;
jpayne@68 24225 if (wraparound & unlikely(i < 0)) {
jpayne@68 24226 wrapped_i += PyList_GET_SIZE(o);
jpayne@68 24227 }
jpayne@68 24228 if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyList_GET_SIZE(o)))) {
jpayne@68 24229 PyObject *r = PyList_GET_ITEM(o, wrapped_i);
jpayne@68 24230 Py_INCREF(r);
jpayne@68 24231 return r;
jpayne@68 24232 }
jpayne@68 24233 return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
jpayne@68 24234 #else
jpayne@68 24235 return PySequence_GetItem(o, i);
jpayne@68 24236 #endif
jpayne@68 24237 }
jpayne@68 24238 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
jpayne@68 24239 CYTHON_NCP_UNUSED int wraparound,
jpayne@68 24240 CYTHON_NCP_UNUSED int boundscheck) {
jpayne@68 24241 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
jpayne@68 24242 Py_ssize_t wrapped_i = i;
jpayne@68 24243 if (wraparound & unlikely(i < 0)) {
jpayne@68 24244 wrapped_i += PyTuple_GET_SIZE(o);
jpayne@68 24245 }
jpayne@68 24246 if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyTuple_GET_SIZE(o)))) {
jpayne@68 24247 PyObject *r = PyTuple_GET_ITEM(o, wrapped_i);
jpayne@68 24248 Py_INCREF(r);
jpayne@68 24249 return r;
jpayne@68 24250 }
jpayne@68 24251 return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
jpayne@68 24252 #else
jpayne@68 24253 return PySequence_GetItem(o, i);
jpayne@68 24254 #endif
jpayne@68 24255 }
jpayne@68 24256 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list,
jpayne@68 24257 CYTHON_NCP_UNUSED int wraparound,
jpayne@68 24258 CYTHON_NCP_UNUSED int boundscheck) {
jpayne@68 24259 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS
jpayne@68 24260 if (is_list || PyList_CheckExact(o)) {
jpayne@68 24261 Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o);
jpayne@68 24262 if ((!boundscheck) || (likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o))))) {
jpayne@68 24263 PyObject *r = PyList_GET_ITEM(o, n);
jpayne@68 24264 Py_INCREF(r);
jpayne@68 24265 return r;
jpayne@68 24266 }
jpayne@68 24267 }
jpayne@68 24268 else if (PyTuple_CheckExact(o)) {
jpayne@68 24269 Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o);
jpayne@68 24270 if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyTuple_GET_SIZE(o)))) {
jpayne@68 24271 PyObject *r = PyTuple_GET_ITEM(o, n);
jpayne@68 24272 Py_INCREF(r);
jpayne@68 24273 return r;
jpayne@68 24274 }
jpayne@68 24275 } else {
jpayne@68 24276 PyMappingMethods *mm = Py_TYPE(o)->tp_as_mapping;
jpayne@68 24277 PySequenceMethods *sm = Py_TYPE(o)->tp_as_sequence;
jpayne@68 24278 if (mm && mm->mp_subscript) {
jpayne@68 24279 PyObject *r, *key = PyInt_FromSsize_t(i);
jpayne@68 24280 if (unlikely(!key)) return NULL;
jpayne@68 24281 r = mm->mp_subscript(o, key);
jpayne@68 24282 Py_DECREF(key);
jpayne@68 24283 return r;
jpayne@68 24284 }
jpayne@68 24285 if (likely(sm && sm->sq_item)) {
jpayne@68 24286 if (wraparound && unlikely(i < 0) && likely(sm->sq_length)) {
jpayne@68 24287 Py_ssize_t l = sm->sq_length(o);
jpayne@68 24288 if (likely(l >= 0)) {
jpayne@68 24289 i += l;
jpayne@68 24290 } else {
jpayne@68 24291 if (!PyErr_ExceptionMatches(PyExc_OverflowError))
jpayne@68 24292 return NULL;
jpayne@68 24293 PyErr_Clear();
jpayne@68 24294 }
jpayne@68 24295 }
jpayne@68 24296 return sm->sq_item(o, i);
jpayne@68 24297 }
jpayne@68 24298 }
jpayne@68 24299 #else
jpayne@68 24300 if (is_list || !PyMapping_Check(o)) {
jpayne@68 24301 return PySequence_GetItem(o, i);
jpayne@68 24302 }
jpayne@68 24303 #endif
jpayne@68 24304 return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
jpayne@68 24305 }
jpayne@68 24306
jpayne@68 24307 /* ObjectGetItem */
jpayne@68 24308 #if CYTHON_USE_TYPE_SLOTS
jpayne@68 24309 static PyObject *__Pyx_PyObject_GetIndex(PyObject *obj, PyObject *index) {
jpayne@68 24310 PyObject *runerr = NULL;
jpayne@68 24311 Py_ssize_t key_value;
jpayne@68 24312 key_value = __Pyx_PyIndex_AsSsize_t(index);
jpayne@68 24313 if (likely(key_value != -1 || !(runerr = PyErr_Occurred()))) {
jpayne@68 24314 return __Pyx_GetItemInt_Fast(obj, key_value, 0, 1, 1);
jpayne@68 24315 }
jpayne@68 24316 if (PyErr_GivenExceptionMatches(runerr, PyExc_OverflowError)) {
jpayne@68 24317 __Pyx_TypeName index_type_name = __Pyx_PyType_GetName(Py_TYPE(index));
jpayne@68 24318 PyErr_Clear();
jpayne@68 24319 PyErr_Format(PyExc_IndexError,
jpayne@68 24320 "cannot fit '" __Pyx_FMT_TYPENAME "' into an index-sized integer", index_type_name);
jpayne@68 24321 __Pyx_DECREF_TypeName(index_type_name);
jpayne@68 24322 }
jpayne@68 24323 return NULL;
jpayne@68 24324 }
jpayne@68 24325 static PyObject *__Pyx_PyObject_GetItem_Slow(PyObject *obj, PyObject *key) {
jpayne@68 24326 __Pyx_TypeName obj_type_name;
jpayne@68 24327 if (likely(PyType_Check(obj))) {
jpayne@68 24328 PyObject *meth = __Pyx_PyObject_GetAttrStrNoError(obj, __pyx_n_s_class_getitem);
jpayne@68 24329 if (!meth) {
jpayne@68 24330 PyErr_Clear();
jpayne@68 24331 } else {
jpayne@68 24332 PyObject *result = __Pyx_PyObject_CallOneArg(meth, key);
jpayne@68 24333 Py_DECREF(meth);
jpayne@68 24334 return result;
jpayne@68 24335 }
jpayne@68 24336 }
jpayne@68 24337 obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj));
jpayne@68 24338 PyErr_Format(PyExc_TypeError,
jpayne@68 24339 "'" __Pyx_FMT_TYPENAME "' object is not subscriptable", obj_type_name);
jpayne@68 24340 __Pyx_DECREF_TypeName(obj_type_name);
jpayne@68 24341 return NULL;
jpayne@68 24342 }
jpayne@68 24343 static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject *key) {
jpayne@68 24344 PyTypeObject *tp = Py_TYPE(obj);
jpayne@68 24345 PyMappingMethods *mm = tp->tp_as_mapping;
jpayne@68 24346 PySequenceMethods *sm = tp->tp_as_sequence;
jpayne@68 24347 if (likely(mm && mm->mp_subscript)) {
jpayne@68 24348 return mm->mp_subscript(obj, key);
jpayne@68 24349 }
jpayne@68 24350 if (likely(sm && sm->sq_item)) {
jpayne@68 24351 return __Pyx_PyObject_GetIndex(obj, key);
jpayne@68 24352 }
jpayne@68 24353 return __Pyx_PyObject_GetItem_Slow(obj, key);
jpayne@68 24354 }
jpayne@68 24355 #endif
jpayne@68 24356
jpayne@68 24357 /* GetException */
jpayne@68 24358 #if CYTHON_FAST_THREAD_STATE
jpayne@68 24359 static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb)
jpayne@68 24360 #else
jpayne@68 24361 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb)
jpayne@68 24362 #endif
jpayne@68 24363 {
jpayne@68 24364 PyObject *local_type = NULL, *local_value, *local_tb = NULL;
jpayne@68 24365 #if CYTHON_FAST_THREAD_STATE
jpayne@68 24366 PyObject *tmp_type, *tmp_value, *tmp_tb;
jpayne@68 24367 #if PY_VERSION_HEX >= 0x030C00A6
jpayne@68 24368 local_value = tstate->current_exception;
jpayne@68 24369 tstate->current_exception = 0;
jpayne@68 24370 if (likely(local_value)) {
jpayne@68 24371 local_type = (PyObject*) Py_TYPE(local_value);
jpayne@68 24372 Py_INCREF(local_type);
jpayne@68 24373 local_tb = PyException_GetTraceback(local_value);
jpayne@68 24374 }
jpayne@68 24375 #else
jpayne@68 24376 local_type = tstate->curexc_type;
jpayne@68 24377 local_value = tstate->curexc_value;
jpayne@68 24378 local_tb = tstate->curexc_traceback;
jpayne@68 24379 tstate->curexc_type = 0;
jpayne@68 24380 tstate->curexc_value = 0;
jpayne@68 24381 tstate->curexc_traceback = 0;
jpayne@68 24382 #endif
jpayne@68 24383 #else
jpayne@68 24384 PyErr_Fetch(&local_type, &local_value, &local_tb);
jpayne@68 24385 #endif
jpayne@68 24386 PyErr_NormalizeException(&local_type, &local_value, &local_tb);
jpayne@68 24387 #if CYTHON_FAST_THREAD_STATE && PY_VERSION_HEX >= 0x030C00A6
jpayne@68 24388 if (unlikely(tstate->current_exception))
jpayne@68 24389 #elif CYTHON_FAST_THREAD_STATE
jpayne@68 24390 if (unlikely(tstate->curexc_type))
jpayne@68 24391 #else
jpayne@68 24392 if (unlikely(PyErr_Occurred()))
jpayne@68 24393 #endif
jpayne@68 24394 goto bad;
jpayne@68 24395 #if PY_MAJOR_VERSION >= 3
jpayne@68 24396 if (local_tb) {
jpayne@68 24397 if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
jpayne@68 24398 goto bad;
jpayne@68 24399 }
jpayne@68 24400 #endif
jpayne@68 24401 Py_XINCREF(local_tb);
jpayne@68 24402 Py_XINCREF(local_type);
jpayne@68 24403 Py_XINCREF(local_value);
jpayne@68 24404 *type = local_type;
jpayne@68 24405 *value = local_value;
jpayne@68 24406 *tb = local_tb;
jpayne@68 24407 #if CYTHON_FAST_THREAD_STATE
jpayne@68 24408 #if CYTHON_USE_EXC_INFO_STACK
jpayne@68 24409 {
jpayne@68 24410 _PyErr_StackItem *exc_info = tstate->exc_info;
jpayne@68 24411 #if PY_VERSION_HEX >= 0x030B00a4
jpayne@68 24412 tmp_value = exc_info->exc_value;
jpayne@68 24413 exc_info->exc_value = local_value;
jpayne@68 24414 tmp_type = NULL;
jpayne@68 24415 tmp_tb = NULL;
jpayne@68 24416 Py_XDECREF(local_type);
jpayne@68 24417 Py_XDECREF(local_tb);
jpayne@68 24418 #else
jpayne@68 24419 tmp_type = exc_info->exc_type;
jpayne@68 24420 tmp_value = exc_info->exc_value;
jpayne@68 24421 tmp_tb = exc_info->exc_traceback;
jpayne@68 24422 exc_info->exc_type = local_type;
jpayne@68 24423 exc_info->exc_value = local_value;
jpayne@68 24424 exc_info->exc_traceback = local_tb;
jpayne@68 24425 #endif
jpayne@68 24426 }
jpayne@68 24427 #else
jpayne@68 24428 tmp_type = tstate->exc_type;
jpayne@68 24429 tmp_value = tstate->exc_value;
jpayne@68 24430 tmp_tb = tstate->exc_traceback;
jpayne@68 24431 tstate->exc_type = local_type;
jpayne@68 24432 tstate->exc_value = local_value;
jpayne@68 24433 tstate->exc_traceback = local_tb;
jpayne@68 24434 #endif
jpayne@68 24435 Py_XDECREF(tmp_type);
jpayne@68 24436 Py_XDECREF(tmp_value);
jpayne@68 24437 Py_XDECREF(tmp_tb);
jpayne@68 24438 #else
jpayne@68 24439 PyErr_SetExcInfo(local_type, local_value, local_tb);
jpayne@68 24440 #endif
jpayne@68 24441 return 0;
jpayne@68 24442 bad:
jpayne@68 24443 *type = 0;
jpayne@68 24444 *value = 0;
jpayne@68 24445 *tb = 0;
jpayne@68 24446 Py_XDECREF(local_type);
jpayne@68 24447 Py_XDECREF(local_value);
jpayne@68 24448 Py_XDECREF(local_tb);
jpayne@68 24449 return -1;
jpayne@68 24450 }
jpayne@68 24451
jpayne@68 24452 /* SwapException */
jpayne@68 24453 #if CYTHON_FAST_THREAD_STATE
jpayne@68 24454 static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
jpayne@68 24455 PyObject *tmp_type, *tmp_value, *tmp_tb;
jpayne@68 24456 #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4
jpayne@68 24457 _PyErr_StackItem *exc_info = tstate->exc_info;
jpayne@68 24458 tmp_value = exc_info->exc_value;
jpayne@68 24459 exc_info->exc_value = *value;
jpayne@68 24460 if (tmp_value == NULL || tmp_value == Py_None) {
jpayne@68 24461 Py_XDECREF(tmp_value);
jpayne@68 24462 tmp_value = NULL;
jpayne@68 24463 tmp_type = NULL;
jpayne@68 24464 tmp_tb = NULL;
jpayne@68 24465 } else {
jpayne@68 24466 tmp_type = (PyObject*) Py_TYPE(tmp_value);
jpayne@68 24467 Py_INCREF(tmp_type);
jpayne@68 24468 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 24469 tmp_tb = ((PyBaseExceptionObject*) tmp_value)->traceback;
jpayne@68 24470 Py_XINCREF(tmp_tb);
jpayne@68 24471 #else
jpayne@68 24472 tmp_tb = PyException_GetTraceback(tmp_value);
jpayne@68 24473 #endif
jpayne@68 24474 }
jpayne@68 24475 #elif CYTHON_USE_EXC_INFO_STACK
jpayne@68 24476 _PyErr_StackItem *exc_info = tstate->exc_info;
jpayne@68 24477 tmp_type = exc_info->exc_type;
jpayne@68 24478 tmp_value = exc_info->exc_value;
jpayne@68 24479 tmp_tb = exc_info->exc_traceback;
jpayne@68 24480 exc_info->exc_type = *type;
jpayne@68 24481 exc_info->exc_value = *value;
jpayne@68 24482 exc_info->exc_traceback = *tb;
jpayne@68 24483 #else
jpayne@68 24484 tmp_type = tstate->exc_type;
jpayne@68 24485 tmp_value = tstate->exc_value;
jpayne@68 24486 tmp_tb = tstate->exc_traceback;
jpayne@68 24487 tstate->exc_type = *type;
jpayne@68 24488 tstate->exc_value = *value;
jpayne@68 24489 tstate->exc_traceback = *tb;
jpayne@68 24490 #endif
jpayne@68 24491 *type = tmp_type;
jpayne@68 24492 *value = tmp_value;
jpayne@68 24493 *tb = tmp_tb;
jpayne@68 24494 }
jpayne@68 24495 #else
jpayne@68 24496 static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) {
jpayne@68 24497 PyObject *tmp_type, *tmp_value, *tmp_tb;
jpayne@68 24498 PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb);
jpayne@68 24499 PyErr_SetExcInfo(*type, *value, *tb);
jpayne@68 24500 *type = tmp_type;
jpayne@68 24501 *value = tmp_value;
jpayne@68 24502 *tb = tmp_tb;
jpayne@68 24503 }
jpayne@68 24504 #endif
jpayne@68 24505
jpayne@68 24506 /* GetTopmostException */
jpayne@68 24507 #if CYTHON_USE_EXC_INFO_STACK && CYTHON_FAST_THREAD_STATE
jpayne@68 24508 static _PyErr_StackItem *
jpayne@68 24509 __Pyx_PyErr_GetTopmostException(PyThreadState *tstate)
jpayne@68 24510 {
jpayne@68 24511 _PyErr_StackItem *exc_info = tstate->exc_info;
jpayne@68 24512 while ((exc_info->exc_value == NULL || exc_info->exc_value == Py_None) &&
jpayne@68 24513 exc_info->previous_item != NULL)
jpayne@68 24514 {
jpayne@68 24515 exc_info = exc_info->previous_item;
jpayne@68 24516 }
jpayne@68 24517 return exc_info;
jpayne@68 24518 }
jpayne@68 24519 #endif
jpayne@68 24520
jpayne@68 24521 /* SaveResetException */
jpayne@68 24522 #if CYTHON_FAST_THREAD_STATE
jpayne@68 24523 static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
jpayne@68 24524 #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4
jpayne@68 24525 _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate);
jpayne@68 24526 PyObject *exc_value = exc_info->exc_value;
jpayne@68 24527 if (exc_value == NULL || exc_value == Py_None) {
jpayne@68 24528 *value = NULL;
jpayne@68 24529 *type = NULL;
jpayne@68 24530 *tb = NULL;
jpayne@68 24531 } else {
jpayne@68 24532 *value = exc_value;
jpayne@68 24533 Py_INCREF(*value);
jpayne@68 24534 *type = (PyObject*) Py_TYPE(exc_value);
jpayne@68 24535 Py_INCREF(*type);
jpayne@68 24536 *tb = PyException_GetTraceback(exc_value);
jpayne@68 24537 }
jpayne@68 24538 #elif CYTHON_USE_EXC_INFO_STACK
jpayne@68 24539 _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate);
jpayne@68 24540 *type = exc_info->exc_type;
jpayne@68 24541 *value = exc_info->exc_value;
jpayne@68 24542 *tb = exc_info->exc_traceback;
jpayne@68 24543 Py_XINCREF(*type);
jpayne@68 24544 Py_XINCREF(*value);
jpayne@68 24545 Py_XINCREF(*tb);
jpayne@68 24546 #else
jpayne@68 24547 *type = tstate->exc_type;
jpayne@68 24548 *value = tstate->exc_value;
jpayne@68 24549 *tb = tstate->exc_traceback;
jpayne@68 24550 Py_XINCREF(*type);
jpayne@68 24551 Py_XINCREF(*value);
jpayne@68 24552 Py_XINCREF(*tb);
jpayne@68 24553 #endif
jpayne@68 24554 }
jpayne@68 24555 static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
jpayne@68 24556 #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4
jpayne@68 24557 _PyErr_StackItem *exc_info = tstate->exc_info;
jpayne@68 24558 PyObject *tmp_value = exc_info->exc_value;
jpayne@68 24559 exc_info->exc_value = value;
jpayne@68 24560 Py_XDECREF(tmp_value);
jpayne@68 24561 Py_XDECREF(type);
jpayne@68 24562 Py_XDECREF(tb);
jpayne@68 24563 #else
jpayne@68 24564 PyObject *tmp_type, *tmp_value, *tmp_tb;
jpayne@68 24565 #if CYTHON_USE_EXC_INFO_STACK
jpayne@68 24566 _PyErr_StackItem *exc_info = tstate->exc_info;
jpayne@68 24567 tmp_type = exc_info->exc_type;
jpayne@68 24568 tmp_value = exc_info->exc_value;
jpayne@68 24569 tmp_tb = exc_info->exc_traceback;
jpayne@68 24570 exc_info->exc_type = type;
jpayne@68 24571 exc_info->exc_value = value;
jpayne@68 24572 exc_info->exc_traceback = tb;
jpayne@68 24573 #else
jpayne@68 24574 tmp_type = tstate->exc_type;
jpayne@68 24575 tmp_value = tstate->exc_value;
jpayne@68 24576 tmp_tb = tstate->exc_traceback;
jpayne@68 24577 tstate->exc_type = type;
jpayne@68 24578 tstate->exc_value = value;
jpayne@68 24579 tstate->exc_traceback = tb;
jpayne@68 24580 #endif
jpayne@68 24581 Py_XDECREF(tmp_type);
jpayne@68 24582 Py_XDECREF(tmp_value);
jpayne@68 24583 Py_XDECREF(tmp_tb);
jpayne@68 24584 #endif
jpayne@68 24585 }
jpayne@68 24586 #endif
jpayne@68 24587
jpayne@68 24588 /* PyIntBinop */
jpayne@68 24589 #if !CYTHON_COMPILING_IN_PYPY
jpayne@68 24590 static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check) {
jpayne@68 24591 CYTHON_MAYBE_UNUSED_VAR(intval);
jpayne@68 24592 CYTHON_MAYBE_UNUSED_VAR(inplace);
jpayne@68 24593 CYTHON_UNUSED_VAR(zerodivision_check);
jpayne@68 24594 #if PY_MAJOR_VERSION < 3
jpayne@68 24595 if (likely(PyInt_CheckExact(op1))) {
jpayne@68 24596 const long b = intval;
jpayne@68 24597 long x;
jpayne@68 24598 long a = PyInt_AS_LONG(op1);
jpayne@68 24599
jpayne@68 24600 x = (long)((unsigned long)a - (unsigned long)b);
jpayne@68 24601 if (likely((x^a) >= 0 || (x^~b) >= 0))
jpayne@68 24602 return PyInt_FromLong(x);
jpayne@68 24603 return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
jpayne@68 24604 }
jpayne@68 24605 #endif
jpayne@68 24606 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 24607 if (likely(PyLong_CheckExact(op1))) {
jpayne@68 24608 const long b = intval;
jpayne@68 24609 long a, x;
jpayne@68 24610 #ifdef HAVE_LONG_LONG
jpayne@68 24611 const PY_LONG_LONG llb = intval;
jpayne@68 24612 PY_LONG_LONG lla, llx;
jpayne@68 24613 #endif
jpayne@68 24614 if (unlikely(__Pyx_PyLong_IsZero(op1))) {
jpayne@68 24615 return PyLong_FromLong(-intval);
jpayne@68 24616 }
jpayne@68 24617 if (likely(__Pyx_PyLong_IsCompact(op1))) {
jpayne@68 24618 a = __Pyx_PyLong_CompactValue(op1);
jpayne@68 24619 } else {
jpayne@68 24620 const digit* digits = __Pyx_PyLong_Digits(op1);
jpayne@68 24621 const Py_ssize_t size = __Pyx_PyLong_SignedDigitCount(op1);
jpayne@68 24622 switch (size) {
jpayne@68 24623 case -2:
jpayne@68 24624 if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
jpayne@68 24625 a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
jpayne@68 24626 break;
jpayne@68 24627 #ifdef HAVE_LONG_LONG
jpayne@68 24628 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
jpayne@68 24629 lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
jpayne@68 24630 goto long_long;
jpayne@68 24631 #endif
jpayne@68 24632 }
jpayne@68 24633 CYTHON_FALLTHROUGH;
jpayne@68 24634 case 2:
jpayne@68 24635 if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
jpayne@68 24636 a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
jpayne@68 24637 break;
jpayne@68 24638 #ifdef HAVE_LONG_LONG
jpayne@68 24639 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
jpayne@68 24640 lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
jpayne@68 24641 goto long_long;
jpayne@68 24642 #endif
jpayne@68 24643 }
jpayne@68 24644 CYTHON_FALLTHROUGH;
jpayne@68 24645 case -3:
jpayne@68 24646 if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
jpayne@68 24647 a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
jpayne@68 24648 break;
jpayne@68 24649 #ifdef HAVE_LONG_LONG
jpayne@68 24650 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
jpayne@68 24651 lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
jpayne@68 24652 goto long_long;
jpayne@68 24653 #endif
jpayne@68 24654 }
jpayne@68 24655 CYTHON_FALLTHROUGH;
jpayne@68 24656 case 3:
jpayne@68 24657 if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
jpayne@68 24658 a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
jpayne@68 24659 break;
jpayne@68 24660 #ifdef HAVE_LONG_LONG
jpayne@68 24661 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
jpayne@68 24662 lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
jpayne@68 24663 goto long_long;
jpayne@68 24664 #endif
jpayne@68 24665 }
jpayne@68 24666 CYTHON_FALLTHROUGH;
jpayne@68 24667 case -4:
jpayne@68 24668 if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
jpayne@68 24669 a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
jpayne@68 24670 break;
jpayne@68 24671 #ifdef HAVE_LONG_LONG
jpayne@68 24672 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
jpayne@68 24673 lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
jpayne@68 24674 goto long_long;
jpayne@68 24675 #endif
jpayne@68 24676 }
jpayne@68 24677 CYTHON_FALLTHROUGH;
jpayne@68 24678 case 4:
jpayne@68 24679 if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
jpayne@68 24680 a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
jpayne@68 24681 break;
jpayne@68 24682 #ifdef HAVE_LONG_LONG
jpayne@68 24683 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
jpayne@68 24684 lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
jpayne@68 24685 goto long_long;
jpayne@68 24686 #endif
jpayne@68 24687 }
jpayne@68 24688 CYTHON_FALLTHROUGH;
jpayne@68 24689 default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
jpayne@68 24690 }
jpayne@68 24691 }
jpayne@68 24692 x = a - b;
jpayne@68 24693 return PyLong_FromLong(x);
jpayne@68 24694 #ifdef HAVE_LONG_LONG
jpayne@68 24695 long_long:
jpayne@68 24696 llx = lla - llb;
jpayne@68 24697 return PyLong_FromLongLong(llx);
jpayne@68 24698 #endif
jpayne@68 24699
jpayne@68 24700
jpayne@68 24701 }
jpayne@68 24702 #endif
jpayne@68 24703 if (PyFloat_CheckExact(op1)) {
jpayne@68 24704 const long b = intval;
jpayne@68 24705 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 24706 double a = __pyx_PyFloat_AsDouble(op1);
jpayne@68 24707 #else
jpayne@68 24708 double a = PyFloat_AS_DOUBLE(op1);
jpayne@68 24709 #endif
jpayne@68 24710 double result;
jpayne@68 24711
jpayne@68 24712 PyFPE_START_PROTECT("subtract", return NULL)
jpayne@68 24713 result = ((double)a) - (double)b;
jpayne@68 24714 PyFPE_END_PROTECT(result)
jpayne@68 24715 return PyFloat_FromDouble(result);
jpayne@68 24716 }
jpayne@68 24717 return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2);
jpayne@68 24718 }
jpayne@68 24719 #endif
jpayne@68 24720
jpayne@68 24721 /* RaiseTooManyValuesToUnpack */
jpayne@68 24722 static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
jpayne@68 24723 PyErr_Format(PyExc_ValueError,
jpayne@68 24724 "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected);
jpayne@68 24725 }
jpayne@68 24726
jpayne@68 24727 /* RaiseNeedMoreValuesToUnpack */
jpayne@68 24728 static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
jpayne@68 24729 PyErr_Format(PyExc_ValueError,
jpayne@68 24730 "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack",
jpayne@68 24731 index, (index == 1) ? "" : "s");
jpayne@68 24732 }
jpayne@68 24733
jpayne@68 24734 /* IterFinish */
jpayne@68 24735 static CYTHON_INLINE int __Pyx_IterFinish(void) {
jpayne@68 24736 PyObject* exc_type;
jpayne@68 24737 __Pyx_PyThreadState_declare
jpayne@68 24738 __Pyx_PyThreadState_assign
jpayne@68 24739 exc_type = __Pyx_PyErr_CurrentExceptionType();
jpayne@68 24740 if (unlikely(exc_type)) {
jpayne@68 24741 if (unlikely(!__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)))
jpayne@68 24742 return -1;
jpayne@68 24743 __Pyx_PyErr_Clear();
jpayne@68 24744 return 0;
jpayne@68 24745 }
jpayne@68 24746 return 0;
jpayne@68 24747 }
jpayne@68 24748
jpayne@68 24749 /* UnpackItemEndCheck */
jpayne@68 24750 static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) {
jpayne@68 24751 if (unlikely(retval)) {
jpayne@68 24752 Py_DECREF(retval);
jpayne@68 24753 __Pyx_RaiseTooManyValuesError(expected);
jpayne@68 24754 return -1;
jpayne@68 24755 }
jpayne@68 24756 return __Pyx_IterFinish();
jpayne@68 24757 }
jpayne@68 24758
jpayne@68 24759 /* PyIntCompare */
jpayne@68 24760 static CYTHON_INLINE PyObject* __Pyx_PyInt_NeObjC(PyObject *op1, PyObject *op2, long intval, long inplace) {
jpayne@68 24761 CYTHON_MAYBE_UNUSED_VAR(intval);
jpayne@68 24762 CYTHON_UNUSED_VAR(inplace);
jpayne@68 24763 if (op1 == op2) {
jpayne@68 24764 Py_RETURN_FALSE;
jpayne@68 24765 }
jpayne@68 24766 #if PY_MAJOR_VERSION < 3
jpayne@68 24767 if (likely(PyInt_CheckExact(op1))) {
jpayne@68 24768 const long b = intval;
jpayne@68 24769 long a = PyInt_AS_LONG(op1);
jpayne@68 24770 if (a != b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
jpayne@68 24771 }
jpayne@68 24772 #endif
jpayne@68 24773 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 24774 if (likely(PyLong_CheckExact(op1))) {
jpayne@68 24775 int unequal;
jpayne@68 24776 unsigned long uintval;
jpayne@68 24777 Py_ssize_t size = __Pyx_PyLong_DigitCount(op1);
jpayne@68 24778 const digit* digits = __Pyx_PyLong_Digits(op1);
jpayne@68 24779 if (intval == 0) {
jpayne@68 24780 if (__Pyx_PyLong_IsZero(op1) != 1) Py_RETURN_TRUE; else Py_RETURN_FALSE;
jpayne@68 24781 } else if (intval < 0) {
jpayne@68 24782 if (__Pyx_PyLong_IsNonNeg(op1))
jpayne@68 24783 Py_RETURN_TRUE;
jpayne@68 24784 intval = -intval;
jpayne@68 24785 } else {
jpayne@68 24786 if (__Pyx_PyLong_IsNeg(op1))
jpayne@68 24787 Py_RETURN_TRUE;
jpayne@68 24788 }
jpayne@68 24789 uintval = (unsigned long) intval;
jpayne@68 24790 #if PyLong_SHIFT * 4 < SIZEOF_LONG*8
jpayne@68 24791 if (uintval >> (PyLong_SHIFT * 4)) {
jpayne@68 24792 unequal = (size != 5) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
jpayne@68 24793 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[4] != ((uintval >> (4 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
jpayne@68 24794 } else
jpayne@68 24795 #endif
jpayne@68 24796 #if PyLong_SHIFT * 3 < SIZEOF_LONG*8
jpayne@68 24797 if (uintval >> (PyLong_SHIFT * 3)) {
jpayne@68 24798 unequal = (size != 4) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
jpayne@68 24799 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
jpayne@68 24800 } else
jpayne@68 24801 #endif
jpayne@68 24802 #if PyLong_SHIFT * 2 < SIZEOF_LONG*8
jpayne@68 24803 if (uintval >> (PyLong_SHIFT * 2)) {
jpayne@68 24804 unequal = (size != 3) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
jpayne@68 24805 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
jpayne@68 24806 } else
jpayne@68 24807 #endif
jpayne@68 24808 #if PyLong_SHIFT * 1 < SIZEOF_LONG*8
jpayne@68 24809 if (uintval >> (PyLong_SHIFT * 1)) {
jpayne@68 24810 unequal = (size != 2) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
jpayne@68 24811 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
jpayne@68 24812 } else
jpayne@68 24813 #endif
jpayne@68 24814 unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK));
jpayne@68 24815 if (unequal != 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
jpayne@68 24816 }
jpayne@68 24817 #endif
jpayne@68 24818 if (PyFloat_CheckExact(op1)) {
jpayne@68 24819 const long b = intval;
jpayne@68 24820 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 24821 double a = __pyx_PyFloat_AsDouble(op1);
jpayne@68 24822 #else
jpayne@68 24823 double a = PyFloat_AS_DOUBLE(op1);
jpayne@68 24824 #endif
jpayne@68 24825 if ((double)a != (double)b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
jpayne@68 24826 }
jpayne@68 24827 return (
jpayne@68 24828 PyObject_RichCompare(op1, op2, Py_NE));
jpayne@68 24829 }
jpayne@68 24830
jpayne@68 24831 /* FixUpExtensionType */
jpayne@68 24832 #if CYTHON_USE_TYPE_SPECS
jpayne@68 24833 static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type) {
jpayne@68 24834 #if PY_VERSION_HEX > 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 24835 CYTHON_UNUSED_VAR(spec);
jpayne@68 24836 CYTHON_UNUSED_VAR(type);
jpayne@68 24837 #else
jpayne@68 24838 const PyType_Slot *slot = spec->slots;
jpayne@68 24839 while (slot && slot->slot && slot->slot != Py_tp_members)
jpayne@68 24840 slot++;
jpayne@68 24841 if (slot && slot->slot == Py_tp_members) {
jpayne@68 24842 int changed = 0;
jpayne@68 24843 #if !(PY_VERSION_HEX <= 0x030900b1 && CYTHON_COMPILING_IN_CPYTHON)
jpayne@68 24844 const
jpayne@68 24845 #endif
jpayne@68 24846 PyMemberDef *memb = (PyMemberDef*) slot->pfunc;
jpayne@68 24847 while (memb && memb->name) {
jpayne@68 24848 if (memb->name[0] == '_' && memb->name[1] == '_') {
jpayne@68 24849 #if PY_VERSION_HEX < 0x030900b1
jpayne@68 24850 if (strcmp(memb->name, "__weaklistoffset__") == 0) {
jpayne@68 24851 assert(memb->type == T_PYSSIZET);
jpayne@68 24852 assert(memb->flags == READONLY);
jpayne@68 24853 type->tp_weaklistoffset = memb->offset;
jpayne@68 24854 changed = 1;
jpayne@68 24855 }
jpayne@68 24856 else if (strcmp(memb->name, "__dictoffset__") == 0) {
jpayne@68 24857 assert(memb->type == T_PYSSIZET);
jpayne@68 24858 assert(memb->flags == READONLY);
jpayne@68 24859 type->tp_dictoffset = memb->offset;
jpayne@68 24860 changed = 1;
jpayne@68 24861 }
jpayne@68 24862 #if CYTHON_METH_FASTCALL
jpayne@68 24863 else if (strcmp(memb->name, "__vectorcalloffset__") == 0) {
jpayne@68 24864 assert(memb->type == T_PYSSIZET);
jpayne@68 24865 assert(memb->flags == READONLY);
jpayne@68 24866 #if PY_VERSION_HEX >= 0x030800b4
jpayne@68 24867 type->tp_vectorcall_offset = memb->offset;
jpayne@68 24868 #else
jpayne@68 24869 type->tp_print = (printfunc) memb->offset;
jpayne@68 24870 #endif
jpayne@68 24871 changed = 1;
jpayne@68 24872 }
jpayne@68 24873 #endif
jpayne@68 24874 #else
jpayne@68 24875 if ((0));
jpayne@68 24876 #endif
jpayne@68 24877 #if PY_VERSION_HEX <= 0x030900b1 && CYTHON_COMPILING_IN_CPYTHON
jpayne@68 24878 else if (strcmp(memb->name, "__module__") == 0) {
jpayne@68 24879 PyObject *descr;
jpayne@68 24880 assert(memb->type == T_OBJECT);
jpayne@68 24881 assert(memb->flags == 0 || memb->flags == READONLY);
jpayne@68 24882 descr = PyDescr_NewMember(type, memb);
jpayne@68 24883 if (unlikely(!descr))
jpayne@68 24884 return -1;
jpayne@68 24885 if (unlikely(PyDict_SetItem(type->tp_dict, PyDescr_NAME(descr), descr) < 0)) {
jpayne@68 24886 Py_DECREF(descr);
jpayne@68 24887 return -1;
jpayne@68 24888 }
jpayne@68 24889 Py_DECREF(descr);
jpayne@68 24890 changed = 1;
jpayne@68 24891 }
jpayne@68 24892 #endif
jpayne@68 24893 }
jpayne@68 24894 memb++;
jpayne@68 24895 }
jpayne@68 24896 if (changed)
jpayne@68 24897 PyType_Modified(type);
jpayne@68 24898 }
jpayne@68 24899 #endif
jpayne@68 24900 return 0;
jpayne@68 24901 }
jpayne@68 24902 #endif
jpayne@68 24903
jpayne@68 24904 /* PyObjectCallMethod0 */
jpayne@68 24905 static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) {
jpayne@68 24906 PyObject *method = NULL, *result = NULL;
jpayne@68 24907 int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method);
jpayne@68 24908 if (likely(is_method)) {
jpayne@68 24909 result = __Pyx_PyObject_CallOneArg(method, obj);
jpayne@68 24910 Py_DECREF(method);
jpayne@68 24911 return result;
jpayne@68 24912 }
jpayne@68 24913 if (unlikely(!method)) goto bad;
jpayne@68 24914 result = __Pyx_PyObject_CallNoArg(method);
jpayne@68 24915 Py_DECREF(method);
jpayne@68 24916 bad:
jpayne@68 24917 return result;
jpayne@68 24918 }
jpayne@68 24919
jpayne@68 24920 /* ValidateBasesTuple */
jpayne@68 24921 #if CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_USE_TYPE_SPECS
jpayne@68 24922 static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffset, PyObject *bases) {
jpayne@68 24923 Py_ssize_t i, n;
jpayne@68 24924 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 24925 n = PyTuple_GET_SIZE(bases);
jpayne@68 24926 #else
jpayne@68 24927 n = PyTuple_Size(bases);
jpayne@68 24928 if (n < 0) return -1;
jpayne@68 24929 #endif
jpayne@68 24930 for (i = 1; i < n; i++)
jpayne@68 24931 {
jpayne@68 24932 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 24933 PyObject *b0 = PySequence_GetItem(bases, i);
jpayne@68 24934 if (!b0) return -1;
jpayne@68 24935 #elif CYTHON_ASSUME_SAFE_MACROS
jpayne@68 24936 PyObject *b0 = PyTuple_GET_ITEM(bases, i);
jpayne@68 24937 #else
jpayne@68 24938 PyObject *b0 = PyTuple_GetItem(bases, i);
jpayne@68 24939 if (!b0) return -1;
jpayne@68 24940 #endif
jpayne@68 24941 PyTypeObject *b;
jpayne@68 24942 #if PY_MAJOR_VERSION < 3
jpayne@68 24943 if (PyClass_Check(b0))
jpayne@68 24944 {
jpayne@68 24945 PyErr_Format(PyExc_TypeError, "base class '%.200s' is an old-style class",
jpayne@68 24946 PyString_AS_STRING(((PyClassObject*)b0)->cl_name));
jpayne@68 24947 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 24948 Py_DECREF(b0);
jpayne@68 24949 #endif
jpayne@68 24950 return -1;
jpayne@68 24951 }
jpayne@68 24952 #endif
jpayne@68 24953 b = (PyTypeObject*) b0;
jpayne@68 24954 if (!__Pyx_PyType_HasFeature(b, Py_TPFLAGS_HEAPTYPE))
jpayne@68 24955 {
jpayne@68 24956 __Pyx_TypeName b_name = __Pyx_PyType_GetName(b);
jpayne@68 24957 PyErr_Format(PyExc_TypeError,
jpayne@68 24958 "base class '" __Pyx_FMT_TYPENAME "' is not a heap type", b_name);
jpayne@68 24959 __Pyx_DECREF_TypeName(b_name);
jpayne@68 24960 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 24961 Py_DECREF(b0);
jpayne@68 24962 #endif
jpayne@68 24963 return -1;
jpayne@68 24964 }
jpayne@68 24965 if (dictoffset == 0)
jpayne@68 24966 {
jpayne@68 24967 Py_ssize_t b_dictoffset = 0;
jpayne@68 24968 #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY
jpayne@68 24969 b_dictoffset = b->tp_dictoffset;
jpayne@68 24970 #else
jpayne@68 24971 PyObject *py_b_dictoffset = PyObject_GetAttrString((PyObject*)b, "__dictoffset__");
jpayne@68 24972 if (!py_b_dictoffset) goto dictoffset_return;
jpayne@68 24973 b_dictoffset = PyLong_AsSsize_t(py_b_dictoffset);
jpayne@68 24974 Py_DECREF(py_b_dictoffset);
jpayne@68 24975 if (b_dictoffset == -1 && PyErr_Occurred()) goto dictoffset_return;
jpayne@68 24976 #endif
jpayne@68 24977 if (b_dictoffset) {
jpayne@68 24978 {
jpayne@68 24979 __Pyx_TypeName b_name = __Pyx_PyType_GetName(b);
jpayne@68 24980 PyErr_Format(PyExc_TypeError,
jpayne@68 24981 "extension type '%.200s' has no __dict__ slot, "
jpayne@68 24982 "but base type '" __Pyx_FMT_TYPENAME "' has: "
jpayne@68 24983 "either add 'cdef dict __dict__' to the extension type "
jpayne@68 24984 "or add '__slots__ = [...]' to the base type",
jpayne@68 24985 type_name, b_name);
jpayne@68 24986 __Pyx_DECREF_TypeName(b_name);
jpayne@68 24987 }
jpayne@68 24988 #if !(CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY)
jpayne@68 24989 dictoffset_return:
jpayne@68 24990 #endif
jpayne@68 24991 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 24992 Py_DECREF(b0);
jpayne@68 24993 #endif
jpayne@68 24994 return -1;
jpayne@68 24995 }
jpayne@68 24996 }
jpayne@68 24997 #if CYTHON_AVOID_BORROWED_REFS
jpayne@68 24998 Py_DECREF(b0);
jpayne@68 24999 #endif
jpayne@68 25000 }
jpayne@68 25001 return 0;
jpayne@68 25002 }
jpayne@68 25003 #endif
jpayne@68 25004
jpayne@68 25005 /* PyType_Ready */
jpayne@68 25006 static int __Pyx_PyType_Ready(PyTypeObject *t) {
jpayne@68 25007 #if CYTHON_USE_TYPE_SPECS || !(CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API) || defined(PYSTON_MAJOR_VERSION)
jpayne@68 25008 (void)__Pyx_PyObject_CallMethod0;
jpayne@68 25009 #if CYTHON_USE_TYPE_SPECS
jpayne@68 25010 (void)__Pyx_validate_bases_tuple;
jpayne@68 25011 #endif
jpayne@68 25012 return PyType_Ready(t);
jpayne@68 25013 #else
jpayne@68 25014 int r;
jpayne@68 25015 PyObject *bases = __Pyx_PyType_GetSlot(t, tp_bases, PyObject*);
jpayne@68 25016 if (bases && unlikely(__Pyx_validate_bases_tuple(t->tp_name, t->tp_dictoffset, bases) == -1))
jpayne@68 25017 return -1;
jpayne@68 25018 #if PY_VERSION_HEX >= 0x03050000 && !defined(PYSTON_MAJOR_VERSION)
jpayne@68 25019 {
jpayne@68 25020 int gc_was_enabled;
jpayne@68 25021 #if PY_VERSION_HEX >= 0x030A00b1
jpayne@68 25022 gc_was_enabled = PyGC_Disable();
jpayne@68 25023 (void)__Pyx_PyObject_CallMethod0;
jpayne@68 25024 #else
jpayne@68 25025 PyObject *ret, *py_status;
jpayne@68 25026 PyObject *gc = NULL;
jpayne@68 25027 #if PY_VERSION_HEX >= 0x030700a1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM+0 >= 0x07030400)
jpayne@68 25028 gc = PyImport_GetModule(__pyx_kp_u_gc);
jpayne@68 25029 #endif
jpayne@68 25030 if (unlikely(!gc)) gc = PyImport_Import(__pyx_kp_u_gc);
jpayne@68 25031 if (unlikely(!gc)) return -1;
jpayne@68 25032 py_status = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_isenabled);
jpayne@68 25033 if (unlikely(!py_status)) {
jpayne@68 25034 Py_DECREF(gc);
jpayne@68 25035 return -1;
jpayne@68 25036 }
jpayne@68 25037 gc_was_enabled = __Pyx_PyObject_IsTrue(py_status);
jpayne@68 25038 Py_DECREF(py_status);
jpayne@68 25039 if (gc_was_enabled > 0) {
jpayne@68 25040 ret = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_disable);
jpayne@68 25041 if (unlikely(!ret)) {
jpayne@68 25042 Py_DECREF(gc);
jpayne@68 25043 return -1;
jpayne@68 25044 }
jpayne@68 25045 Py_DECREF(ret);
jpayne@68 25046 } else if (unlikely(gc_was_enabled == -1)) {
jpayne@68 25047 Py_DECREF(gc);
jpayne@68 25048 return -1;
jpayne@68 25049 }
jpayne@68 25050 #endif
jpayne@68 25051 t->tp_flags |= Py_TPFLAGS_HEAPTYPE;
jpayne@68 25052 #if PY_VERSION_HEX >= 0x030A0000
jpayne@68 25053 t->tp_flags |= Py_TPFLAGS_IMMUTABLETYPE;
jpayne@68 25054 #endif
jpayne@68 25055 #else
jpayne@68 25056 (void)__Pyx_PyObject_CallMethod0;
jpayne@68 25057 #endif
jpayne@68 25058 r = PyType_Ready(t);
jpayne@68 25059 #if PY_VERSION_HEX >= 0x03050000 && !defined(PYSTON_MAJOR_VERSION)
jpayne@68 25060 t->tp_flags &= ~Py_TPFLAGS_HEAPTYPE;
jpayne@68 25061 #if PY_VERSION_HEX >= 0x030A00b1
jpayne@68 25062 if (gc_was_enabled)
jpayne@68 25063 PyGC_Enable();
jpayne@68 25064 #else
jpayne@68 25065 if (gc_was_enabled) {
jpayne@68 25066 PyObject *tp, *v, *tb;
jpayne@68 25067 PyErr_Fetch(&tp, &v, &tb);
jpayne@68 25068 ret = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_enable);
jpayne@68 25069 if (likely(ret || r == -1)) {
jpayne@68 25070 Py_XDECREF(ret);
jpayne@68 25071 PyErr_Restore(tp, v, tb);
jpayne@68 25072 } else {
jpayne@68 25073 Py_XDECREF(tp);
jpayne@68 25074 Py_XDECREF(v);
jpayne@68 25075 Py_XDECREF(tb);
jpayne@68 25076 r = -1;
jpayne@68 25077 }
jpayne@68 25078 }
jpayne@68 25079 Py_DECREF(gc);
jpayne@68 25080 #endif
jpayne@68 25081 }
jpayne@68 25082 #endif
jpayne@68 25083 return r;
jpayne@68 25084 #endif
jpayne@68 25085 }
jpayne@68 25086
jpayne@68 25087 /* PyObject_GenericGetAttrNoDict */
jpayne@68 25088 #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
jpayne@68 25089 static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) {
jpayne@68 25090 __Pyx_TypeName type_name = __Pyx_PyType_GetName(tp);
jpayne@68 25091 PyErr_Format(PyExc_AttributeError,
jpayne@68 25092 #if PY_MAJOR_VERSION >= 3
jpayne@68 25093 "'" __Pyx_FMT_TYPENAME "' object has no attribute '%U'",
jpayne@68 25094 type_name, attr_name);
jpayne@68 25095 #else
jpayne@68 25096 "'" __Pyx_FMT_TYPENAME "' object has no attribute '%.400s'",
jpayne@68 25097 type_name, PyString_AS_STRING(attr_name));
jpayne@68 25098 #endif
jpayne@68 25099 __Pyx_DECREF_TypeName(type_name);
jpayne@68 25100 return NULL;
jpayne@68 25101 }
jpayne@68 25102 static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) {
jpayne@68 25103 PyObject *descr;
jpayne@68 25104 PyTypeObject *tp = Py_TYPE(obj);
jpayne@68 25105 if (unlikely(!PyString_Check(attr_name))) {
jpayne@68 25106 return PyObject_GenericGetAttr(obj, attr_name);
jpayne@68 25107 }
jpayne@68 25108 assert(!tp->tp_dictoffset);
jpayne@68 25109 descr = _PyType_Lookup(tp, attr_name);
jpayne@68 25110 if (unlikely(!descr)) {
jpayne@68 25111 return __Pyx_RaiseGenericGetAttributeError(tp, attr_name);
jpayne@68 25112 }
jpayne@68 25113 Py_INCREF(descr);
jpayne@68 25114 #if PY_MAJOR_VERSION < 3
jpayne@68 25115 if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS)))
jpayne@68 25116 #endif
jpayne@68 25117 {
jpayne@68 25118 descrgetfunc f = Py_TYPE(descr)->tp_descr_get;
jpayne@68 25119 if (unlikely(f)) {
jpayne@68 25120 PyObject *res = f(descr, obj, (PyObject *)tp);
jpayne@68 25121 Py_DECREF(descr);
jpayne@68 25122 return res;
jpayne@68 25123 }
jpayne@68 25124 }
jpayne@68 25125 return descr;
jpayne@68 25126 }
jpayne@68 25127 #endif
jpayne@68 25128
jpayne@68 25129 /* PyObject_GenericGetAttr */
jpayne@68 25130 #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
jpayne@68 25131 static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) {
jpayne@68 25132 if (unlikely(Py_TYPE(obj)->tp_dictoffset)) {
jpayne@68 25133 return PyObject_GenericGetAttr(obj, attr_name);
jpayne@68 25134 }
jpayne@68 25135 return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name);
jpayne@68 25136 }
jpayne@68 25137 #endif
jpayne@68 25138
jpayne@68 25139 /* SetVTable */
jpayne@68 25140 static int __Pyx_SetVtable(PyTypeObject *type, void *vtable) {
jpayne@68 25141 PyObject *ob = PyCapsule_New(vtable, 0, 0);
jpayne@68 25142 if (unlikely(!ob))
jpayne@68 25143 goto bad;
jpayne@68 25144 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 25145 if (unlikely(PyObject_SetAttr((PyObject *) type, __pyx_n_s_pyx_vtable, ob) < 0))
jpayne@68 25146 #else
jpayne@68 25147 if (unlikely(PyDict_SetItem(type->tp_dict, __pyx_n_s_pyx_vtable, ob) < 0))
jpayne@68 25148 #endif
jpayne@68 25149 goto bad;
jpayne@68 25150 Py_DECREF(ob);
jpayne@68 25151 return 0;
jpayne@68 25152 bad:
jpayne@68 25153 Py_XDECREF(ob);
jpayne@68 25154 return -1;
jpayne@68 25155 }
jpayne@68 25156
jpayne@68 25157 /* GetVTable */
jpayne@68 25158 static void* __Pyx_GetVtable(PyTypeObject *type) {
jpayne@68 25159 void* ptr;
jpayne@68 25160 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 25161 PyObject *ob = PyObject_GetAttr((PyObject *)type, __pyx_n_s_pyx_vtable);
jpayne@68 25162 #else
jpayne@68 25163 PyObject *ob = PyObject_GetItem(type->tp_dict, __pyx_n_s_pyx_vtable);
jpayne@68 25164 #endif
jpayne@68 25165 if (!ob)
jpayne@68 25166 goto bad;
jpayne@68 25167 ptr = PyCapsule_GetPointer(ob, 0);
jpayne@68 25168 if (!ptr && !PyErr_Occurred())
jpayne@68 25169 PyErr_SetString(PyExc_RuntimeError, "invalid vtable found for imported type");
jpayne@68 25170 Py_DECREF(ob);
jpayne@68 25171 return ptr;
jpayne@68 25172 bad:
jpayne@68 25173 Py_XDECREF(ob);
jpayne@68 25174 return NULL;
jpayne@68 25175 }
jpayne@68 25176
jpayne@68 25177 /* MergeVTables */
jpayne@68 25178 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 25179 static int __Pyx_MergeVtables(PyTypeObject *type) {
jpayne@68 25180 int i;
jpayne@68 25181 void** base_vtables;
jpayne@68 25182 __Pyx_TypeName tp_base_name;
jpayne@68 25183 __Pyx_TypeName base_name;
jpayne@68 25184 void* unknown = (void*)-1;
jpayne@68 25185 PyObject* bases = type->tp_bases;
jpayne@68 25186 int base_depth = 0;
jpayne@68 25187 {
jpayne@68 25188 PyTypeObject* base = type->tp_base;
jpayne@68 25189 while (base) {
jpayne@68 25190 base_depth += 1;
jpayne@68 25191 base = base->tp_base;
jpayne@68 25192 }
jpayne@68 25193 }
jpayne@68 25194 base_vtables = (void**) malloc(sizeof(void*) * (size_t)(base_depth + 1));
jpayne@68 25195 base_vtables[0] = unknown;
jpayne@68 25196 for (i = 1; i < PyTuple_GET_SIZE(bases); i++) {
jpayne@68 25197 void* base_vtable = __Pyx_GetVtable(((PyTypeObject*)PyTuple_GET_ITEM(bases, i)));
jpayne@68 25198 if (base_vtable != NULL) {
jpayne@68 25199 int j;
jpayne@68 25200 PyTypeObject* base = type->tp_base;
jpayne@68 25201 for (j = 0; j < base_depth; j++) {
jpayne@68 25202 if (base_vtables[j] == unknown) {
jpayne@68 25203 base_vtables[j] = __Pyx_GetVtable(base);
jpayne@68 25204 base_vtables[j + 1] = unknown;
jpayne@68 25205 }
jpayne@68 25206 if (base_vtables[j] == base_vtable) {
jpayne@68 25207 break;
jpayne@68 25208 } else if (base_vtables[j] == NULL) {
jpayne@68 25209 goto bad;
jpayne@68 25210 }
jpayne@68 25211 base = base->tp_base;
jpayne@68 25212 }
jpayne@68 25213 }
jpayne@68 25214 }
jpayne@68 25215 PyErr_Clear();
jpayne@68 25216 free(base_vtables);
jpayne@68 25217 return 0;
jpayne@68 25218 bad:
jpayne@68 25219 tp_base_name = __Pyx_PyType_GetName(type->tp_base);
jpayne@68 25220 base_name = __Pyx_PyType_GetName((PyTypeObject*)PyTuple_GET_ITEM(bases, i));
jpayne@68 25221 PyErr_Format(PyExc_TypeError,
jpayne@68 25222 "multiple bases have vtable conflict: '" __Pyx_FMT_TYPENAME "' and '" __Pyx_FMT_TYPENAME "'", tp_base_name, base_name);
jpayne@68 25223 __Pyx_DECREF_TypeName(tp_base_name);
jpayne@68 25224 __Pyx_DECREF_TypeName(base_name);
jpayne@68 25225 free(base_vtables);
jpayne@68 25226 return -1;
jpayne@68 25227 }
jpayne@68 25228 #endif
jpayne@68 25229
jpayne@68 25230 /* SetupReduce */
jpayne@68 25231 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 25232 static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) {
jpayne@68 25233 int ret;
jpayne@68 25234 PyObject *name_attr;
jpayne@68 25235 name_attr = __Pyx_PyObject_GetAttrStrNoError(meth, __pyx_n_s_name_2);
jpayne@68 25236 if (likely(name_attr)) {
jpayne@68 25237 ret = PyObject_RichCompareBool(name_attr, name, Py_EQ);
jpayne@68 25238 } else {
jpayne@68 25239 ret = -1;
jpayne@68 25240 }
jpayne@68 25241 if (unlikely(ret < 0)) {
jpayne@68 25242 PyErr_Clear();
jpayne@68 25243 ret = 0;
jpayne@68 25244 }
jpayne@68 25245 Py_XDECREF(name_attr);
jpayne@68 25246 return ret;
jpayne@68 25247 }
jpayne@68 25248 static int __Pyx_setup_reduce(PyObject* type_obj) {
jpayne@68 25249 int ret = 0;
jpayne@68 25250 PyObject *object_reduce = NULL;
jpayne@68 25251 PyObject *object_getstate = NULL;
jpayne@68 25252 PyObject *object_reduce_ex = NULL;
jpayne@68 25253 PyObject *reduce = NULL;
jpayne@68 25254 PyObject *reduce_ex = NULL;
jpayne@68 25255 PyObject *reduce_cython = NULL;
jpayne@68 25256 PyObject *setstate = NULL;
jpayne@68 25257 PyObject *setstate_cython = NULL;
jpayne@68 25258 PyObject *getstate = NULL;
jpayne@68 25259 #if CYTHON_USE_PYTYPE_LOOKUP
jpayne@68 25260 getstate = _PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate);
jpayne@68 25261 #else
jpayne@68 25262 getstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_getstate);
jpayne@68 25263 if (!getstate && PyErr_Occurred()) {
jpayne@68 25264 goto __PYX_BAD;
jpayne@68 25265 }
jpayne@68 25266 #endif
jpayne@68 25267 if (getstate) {
jpayne@68 25268 #if CYTHON_USE_PYTYPE_LOOKUP
jpayne@68 25269 object_getstate = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_getstate);
jpayne@68 25270 #else
jpayne@68 25271 object_getstate = __Pyx_PyObject_GetAttrStrNoError((PyObject*)&PyBaseObject_Type, __pyx_n_s_getstate);
jpayne@68 25272 if (!object_getstate && PyErr_Occurred()) {
jpayne@68 25273 goto __PYX_BAD;
jpayne@68 25274 }
jpayne@68 25275 #endif
jpayne@68 25276 if (object_getstate != getstate) {
jpayne@68 25277 goto __PYX_GOOD;
jpayne@68 25278 }
jpayne@68 25279 }
jpayne@68 25280 #if CYTHON_USE_PYTYPE_LOOKUP
jpayne@68 25281 object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD;
jpayne@68 25282 #else
jpayne@68 25283 object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD;
jpayne@68 25284 #endif
jpayne@68 25285 reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto __PYX_BAD;
jpayne@68 25286 if (reduce_ex == object_reduce_ex) {
jpayne@68 25287 #if CYTHON_USE_PYTYPE_LOOKUP
jpayne@68 25288 object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD;
jpayne@68 25289 #else
jpayne@68 25290 object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD;
jpayne@68 25291 #endif
jpayne@68 25292 reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto __PYX_BAD;
jpayne@68 25293 if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) {
jpayne@68 25294 reduce_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_reduce_cython);
jpayne@68 25295 if (likely(reduce_cython)) {
jpayne@68 25296 ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
jpayne@68 25297 ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
jpayne@68 25298 } else if (reduce == object_reduce || PyErr_Occurred()) {
jpayne@68 25299 goto __PYX_BAD;
jpayne@68 25300 }
jpayne@68 25301 setstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate);
jpayne@68 25302 if (!setstate) PyErr_Clear();
jpayne@68 25303 if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) {
jpayne@68 25304 setstate_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate_cython);
jpayne@68 25305 if (likely(setstate_cython)) {
jpayne@68 25306 ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
jpayne@68 25307 ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
jpayne@68 25308 } else if (!setstate || PyErr_Occurred()) {
jpayne@68 25309 goto __PYX_BAD;
jpayne@68 25310 }
jpayne@68 25311 }
jpayne@68 25312 PyType_Modified((PyTypeObject*)type_obj);
jpayne@68 25313 }
jpayne@68 25314 }
jpayne@68 25315 goto __PYX_GOOD;
jpayne@68 25316 __PYX_BAD:
jpayne@68 25317 if (!PyErr_Occurred()) {
jpayne@68 25318 __Pyx_TypeName type_obj_name =
jpayne@68 25319 __Pyx_PyType_GetName((PyTypeObject*)type_obj);
jpayne@68 25320 PyErr_Format(PyExc_RuntimeError,
jpayne@68 25321 "Unable to initialize pickling for " __Pyx_FMT_TYPENAME, type_obj_name);
jpayne@68 25322 __Pyx_DECREF_TypeName(type_obj_name);
jpayne@68 25323 }
jpayne@68 25324 ret = -1;
jpayne@68 25325 __PYX_GOOD:
jpayne@68 25326 #if !CYTHON_USE_PYTYPE_LOOKUP
jpayne@68 25327 Py_XDECREF(object_reduce);
jpayne@68 25328 Py_XDECREF(object_reduce_ex);
jpayne@68 25329 Py_XDECREF(object_getstate);
jpayne@68 25330 Py_XDECREF(getstate);
jpayne@68 25331 #endif
jpayne@68 25332 Py_XDECREF(reduce);
jpayne@68 25333 Py_XDECREF(reduce_ex);
jpayne@68 25334 Py_XDECREF(reduce_cython);
jpayne@68 25335 Py_XDECREF(setstate);
jpayne@68 25336 Py_XDECREF(setstate_cython);
jpayne@68 25337 return ret;
jpayne@68 25338 }
jpayne@68 25339 #endif
jpayne@68 25340
jpayne@68 25341 /* TypeImport */
jpayne@68 25342 #ifndef __PYX_HAVE_RT_ImportType_3_0_11
jpayne@68 25343 #define __PYX_HAVE_RT_ImportType_3_0_11
jpayne@68 25344 static PyTypeObject *__Pyx_ImportType_3_0_11(PyObject *module, const char *module_name, const char *class_name,
jpayne@68 25345 size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_11 check_size)
jpayne@68 25346 {
jpayne@68 25347 PyObject *result = 0;
jpayne@68 25348 char warning[200];
jpayne@68 25349 Py_ssize_t basicsize;
jpayne@68 25350 Py_ssize_t itemsize;
jpayne@68 25351 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 25352 PyObject *py_basicsize;
jpayne@68 25353 PyObject *py_itemsize;
jpayne@68 25354 #endif
jpayne@68 25355 result = PyObject_GetAttrString(module, class_name);
jpayne@68 25356 if (!result)
jpayne@68 25357 goto bad;
jpayne@68 25358 if (!PyType_Check(result)) {
jpayne@68 25359 PyErr_Format(PyExc_TypeError,
jpayne@68 25360 "%.200s.%.200s is not a type object",
jpayne@68 25361 module_name, class_name);
jpayne@68 25362 goto bad;
jpayne@68 25363 }
jpayne@68 25364 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 25365 basicsize = ((PyTypeObject *)result)->tp_basicsize;
jpayne@68 25366 itemsize = ((PyTypeObject *)result)->tp_itemsize;
jpayne@68 25367 #else
jpayne@68 25368 py_basicsize = PyObject_GetAttrString(result, "__basicsize__");
jpayne@68 25369 if (!py_basicsize)
jpayne@68 25370 goto bad;
jpayne@68 25371 basicsize = PyLong_AsSsize_t(py_basicsize);
jpayne@68 25372 Py_DECREF(py_basicsize);
jpayne@68 25373 py_basicsize = 0;
jpayne@68 25374 if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred())
jpayne@68 25375 goto bad;
jpayne@68 25376 py_itemsize = PyObject_GetAttrString(result, "__itemsize__");
jpayne@68 25377 if (!py_itemsize)
jpayne@68 25378 goto bad;
jpayne@68 25379 itemsize = PyLong_AsSsize_t(py_itemsize);
jpayne@68 25380 Py_DECREF(py_itemsize);
jpayne@68 25381 py_itemsize = 0;
jpayne@68 25382 if (itemsize == (Py_ssize_t)-1 && PyErr_Occurred())
jpayne@68 25383 goto bad;
jpayne@68 25384 #endif
jpayne@68 25385 if (itemsize) {
jpayne@68 25386 if (size % alignment) {
jpayne@68 25387 alignment = size % alignment;
jpayne@68 25388 }
jpayne@68 25389 if (itemsize < (Py_ssize_t)alignment)
jpayne@68 25390 itemsize = (Py_ssize_t)alignment;
jpayne@68 25391 }
jpayne@68 25392 if ((size_t)(basicsize + itemsize) < size) {
jpayne@68 25393 PyErr_Format(PyExc_ValueError,
jpayne@68 25394 "%.200s.%.200s size changed, may indicate binary incompatibility. "
jpayne@68 25395 "Expected %zd from C header, got %zd from PyObject",
jpayne@68 25396 module_name, class_name, size, basicsize+itemsize);
jpayne@68 25397 goto bad;
jpayne@68 25398 }
jpayne@68 25399 if (check_size == __Pyx_ImportType_CheckSize_Error_3_0_11 &&
jpayne@68 25400 ((size_t)basicsize > size || (size_t)(basicsize + itemsize) < size)) {
jpayne@68 25401 PyErr_Format(PyExc_ValueError,
jpayne@68 25402 "%.200s.%.200s size changed, may indicate binary incompatibility. "
jpayne@68 25403 "Expected %zd from C header, got %zd-%zd from PyObject",
jpayne@68 25404 module_name, class_name, size, basicsize, basicsize+itemsize);
jpayne@68 25405 goto bad;
jpayne@68 25406 }
jpayne@68 25407 else if (check_size == __Pyx_ImportType_CheckSize_Warn_3_0_11 && (size_t)basicsize > size) {
jpayne@68 25408 PyOS_snprintf(warning, sizeof(warning),
jpayne@68 25409 "%s.%s size changed, may indicate binary incompatibility. "
jpayne@68 25410 "Expected %zd from C header, got %zd from PyObject",
jpayne@68 25411 module_name, class_name, size, basicsize);
jpayne@68 25412 if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
jpayne@68 25413 }
jpayne@68 25414 return (PyTypeObject *)result;
jpayne@68 25415 bad:
jpayne@68 25416 Py_XDECREF(result);
jpayne@68 25417 return NULL;
jpayne@68 25418 }
jpayne@68 25419 #endif
jpayne@68 25420
jpayne@68 25421 /* Import */
jpayne@68 25422 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
jpayne@68 25423 PyObject *module = 0;
jpayne@68 25424 PyObject *empty_dict = 0;
jpayne@68 25425 PyObject *empty_list = 0;
jpayne@68 25426 #if PY_MAJOR_VERSION < 3
jpayne@68 25427 PyObject *py_import;
jpayne@68 25428 py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
jpayne@68 25429 if (unlikely(!py_import))
jpayne@68 25430 goto bad;
jpayne@68 25431 if (!from_list) {
jpayne@68 25432 empty_list = PyList_New(0);
jpayne@68 25433 if (unlikely(!empty_list))
jpayne@68 25434 goto bad;
jpayne@68 25435 from_list = empty_list;
jpayne@68 25436 }
jpayne@68 25437 #endif
jpayne@68 25438 empty_dict = PyDict_New();
jpayne@68 25439 if (unlikely(!empty_dict))
jpayne@68 25440 goto bad;
jpayne@68 25441 {
jpayne@68 25442 #if PY_MAJOR_VERSION >= 3
jpayne@68 25443 if (level == -1) {
jpayne@68 25444 if (strchr(__Pyx_MODULE_NAME, '.') != NULL) {
jpayne@68 25445 module = PyImport_ImportModuleLevelObject(
jpayne@68 25446 name, __pyx_d, empty_dict, from_list, 1);
jpayne@68 25447 if (unlikely(!module)) {
jpayne@68 25448 if (unlikely(!PyErr_ExceptionMatches(PyExc_ImportError)))
jpayne@68 25449 goto bad;
jpayne@68 25450 PyErr_Clear();
jpayne@68 25451 }
jpayne@68 25452 }
jpayne@68 25453 level = 0;
jpayne@68 25454 }
jpayne@68 25455 #endif
jpayne@68 25456 if (!module) {
jpayne@68 25457 #if PY_MAJOR_VERSION < 3
jpayne@68 25458 PyObject *py_level = PyInt_FromLong(level);
jpayne@68 25459 if (unlikely(!py_level))
jpayne@68 25460 goto bad;
jpayne@68 25461 module = PyObject_CallFunctionObjArgs(py_import,
jpayne@68 25462 name, __pyx_d, empty_dict, from_list, py_level, (PyObject *)NULL);
jpayne@68 25463 Py_DECREF(py_level);
jpayne@68 25464 #else
jpayne@68 25465 module = PyImport_ImportModuleLevelObject(
jpayne@68 25466 name, __pyx_d, empty_dict, from_list, level);
jpayne@68 25467 #endif
jpayne@68 25468 }
jpayne@68 25469 }
jpayne@68 25470 bad:
jpayne@68 25471 Py_XDECREF(empty_dict);
jpayne@68 25472 Py_XDECREF(empty_list);
jpayne@68 25473 #if PY_MAJOR_VERSION < 3
jpayne@68 25474 Py_XDECREF(py_import);
jpayne@68 25475 #endif
jpayne@68 25476 return module;
jpayne@68 25477 }
jpayne@68 25478
jpayne@68 25479 /* ImportDottedModule */
jpayne@68 25480 #if PY_MAJOR_VERSION >= 3
jpayne@68 25481 static PyObject *__Pyx__ImportDottedModule_Error(PyObject *name, PyObject *parts_tuple, Py_ssize_t count) {
jpayne@68 25482 PyObject *partial_name = NULL, *slice = NULL, *sep = NULL;
jpayne@68 25483 if (unlikely(PyErr_Occurred())) {
jpayne@68 25484 PyErr_Clear();
jpayne@68 25485 }
jpayne@68 25486 if (likely(PyTuple_GET_SIZE(parts_tuple) == count)) {
jpayne@68 25487 partial_name = name;
jpayne@68 25488 } else {
jpayne@68 25489 slice = PySequence_GetSlice(parts_tuple, 0, count);
jpayne@68 25490 if (unlikely(!slice))
jpayne@68 25491 goto bad;
jpayne@68 25492 sep = PyUnicode_FromStringAndSize(".", 1);
jpayne@68 25493 if (unlikely(!sep))
jpayne@68 25494 goto bad;
jpayne@68 25495 partial_name = PyUnicode_Join(sep, slice);
jpayne@68 25496 }
jpayne@68 25497 PyErr_Format(
jpayne@68 25498 #if PY_MAJOR_VERSION < 3
jpayne@68 25499 PyExc_ImportError,
jpayne@68 25500 "No module named '%s'", PyString_AS_STRING(partial_name));
jpayne@68 25501 #else
jpayne@68 25502 #if PY_VERSION_HEX >= 0x030600B1
jpayne@68 25503 PyExc_ModuleNotFoundError,
jpayne@68 25504 #else
jpayne@68 25505 PyExc_ImportError,
jpayne@68 25506 #endif
jpayne@68 25507 "No module named '%U'", partial_name);
jpayne@68 25508 #endif
jpayne@68 25509 bad:
jpayne@68 25510 Py_XDECREF(sep);
jpayne@68 25511 Py_XDECREF(slice);
jpayne@68 25512 Py_XDECREF(partial_name);
jpayne@68 25513 return NULL;
jpayne@68 25514 }
jpayne@68 25515 #endif
jpayne@68 25516 #if PY_MAJOR_VERSION >= 3
jpayne@68 25517 static PyObject *__Pyx__ImportDottedModule_Lookup(PyObject *name) {
jpayne@68 25518 PyObject *imported_module;
jpayne@68 25519 #if PY_VERSION_HEX < 0x030700A1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030400)
jpayne@68 25520 PyObject *modules = PyImport_GetModuleDict();
jpayne@68 25521 if (unlikely(!modules))
jpayne@68 25522 return NULL;
jpayne@68 25523 imported_module = __Pyx_PyDict_GetItemStr(modules, name);
jpayne@68 25524 Py_XINCREF(imported_module);
jpayne@68 25525 #else
jpayne@68 25526 imported_module = PyImport_GetModule(name);
jpayne@68 25527 #endif
jpayne@68 25528 return imported_module;
jpayne@68 25529 }
jpayne@68 25530 #endif
jpayne@68 25531 #if PY_MAJOR_VERSION >= 3
jpayne@68 25532 static PyObject *__Pyx_ImportDottedModule_WalkParts(PyObject *module, PyObject *name, PyObject *parts_tuple) {
jpayne@68 25533 Py_ssize_t i, nparts;
jpayne@68 25534 nparts = PyTuple_GET_SIZE(parts_tuple);
jpayne@68 25535 for (i=1; i < nparts && module; i++) {
jpayne@68 25536 PyObject *part, *submodule;
jpayne@68 25537 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
jpayne@68 25538 part = PyTuple_GET_ITEM(parts_tuple, i);
jpayne@68 25539 #else
jpayne@68 25540 part = PySequence_ITEM(parts_tuple, i);
jpayne@68 25541 #endif
jpayne@68 25542 submodule = __Pyx_PyObject_GetAttrStrNoError(module, part);
jpayne@68 25543 #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS)
jpayne@68 25544 Py_DECREF(part);
jpayne@68 25545 #endif
jpayne@68 25546 Py_DECREF(module);
jpayne@68 25547 module = submodule;
jpayne@68 25548 }
jpayne@68 25549 if (unlikely(!module)) {
jpayne@68 25550 return __Pyx__ImportDottedModule_Error(name, parts_tuple, i);
jpayne@68 25551 }
jpayne@68 25552 return module;
jpayne@68 25553 }
jpayne@68 25554 #endif
jpayne@68 25555 static PyObject *__Pyx__ImportDottedModule(PyObject *name, PyObject *parts_tuple) {
jpayne@68 25556 #if PY_MAJOR_VERSION < 3
jpayne@68 25557 PyObject *module, *from_list, *star = __pyx_n_s__58;
jpayne@68 25558 CYTHON_UNUSED_VAR(parts_tuple);
jpayne@68 25559 from_list = PyList_New(1);
jpayne@68 25560 if (unlikely(!from_list))
jpayne@68 25561 return NULL;
jpayne@68 25562 Py_INCREF(star);
jpayne@68 25563 PyList_SET_ITEM(from_list, 0, star);
jpayne@68 25564 module = __Pyx_Import(name, from_list, 0);
jpayne@68 25565 Py_DECREF(from_list);
jpayne@68 25566 return module;
jpayne@68 25567 #else
jpayne@68 25568 PyObject *imported_module;
jpayne@68 25569 PyObject *module = __Pyx_Import(name, NULL, 0);
jpayne@68 25570 if (!parts_tuple || unlikely(!module))
jpayne@68 25571 return module;
jpayne@68 25572 imported_module = __Pyx__ImportDottedModule_Lookup(name);
jpayne@68 25573 if (likely(imported_module)) {
jpayne@68 25574 Py_DECREF(module);
jpayne@68 25575 return imported_module;
jpayne@68 25576 }
jpayne@68 25577 PyErr_Clear();
jpayne@68 25578 return __Pyx_ImportDottedModule_WalkParts(module, name, parts_tuple);
jpayne@68 25579 #endif
jpayne@68 25580 }
jpayne@68 25581 static PyObject *__Pyx_ImportDottedModule(PyObject *name, PyObject *parts_tuple) {
jpayne@68 25582 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030400B1
jpayne@68 25583 PyObject *module = __Pyx__ImportDottedModule_Lookup(name);
jpayne@68 25584 if (likely(module)) {
jpayne@68 25585 PyObject *spec = __Pyx_PyObject_GetAttrStrNoError(module, __pyx_n_s_spec);
jpayne@68 25586 if (likely(spec)) {
jpayne@68 25587 PyObject *unsafe = __Pyx_PyObject_GetAttrStrNoError(spec, __pyx_n_s_initializing);
jpayne@68 25588 if (likely(!unsafe || !__Pyx_PyObject_IsTrue(unsafe))) {
jpayne@68 25589 Py_DECREF(spec);
jpayne@68 25590 spec = NULL;
jpayne@68 25591 }
jpayne@68 25592 Py_XDECREF(unsafe);
jpayne@68 25593 }
jpayne@68 25594 if (likely(!spec)) {
jpayne@68 25595 PyErr_Clear();
jpayne@68 25596 return module;
jpayne@68 25597 }
jpayne@68 25598 Py_DECREF(spec);
jpayne@68 25599 Py_DECREF(module);
jpayne@68 25600 } else if (PyErr_Occurred()) {
jpayne@68 25601 PyErr_Clear();
jpayne@68 25602 }
jpayne@68 25603 #endif
jpayne@68 25604 return __Pyx__ImportDottedModule(name, parts_tuple);
jpayne@68 25605 }
jpayne@68 25606
jpayne@68 25607 /* ImportFrom */
jpayne@68 25608 static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) {
jpayne@68 25609 PyObject* value = __Pyx_PyObject_GetAttrStr(module, name);
jpayne@68 25610 if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) {
jpayne@68 25611 const char* module_name_str = 0;
jpayne@68 25612 PyObject* module_name = 0;
jpayne@68 25613 PyObject* module_dot = 0;
jpayne@68 25614 PyObject* full_name = 0;
jpayne@68 25615 PyErr_Clear();
jpayne@68 25616 module_name_str = PyModule_GetName(module);
jpayne@68 25617 if (unlikely(!module_name_str)) { goto modbad; }
jpayne@68 25618 module_name = PyUnicode_FromString(module_name_str);
jpayne@68 25619 if (unlikely(!module_name)) { goto modbad; }
jpayne@68 25620 module_dot = PyUnicode_Concat(module_name, __pyx_kp_u__59);
jpayne@68 25621 if (unlikely(!module_dot)) { goto modbad; }
jpayne@68 25622 full_name = PyUnicode_Concat(module_dot, name);
jpayne@68 25623 if (unlikely(!full_name)) { goto modbad; }
jpayne@68 25624 #if PY_VERSION_HEX < 0x030700A1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030400)
jpayne@68 25625 {
jpayne@68 25626 PyObject *modules = PyImport_GetModuleDict();
jpayne@68 25627 if (unlikely(!modules))
jpayne@68 25628 goto modbad;
jpayne@68 25629 value = PyObject_GetItem(modules, full_name);
jpayne@68 25630 }
jpayne@68 25631 #else
jpayne@68 25632 value = PyImport_GetModule(full_name);
jpayne@68 25633 #endif
jpayne@68 25634 modbad:
jpayne@68 25635 Py_XDECREF(full_name);
jpayne@68 25636 Py_XDECREF(module_dot);
jpayne@68 25637 Py_XDECREF(module_name);
jpayne@68 25638 }
jpayne@68 25639 if (unlikely(!value)) {
jpayne@68 25640 PyErr_Format(PyExc_ImportError,
jpayne@68 25641 #if PY_MAJOR_VERSION < 3
jpayne@68 25642 "cannot import name %.230s", PyString_AS_STRING(name));
jpayne@68 25643 #else
jpayne@68 25644 "cannot import name %S", name);
jpayne@68 25645 #endif
jpayne@68 25646 }
jpayne@68 25647 return value;
jpayne@68 25648 }
jpayne@68 25649
jpayne@68 25650 /* FetchSharedCythonModule */
jpayne@68 25651 static PyObject *__Pyx_FetchSharedCythonABIModule(void) {
jpayne@68 25652 return __Pyx_PyImport_AddModuleRef((char*) __PYX_ABI_MODULE_NAME);
jpayne@68 25653 }
jpayne@68 25654
jpayne@68 25655 /* FetchCommonType */
jpayne@68 25656 static int __Pyx_VerifyCachedType(PyObject *cached_type,
jpayne@68 25657 const char *name,
jpayne@68 25658 Py_ssize_t basicsize,
jpayne@68 25659 Py_ssize_t expected_basicsize) {
jpayne@68 25660 if (!PyType_Check(cached_type)) {
jpayne@68 25661 PyErr_Format(PyExc_TypeError,
jpayne@68 25662 "Shared Cython type %.200s is not a type object", name);
jpayne@68 25663 return -1;
jpayne@68 25664 }
jpayne@68 25665 if (basicsize != expected_basicsize) {
jpayne@68 25666 PyErr_Format(PyExc_TypeError,
jpayne@68 25667 "Shared Cython type %.200s has the wrong size, try recompiling",
jpayne@68 25668 name);
jpayne@68 25669 return -1;
jpayne@68 25670 }
jpayne@68 25671 return 0;
jpayne@68 25672 }
jpayne@68 25673 #if !CYTHON_USE_TYPE_SPECS
jpayne@68 25674 static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) {
jpayne@68 25675 PyObject* abi_module;
jpayne@68 25676 const char* object_name;
jpayne@68 25677 PyTypeObject *cached_type = NULL;
jpayne@68 25678 abi_module = __Pyx_FetchSharedCythonABIModule();
jpayne@68 25679 if (!abi_module) return NULL;
jpayne@68 25680 object_name = strrchr(type->tp_name, '.');
jpayne@68 25681 object_name = object_name ? object_name+1 : type->tp_name;
jpayne@68 25682 cached_type = (PyTypeObject*) PyObject_GetAttrString(abi_module, object_name);
jpayne@68 25683 if (cached_type) {
jpayne@68 25684 if (__Pyx_VerifyCachedType(
jpayne@68 25685 (PyObject *)cached_type,
jpayne@68 25686 object_name,
jpayne@68 25687 cached_type->tp_basicsize,
jpayne@68 25688 type->tp_basicsize) < 0) {
jpayne@68 25689 goto bad;
jpayne@68 25690 }
jpayne@68 25691 goto done;
jpayne@68 25692 }
jpayne@68 25693 if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad;
jpayne@68 25694 PyErr_Clear();
jpayne@68 25695 if (PyType_Ready(type) < 0) goto bad;
jpayne@68 25696 if (PyObject_SetAttrString(abi_module, object_name, (PyObject *)type) < 0)
jpayne@68 25697 goto bad;
jpayne@68 25698 Py_INCREF(type);
jpayne@68 25699 cached_type = type;
jpayne@68 25700 done:
jpayne@68 25701 Py_DECREF(abi_module);
jpayne@68 25702 return cached_type;
jpayne@68 25703 bad:
jpayne@68 25704 Py_XDECREF(cached_type);
jpayne@68 25705 cached_type = NULL;
jpayne@68 25706 goto done;
jpayne@68 25707 }
jpayne@68 25708 #else
jpayne@68 25709 static PyTypeObject *__Pyx_FetchCommonTypeFromSpec(PyObject *module, PyType_Spec *spec, PyObject *bases) {
jpayne@68 25710 PyObject *abi_module, *cached_type = NULL;
jpayne@68 25711 const char* object_name = strrchr(spec->name, '.');
jpayne@68 25712 object_name = object_name ? object_name+1 : spec->name;
jpayne@68 25713 abi_module = __Pyx_FetchSharedCythonABIModule();
jpayne@68 25714 if (!abi_module) return NULL;
jpayne@68 25715 cached_type = PyObject_GetAttrString(abi_module, object_name);
jpayne@68 25716 if (cached_type) {
jpayne@68 25717 Py_ssize_t basicsize;
jpayne@68 25718 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 25719 PyObject *py_basicsize;
jpayne@68 25720 py_basicsize = PyObject_GetAttrString(cached_type, "__basicsize__");
jpayne@68 25721 if (unlikely(!py_basicsize)) goto bad;
jpayne@68 25722 basicsize = PyLong_AsSsize_t(py_basicsize);
jpayne@68 25723 Py_DECREF(py_basicsize);
jpayne@68 25724 py_basicsize = 0;
jpayne@68 25725 if (unlikely(basicsize == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad;
jpayne@68 25726 #else
jpayne@68 25727 basicsize = likely(PyType_Check(cached_type)) ? ((PyTypeObject*) cached_type)->tp_basicsize : -1;
jpayne@68 25728 #endif
jpayne@68 25729 if (__Pyx_VerifyCachedType(
jpayne@68 25730 cached_type,
jpayne@68 25731 object_name,
jpayne@68 25732 basicsize,
jpayne@68 25733 spec->basicsize) < 0) {
jpayne@68 25734 goto bad;
jpayne@68 25735 }
jpayne@68 25736 goto done;
jpayne@68 25737 }
jpayne@68 25738 if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad;
jpayne@68 25739 PyErr_Clear();
jpayne@68 25740 CYTHON_UNUSED_VAR(module);
jpayne@68 25741 cached_type = __Pyx_PyType_FromModuleAndSpec(abi_module, spec, bases);
jpayne@68 25742 if (unlikely(!cached_type)) goto bad;
jpayne@68 25743 if (unlikely(__Pyx_fix_up_extension_type_from_spec(spec, (PyTypeObject *) cached_type) < 0)) goto bad;
jpayne@68 25744 if (PyObject_SetAttrString(abi_module, object_name, cached_type) < 0) goto bad;
jpayne@68 25745 done:
jpayne@68 25746 Py_DECREF(abi_module);
jpayne@68 25747 assert(cached_type == NULL || PyType_Check(cached_type));
jpayne@68 25748 return (PyTypeObject *) cached_type;
jpayne@68 25749 bad:
jpayne@68 25750 Py_XDECREF(cached_type);
jpayne@68 25751 cached_type = NULL;
jpayne@68 25752 goto done;
jpayne@68 25753 }
jpayne@68 25754 #endif
jpayne@68 25755
jpayne@68 25756 /* PyVectorcallFastCallDict */
jpayne@68 25757 #if CYTHON_METH_FASTCALL
jpayne@68 25758 static PyObject *__Pyx_PyVectorcall_FastCallDict_kw(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw)
jpayne@68 25759 {
jpayne@68 25760 PyObject *res = NULL;
jpayne@68 25761 PyObject *kwnames;
jpayne@68 25762 PyObject **newargs;
jpayne@68 25763 PyObject **kwvalues;
jpayne@68 25764 Py_ssize_t i, pos;
jpayne@68 25765 size_t j;
jpayne@68 25766 PyObject *key, *value;
jpayne@68 25767 unsigned long keys_are_strings;
jpayne@68 25768 Py_ssize_t nkw = PyDict_GET_SIZE(kw);
jpayne@68 25769 newargs = (PyObject **)PyMem_Malloc((nargs + (size_t)nkw) * sizeof(args[0]));
jpayne@68 25770 if (unlikely(newargs == NULL)) {
jpayne@68 25771 PyErr_NoMemory();
jpayne@68 25772 return NULL;
jpayne@68 25773 }
jpayne@68 25774 for (j = 0; j < nargs; j++) newargs[j] = args[j];
jpayne@68 25775 kwnames = PyTuple_New(nkw);
jpayne@68 25776 if (unlikely(kwnames == NULL)) {
jpayne@68 25777 PyMem_Free(newargs);
jpayne@68 25778 return NULL;
jpayne@68 25779 }
jpayne@68 25780 kwvalues = newargs + nargs;
jpayne@68 25781 pos = i = 0;
jpayne@68 25782 keys_are_strings = Py_TPFLAGS_UNICODE_SUBCLASS;
jpayne@68 25783 while (PyDict_Next(kw, &pos, &key, &value)) {
jpayne@68 25784 keys_are_strings &= Py_TYPE(key)->tp_flags;
jpayne@68 25785 Py_INCREF(key);
jpayne@68 25786 Py_INCREF(value);
jpayne@68 25787 PyTuple_SET_ITEM(kwnames, i, key);
jpayne@68 25788 kwvalues[i] = value;
jpayne@68 25789 i++;
jpayne@68 25790 }
jpayne@68 25791 if (unlikely(!keys_are_strings)) {
jpayne@68 25792 PyErr_SetString(PyExc_TypeError, "keywords must be strings");
jpayne@68 25793 goto cleanup;
jpayne@68 25794 }
jpayne@68 25795 res = vc(func, newargs, nargs, kwnames);
jpayne@68 25796 cleanup:
jpayne@68 25797 Py_DECREF(kwnames);
jpayne@68 25798 for (i = 0; i < nkw; i++)
jpayne@68 25799 Py_DECREF(kwvalues[i]);
jpayne@68 25800 PyMem_Free(newargs);
jpayne@68 25801 return res;
jpayne@68 25802 }
jpayne@68 25803 static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw)
jpayne@68 25804 {
jpayne@68 25805 if (likely(kw == NULL) || PyDict_GET_SIZE(kw) == 0) {
jpayne@68 25806 return vc(func, args, nargs, NULL);
jpayne@68 25807 }
jpayne@68 25808 return __Pyx_PyVectorcall_FastCallDict_kw(func, vc, args, nargs, kw);
jpayne@68 25809 }
jpayne@68 25810 #endif
jpayne@68 25811
jpayne@68 25812 /* CythonFunctionShared */
jpayne@68 25813 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 25814 static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) {
jpayne@68 25815 if (__Pyx_CyFunction_Check(func)) {
jpayne@68 25816 return PyCFunction_GetFunction(((__pyx_CyFunctionObject*)func)->func) == (PyCFunction) cfunc;
jpayne@68 25817 } else if (PyCFunction_Check(func)) {
jpayne@68 25818 return PyCFunction_GetFunction(func) == (PyCFunction) cfunc;
jpayne@68 25819 }
jpayne@68 25820 return 0;
jpayne@68 25821 }
jpayne@68 25822 #else
jpayne@68 25823 static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) {
jpayne@68 25824 return __Pyx_CyOrPyCFunction_Check(func) && __Pyx_CyOrPyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc;
jpayne@68 25825 }
jpayne@68 25826 #endif
jpayne@68 25827 static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj) {
jpayne@68 25828 #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 25829 __Pyx_Py_XDECREF_SET(
jpayne@68 25830 __Pyx_CyFunction_GetClassObj(f),
jpayne@68 25831 ((classobj) ? __Pyx_NewRef(classobj) : NULL));
jpayne@68 25832 #else
jpayne@68 25833 __Pyx_Py_XDECREF_SET(
jpayne@68 25834 ((PyCMethodObject *) (f))->mm_class,
jpayne@68 25835 (PyTypeObject*)((classobj) ? __Pyx_NewRef(classobj) : NULL));
jpayne@68 25836 #endif
jpayne@68 25837 }
jpayne@68 25838 static PyObject *
jpayne@68 25839 __Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, void *closure)
jpayne@68 25840 {
jpayne@68 25841 CYTHON_UNUSED_VAR(closure);
jpayne@68 25842 if (unlikely(op->func_doc == NULL)) {
jpayne@68 25843 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 25844 op->func_doc = PyObject_GetAttrString(op->func, "__doc__");
jpayne@68 25845 if (unlikely(!op->func_doc)) return NULL;
jpayne@68 25846 #else
jpayne@68 25847 if (((PyCFunctionObject*)op)->m_ml->ml_doc) {
jpayne@68 25848 #if PY_MAJOR_VERSION >= 3
jpayne@68 25849 op->func_doc = PyUnicode_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc);
jpayne@68 25850 #else
jpayne@68 25851 op->func_doc = PyString_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc);
jpayne@68 25852 #endif
jpayne@68 25853 if (unlikely(op->func_doc == NULL))
jpayne@68 25854 return NULL;
jpayne@68 25855 } else {
jpayne@68 25856 Py_INCREF(Py_None);
jpayne@68 25857 return Py_None;
jpayne@68 25858 }
jpayne@68 25859 #endif
jpayne@68 25860 }
jpayne@68 25861 Py_INCREF(op->func_doc);
jpayne@68 25862 return op->func_doc;
jpayne@68 25863 }
jpayne@68 25864 static int
jpayne@68 25865 __Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value, void *context)
jpayne@68 25866 {
jpayne@68 25867 CYTHON_UNUSED_VAR(context);
jpayne@68 25868 if (value == NULL) {
jpayne@68 25869 value = Py_None;
jpayne@68 25870 }
jpayne@68 25871 Py_INCREF(value);
jpayne@68 25872 __Pyx_Py_XDECREF_SET(op->func_doc, value);
jpayne@68 25873 return 0;
jpayne@68 25874 }
jpayne@68 25875 static PyObject *
jpayne@68 25876 __Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op, void *context)
jpayne@68 25877 {
jpayne@68 25878 CYTHON_UNUSED_VAR(context);
jpayne@68 25879 if (unlikely(op->func_name == NULL)) {
jpayne@68 25880 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 25881 op->func_name = PyObject_GetAttrString(op->func, "__name__");
jpayne@68 25882 #elif PY_MAJOR_VERSION >= 3
jpayne@68 25883 op->func_name = PyUnicode_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name);
jpayne@68 25884 #else
jpayne@68 25885 op->func_name = PyString_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name);
jpayne@68 25886 #endif
jpayne@68 25887 if (unlikely(op->func_name == NULL))
jpayne@68 25888 return NULL;
jpayne@68 25889 }
jpayne@68 25890 Py_INCREF(op->func_name);
jpayne@68 25891 return op->func_name;
jpayne@68 25892 }
jpayne@68 25893 static int
jpayne@68 25894 __Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value, void *context)
jpayne@68 25895 {
jpayne@68 25896 CYTHON_UNUSED_VAR(context);
jpayne@68 25897 #if PY_MAJOR_VERSION >= 3
jpayne@68 25898 if (unlikely(value == NULL || !PyUnicode_Check(value)))
jpayne@68 25899 #else
jpayne@68 25900 if (unlikely(value == NULL || !PyString_Check(value)))
jpayne@68 25901 #endif
jpayne@68 25902 {
jpayne@68 25903 PyErr_SetString(PyExc_TypeError,
jpayne@68 25904 "__name__ must be set to a string object");
jpayne@68 25905 return -1;
jpayne@68 25906 }
jpayne@68 25907 Py_INCREF(value);
jpayne@68 25908 __Pyx_Py_XDECREF_SET(op->func_name, value);
jpayne@68 25909 return 0;
jpayne@68 25910 }
jpayne@68 25911 static PyObject *
jpayne@68 25912 __Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op, void *context)
jpayne@68 25913 {
jpayne@68 25914 CYTHON_UNUSED_VAR(context);
jpayne@68 25915 Py_INCREF(op->func_qualname);
jpayne@68 25916 return op->func_qualname;
jpayne@68 25917 }
jpayne@68 25918 static int
jpayne@68 25919 __Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value, void *context)
jpayne@68 25920 {
jpayne@68 25921 CYTHON_UNUSED_VAR(context);
jpayne@68 25922 #if PY_MAJOR_VERSION >= 3
jpayne@68 25923 if (unlikely(value == NULL || !PyUnicode_Check(value)))
jpayne@68 25924 #else
jpayne@68 25925 if (unlikely(value == NULL || !PyString_Check(value)))
jpayne@68 25926 #endif
jpayne@68 25927 {
jpayne@68 25928 PyErr_SetString(PyExc_TypeError,
jpayne@68 25929 "__qualname__ must be set to a string object");
jpayne@68 25930 return -1;
jpayne@68 25931 }
jpayne@68 25932 Py_INCREF(value);
jpayne@68 25933 __Pyx_Py_XDECREF_SET(op->func_qualname, value);
jpayne@68 25934 return 0;
jpayne@68 25935 }
jpayne@68 25936 static PyObject *
jpayne@68 25937 __Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op, void *context)
jpayne@68 25938 {
jpayne@68 25939 CYTHON_UNUSED_VAR(context);
jpayne@68 25940 if (unlikely(op->func_dict == NULL)) {
jpayne@68 25941 op->func_dict = PyDict_New();
jpayne@68 25942 if (unlikely(op->func_dict == NULL))
jpayne@68 25943 return NULL;
jpayne@68 25944 }
jpayne@68 25945 Py_INCREF(op->func_dict);
jpayne@68 25946 return op->func_dict;
jpayne@68 25947 }
jpayne@68 25948 static int
jpayne@68 25949 __Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value, void *context)
jpayne@68 25950 {
jpayne@68 25951 CYTHON_UNUSED_VAR(context);
jpayne@68 25952 if (unlikely(value == NULL)) {
jpayne@68 25953 PyErr_SetString(PyExc_TypeError,
jpayne@68 25954 "function's dictionary may not be deleted");
jpayne@68 25955 return -1;
jpayne@68 25956 }
jpayne@68 25957 if (unlikely(!PyDict_Check(value))) {
jpayne@68 25958 PyErr_SetString(PyExc_TypeError,
jpayne@68 25959 "setting function's dictionary to a non-dict");
jpayne@68 25960 return -1;
jpayne@68 25961 }
jpayne@68 25962 Py_INCREF(value);
jpayne@68 25963 __Pyx_Py_XDECREF_SET(op->func_dict, value);
jpayne@68 25964 return 0;
jpayne@68 25965 }
jpayne@68 25966 static PyObject *
jpayne@68 25967 __Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op, void *context)
jpayne@68 25968 {
jpayne@68 25969 CYTHON_UNUSED_VAR(context);
jpayne@68 25970 Py_INCREF(op->func_globals);
jpayne@68 25971 return op->func_globals;
jpayne@68 25972 }
jpayne@68 25973 static PyObject *
jpayne@68 25974 __Pyx_CyFunction_get_closure(__pyx_CyFunctionObject *op, void *context)
jpayne@68 25975 {
jpayne@68 25976 CYTHON_UNUSED_VAR(op);
jpayne@68 25977 CYTHON_UNUSED_VAR(context);
jpayne@68 25978 Py_INCREF(Py_None);
jpayne@68 25979 return Py_None;
jpayne@68 25980 }
jpayne@68 25981 static PyObject *
jpayne@68 25982 __Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op, void *context)
jpayne@68 25983 {
jpayne@68 25984 PyObject* result = (op->func_code) ? op->func_code : Py_None;
jpayne@68 25985 CYTHON_UNUSED_VAR(context);
jpayne@68 25986 Py_INCREF(result);
jpayne@68 25987 return result;
jpayne@68 25988 }
jpayne@68 25989 static int
jpayne@68 25990 __Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) {
jpayne@68 25991 int result = 0;
jpayne@68 25992 PyObject *res = op->defaults_getter((PyObject *) op);
jpayne@68 25993 if (unlikely(!res))
jpayne@68 25994 return -1;
jpayne@68 25995 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
jpayne@68 25996 op->defaults_tuple = PyTuple_GET_ITEM(res, 0);
jpayne@68 25997 Py_INCREF(op->defaults_tuple);
jpayne@68 25998 op->defaults_kwdict = PyTuple_GET_ITEM(res, 1);
jpayne@68 25999 Py_INCREF(op->defaults_kwdict);
jpayne@68 26000 #else
jpayne@68 26001 op->defaults_tuple = __Pyx_PySequence_ITEM(res, 0);
jpayne@68 26002 if (unlikely(!op->defaults_tuple)) result = -1;
jpayne@68 26003 else {
jpayne@68 26004 op->defaults_kwdict = __Pyx_PySequence_ITEM(res, 1);
jpayne@68 26005 if (unlikely(!op->defaults_kwdict)) result = -1;
jpayne@68 26006 }
jpayne@68 26007 #endif
jpayne@68 26008 Py_DECREF(res);
jpayne@68 26009 return result;
jpayne@68 26010 }
jpayne@68 26011 static int
jpayne@68 26012 __Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) {
jpayne@68 26013 CYTHON_UNUSED_VAR(context);
jpayne@68 26014 if (!value) {
jpayne@68 26015 value = Py_None;
jpayne@68 26016 } else if (unlikely(value != Py_None && !PyTuple_Check(value))) {
jpayne@68 26017 PyErr_SetString(PyExc_TypeError,
jpayne@68 26018 "__defaults__ must be set to a tuple object");
jpayne@68 26019 return -1;
jpayne@68 26020 }
jpayne@68 26021 PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__defaults__ will not "
jpayne@68 26022 "currently affect the values used in function calls", 1);
jpayne@68 26023 Py_INCREF(value);
jpayne@68 26024 __Pyx_Py_XDECREF_SET(op->defaults_tuple, value);
jpayne@68 26025 return 0;
jpayne@68 26026 }
jpayne@68 26027 static PyObject *
jpayne@68 26028 __Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op, void *context) {
jpayne@68 26029 PyObject* result = op->defaults_tuple;
jpayne@68 26030 CYTHON_UNUSED_VAR(context);
jpayne@68 26031 if (unlikely(!result)) {
jpayne@68 26032 if (op->defaults_getter) {
jpayne@68 26033 if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL;
jpayne@68 26034 result = op->defaults_tuple;
jpayne@68 26035 } else {
jpayne@68 26036 result = Py_None;
jpayne@68 26037 }
jpayne@68 26038 }
jpayne@68 26039 Py_INCREF(result);
jpayne@68 26040 return result;
jpayne@68 26041 }
jpayne@68 26042 static int
jpayne@68 26043 __Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) {
jpayne@68 26044 CYTHON_UNUSED_VAR(context);
jpayne@68 26045 if (!value) {
jpayne@68 26046 value = Py_None;
jpayne@68 26047 } else if (unlikely(value != Py_None && !PyDict_Check(value))) {
jpayne@68 26048 PyErr_SetString(PyExc_TypeError,
jpayne@68 26049 "__kwdefaults__ must be set to a dict object");
jpayne@68 26050 return -1;
jpayne@68 26051 }
jpayne@68 26052 PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__kwdefaults__ will not "
jpayne@68 26053 "currently affect the values used in function calls", 1);
jpayne@68 26054 Py_INCREF(value);
jpayne@68 26055 __Pyx_Py_XDECREF_SET(op->defaults_kwdict, value);
jpayne@68 26056 return 0;
jpayne@68 26057 }
jpayne@68 26058 static PyObject *
jpayne@68 26059 __Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op, void *context) {
jpayne@68 26060 PyObject* result = op->defaults_kwdict;
jpayne@68 26061 CYTHON_UNUSED_VAR(context);
jpayne@68 26062 if (unlikely(!result)) {
jpayne@68 26063 if (op->defaults_getter) {
jpayne@68 26064 if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL;
jpayne@68 26065 result = op->defaults_kwdict;
jpayne@68 26066 } else {
jpayne@68 26067 result = Py_None;
jpayne@68 26068 }
jpayne@68 26069 }
jpayne@68 26070 Py_INCREF(result);
jpayne@68 26071 return result;
jpayne@68 26072 }
jpayne@68 26073 static int
jpayne@68 26074 __Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value, void *context) {
jpayne@68 26075 CYTHON_UNUSED_VAR(context);
jpayne@68 26076 if (!value || value == Py_None) {
jpayne@68 26077 value = NULL;
jpayne@68 26078 } else if (unlikely(!PyDict_Check(value))) {
jpayne@68 26079 PyErr_SetString(PyExc_TypeError,
jpayne@68 26080 "__annotations__ must be set to a dict object");
jpayne@68 26081 return -1;
jpayne@68 26082 }
jpayne@68 26083 Py_XINCREF(value);
jpayne@68 26084 __Pyx_Py_XDECREF_SET(op->func_annotations, value);
jpayne@68 26085 return 0;
jpayne@68 26086 }
jpayne@68 26087 static PyObject *
jpayne@68 26088 __Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op, void *context) {
jpayne@68 26089 PyObject* result = op->func_annotations;
jpayne@68 26090 CYTHON_UNUSED_VAR(context);
jpayne@68 26091 if (unlikely(!result)) {
jpayne@68 26092 result = PyDict_New();
jpayne@68 26093 if (unlikely(!result)) return NULL;
jpayne@68 26094 op->func_annotations = result;
jpayne@68 26095 }
jpayne@68 26096 Py_INCREF(result);
jpayne@68 26097 return result;
jpayne@68 26098 }
jpayne@68 26099 static PyObject *
jpayne@68 26100 __Pyx_CyFunction_get_is_coroutine(__pyx_CyFunctionObject *op, void *context) {
jpayne@68 26101 int is_coroutine;
jpayne@68 26102 CYTHON_UNUSED_VAR(context);
jpayne@68 26103 if (op->func_is_coroutine) {
jpayne@68 26104 return __Pyx_NewRef(op->func_is_coroutine);
jpayne@68 26105 }
jpayne@68 26106 is_coroutine = op->flags & __Pyx_CYFUNCTION_COROUTINE;
jpayne@68 26107 #if PY_VERSION_HEX >= 0x03050000
jpayne@68 26108 if (is_coroutine) {
jpayne@68 26109 PyObject *module, *fromlist, *marker = __pyx_n_s_is_coroutine;
jpayne@68 26110 fromlist = PyList_New(1);
jpayne@68 26111 if (unlikely(!fromlist)) return NULL;
jpayne@68 26112 Py_INCREF(marker);
jpayne@68 26113 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 26114 PyList_SET_ITEM(fromlist, 0, marker);
jpayne@68 26115 #else
jpayne@68 26116 if (unlikely(PyList_SetItem(fromlist, 0, marker) < 0)) {
jpayne@68 26117 Py_DECREF(marker);
jpayne@68 26118 Py_DECREF(fromlist);
jpayne@68 26119 return NULL;
jpayne@68 26120 }
jpayne@68 26121 #endif
jpayne@68 26122 module = PyImport_ImportModuleLevelObject(__pyx_n_s_asyncio_coroutines, NULL, NULL, fromlist, 0);
jpayne@68 26123 Py_DECREF(fromlist);
jpayne@68 26124 if (unlikely(!module)) goto ignore;
jpayne@68 26125 op->func_is_coroutine = __Pyx_PyObject_GetAttrStr(module, marker);
jpayne@68 26126 Py_DECREF(module);
jpayne@68 26127 if (likely(op->func_is_coroutine)) {
jpayne@68 26128 return __Pyx_NewRef(op->func_is_coroutine);
jpayne@68 26129 }
jpayne@68 26130 ignore:
jpayne@68 26131 PyErr_Clear();
jpayne@68 26132 }
jpayne@68 26133 #endif
jpayne@68 26134 op->func_is_coroutine = __Pyx_PyBool_FromLong(is_coroutine);
jpayne@68 26135 return __Pyx_NewRef(op->func_is_coroutine);
jpayne@68 26136 }
jpayne@68 26137 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26138 static PyObject *
jpayne@68 26139 __Pyx_CyFunction_get_module(__pyx_CyFunctionObject *op, void *context) {
jpayne@68 26140 CYTHON_UNUSED_VAR(context);
jpayne@68 26141 return PyObject_GetAttrString(op->func, "__module__");
jpayne@68 26142 }
jpayne@68 26143 static int
jpayne@68 26144 __Pyx_CyFunction_set_module(__pyx_CyFunctionObject *op, PyObject* value, void *context) {
jpayne@68 26145 CYTHON_UNUSED_VAR(context);
jpayne@68 26146 return PyObject_SetAttrString(op->func, "__module__", value);
jpayne@68 26147 }
jpayne@68 26148 #endif
jpayne@68 26149 static PyGetSetDef __pyx_CyFunction_getsets[] = {
jpayne@68 26150 {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
jpayne@68 26151 {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
jpayne@68 26152 {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
jpayne@68 26153 {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
jpayne@68 26154 {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0},
jpayne@68 26155 {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
jpayne@68 26156 {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
jpayne@68 26157 {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
jpayne@68 26158 {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
jpayne@68 26159 {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
jpayne@68 26160 {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
jpayne@68 26161 {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
jpayne@68 26162 {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
jpayne@68 26163 {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0},
jpayne@68 26164 {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0},
jpayne@68 26165 {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0},
jpayne@68 26166 {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0},
jpayne@68 26167 {(char *) "_is_coroutine", (getter)__Pyx_CyFunction_get_is_coroutine, 0, 0, 0},
jpayne@68 26168 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26169 {"__module__", (getter)__Pyx_CyFunction_get_module, (setter)__Pyx_CyFunction_set_module, 0, 0},
jpayne@68 26170 #endif
jpayne@68 26171 {0, 0, 0, 0, 0}
jpayne@68 26172 };
jpayne@68 26173 static PyMemberDef __pyx_CyFunction_members[] = {
jpayne@68 26174 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26175 {(char *) "__module__", T_OBJECT, offsetof(PyCFunctionObject, m_module), 0, 0},
jpayne@68 26176 #endif
jpayne@68 26177 #if CYTHON_USE_TYPE_SPECS
jpayne@68 26178 {(char *) "__dictoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_dict), READONLY, 0},
jpayne@68 26179 #if CYTHON_METH_FASTCALL
jpayne@68 26180 #if CYTHON_BACKPORT_VECTORCALL
jpayne@68 26181 {(char *) "__vectorcalloffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_vectorcall), READONLY, 0},
jpayne@68 26182 #else
jpayne@68 26183 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26184 {(char *) "__vectorcalloffset__", T_PYSSIZET, offsetof(PyCFunctionObject, vectorcall), READONLY, 0},
jpayne@68 26185 #endif
jpayne@68 26186 #endif
jpayne@68 26187 #endif
jpayne@68 26188 #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26189 {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_weakreflist), READONLY, 0},
jpayne@68 26190 #else
jpayne@68 26191 {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(PyCFunctionObject, m_weakreflist), READONLY, 0},
jpayne@68 26192 #endif
jpayne@68 26193 #endif
jpayne@68 26194 {0, 0, 0, 0, 0}
jpayne@68 26195 };
jpayne@68 26196 static PyObject *
jpayne@68 26197 __Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, PyObject *args)
jpayne@68 26198 {
jpayne@68 26199 CYTHON_UNUSED_VAR(args);
jpayne@68 26200 #if PY_MAJOR_VERSION >= 3
jpayne@68 26201 Py_INCREF(m->func_qualname);
jpayne@68 26202 return m->func_qualname;
jpayne@68 26203 #else
jpayne@68 26204 return PyString_FromString(((PyCFunctionObject*)m)->m_ml->ml_name);
jpayne@68 26205 #endif
jpayne@68 26206 }
jpayne@68 26207 static PyMethodDef __pyx_CyFunction_methods[] = {
jpayne@68 26208 {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0},
jpayne@68 26209 {0, 0, 0, 0}
jpayne@68 26210 };
jpayne@68 26211 #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26212 #define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist)
jpayne@68 26213 #else
jpayne@68 26214 #define __Pyx_CyFunction_weakreflist(cyfunc) (((PyCFunctionObject*)cyfunc)->m_weakreflist)
jpayne@68 26215 #endif
jpayne@68 26216 static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject *op, PyMethodDef *ml, int flags, PyObject* qualname,
jpayne@68 26217 PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) {
jpayne@68 26218 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26219 PyCFunctionObject *cf = (PyCFunctionObject*) op;
jpayne@68 26220 #endif
jpayne@68 26221 if (unlikely(op == NULL))
jpayne@68 26222 return NULL;
jpayne@68 26223 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26224 op->func = PyCFunction_NewEx(ml, (PyObject*)op, module);
jpayne@68 26225 if (unlikely(!op->func)) return NULL;
jpayne@68 26226 #endif
jpayne@68 26227 op->flags = flags;
jpayne@68 26228 __Pyx_CyFunction_weakreflist(op) = NULL;
jpayne@68 26229 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26230 cf->m_ml = ml;
jpayne@68 26231 cf->m_self = (PyObject *) op;
jpayne@68 26232 #endif
jpayne@68 26233 Py_XINCREF(closure);
jpayne@68 26234 op->func_closure = closure;
jpayne@68 26235 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26236 Py_XINCREF(module);
jpayne@68 26237 cf->m_module = module;
jpayne@68 26238 #endif
jpayne@68 26239 op->func_dict = NULL;
jpayne@68 26240 op->func_name = NULL;
jpayne@68 26241 Py_INCREF(qualname);
jpayne@68 26242 op->func_qualname = qualname;
jpayne@68 26243 op->func_doc = NULL;
jpayne@68 26244 #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26245 op->func_classobj = NULL;
jpayne@68 26246 #else
jpayne@68 26247 ((PyCMethodObject*)op)->mm_class = NULL;
jpayne@68 26248 #endif
jpayne@68 26249 op->func_globals = globals;
jpayne@68 26250 Py_INCREF(op->func_globals);
jpayne@68 26251 Py_XINCREF(code);
jpayne@68 26252 op->func_code = code;
jpayne@68 26253 op->defaults_pyobjects = 0;
jpayne@68 26254 op->defaults_size = 0;
jpayne@68 26255 op->defaults = NULL;
jpayne@68 26256 op->defaults_tuple = NULL;
jpayne@68 26257 op->defaults_kwdict = NULL;
jpayne@68 26258 op->defaults_getter = NULL;
jpayne@68 26259 op->func_annotations = NULL;
jpayne@68 26260 op->func_is_coroutine = NULL;
jpayne@68 26261 #if CYTHON_METH_FASTCALL
jpayne@68 26262 switch (ml->ml_flags & (METH_VARARGS | METH_FASTCALL | METH_NOARGS | METH_O | METH_KEYWORDS | METH_METHOD)) {
jpayne@68 26263 case METH_NOARGS:
jpayne@68 26264 __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_NOARGS;
jpayne@68 26265 break;
jpayne@68 26266 case METH_O:
jpayne@68 26267 __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_O;
jpayne@68 26268 break;
jpayne@68 26269 case METH_METHOD | METH_FASTCALL | METH_KEYWORDS:
jpayne@68 26270 __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD;
jpayne@68 26271 break;
jpayne@68 26272 case METH_FASTCALL | METH_KEYWORDS:
jpayne@68 26273 __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS;
jpayne@68 26274 break;
jpayne@68 26275 case METH_VARARGS | METH_KEYWORDS:
jpayne@68 26276 __Pyx_CyFunction_func_vectorcall(op) = NULL;
jpayne@68 26277 break;
jpayne@68 26278 default:
jpayne@68 26279 PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction");
jpayne@68 26280 Py_DECREF(op);
jpayne@68 26281 return NULL;
jpayne@68 26282 }
jpayne@68 26283 #endif
jpayne@68 26284 return (PyObject *) op;
jpayne@68 26285 }
jpayne@68 26286 static int
jpayne@68 26287 __Pyx_CyFunction_clear(__pyx_CyFunctionObject *m)
jpayne@68 26288 {
jpayne@68 26289 Py_CLEAR(m->func_closure);
jpayne@68 26290 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26291 Py_CLEAR(m->func);
jpayne@68 26292 #else
jpayne@68 26293 Py_CLEAR(((PyCFunctionObject*)m)->m_module);
jpayne@68 26294 #endif
jpayne@68 26295 Py_CLEAR(m->func_dict);
jpayne@68 26296 Py_CLEAR(m->func_name);
jpayne@68 26297 Py_CLEAR(m->func_qualname);
jpayne@68 26298 Py_CLEAR(m->func_doc);
jpayne@68 26299 Py_CLEAR(m->func_globals);
jpayne@68 26300 Py_CLEAR(m->func_code);
jpayne@68 26301 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26302 #if PY_VERSION_HEX < 0x030900B1
jpayne@68 26303 Py_CLEAR(__Pyx_CyFunction_GetClassObj(m));
jpayne@68 26304 #else
jpayne@68 26305 {
jpayne@68 26306 PyObject *cls = (PyObject*) ((PyCMethodObject *) (m))->mm_class;
jpayne@68 26307 ((PyCMethodObject *) (m))->mm_class = NULL;
jpayne@68 26308 Py_XDECREF(cls);
jpayne@68 26309 }
jpayne@68 26310 #endif
jpayne@68 26311 #endif
jpayne@68 26312 Py_CLEAR(m->defaults_tuple);
jpayne@68 26313 Py_CLEAR(m->defaults_kwdict);
jpayne@68 26314 Py_CLEAR(m->func_annotations);
jpayne@68 26315 Py_CLEAR(m->func_is_coroutine);
jpayne@68 26316 if (m->defaults) {
jpayne@68 26317 PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
jpayne@68 26318 int i;
jpayne@68 26319 for (i = 0; i < m->defaults_pyobjects; i++)
jpayne@68 26320 Py_XDECREF(pydefaults[i]);
jpayne@68 26321 PyObject_Free(m->defaults);
jpayne@68 26322 m->defaults = NULL;
jpayne@68 26323 }
jpayne@68 26324 return 0;
jpayne@68 26325 }
jpayne@68 26326 static void __Pyx__CyFunction_dealloc(__pyx_CyFunctionObject *m)
jpayne@68 26327 {
jpayne@68 26328 if (__Pyx_CyFunction_weakreflist(m) != NULL)
jpayne@68 26329 PyObject_ClearWeakRefs((PyObject *) m);
jpayne@68 26330 __Pyx_CyFunction_clear(m);
jpayne@68 26331 __Pyx_PyHeapTypeObject_GC_Del(m);
jpayne@68 26332 }
jpayne@68 26333 static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m)
jpayne@68 26334 {
jpayne@68 26335 PyObject_GC_UnTrack(m);
jpayne@68 26336 __Pyx__CyFunction_dealloc(m);
jpayne@68 26337 }
jpayne@68 26338 static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg)
jpayne@68 26339 {
jpayne@68 26340 Py_VISIT(m->func_closure);
jpayne@68 26341 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26342 Py_VISIT(m->func);
jpayne@68 26343 #else
jpayne@68 26344 Py_VISIT(((PyCFunctionObject*)m)->m_module);
jpayne@68 26345 #endif
jpayne@68 26346 Py_VISIT(m->func_dict);
jpayne@68 26347 Py_VISIT(m->func_name);
jpayne@68 26348 Py_VISIT(m->func_qualname);
jpayne@68 26349 Py_VISIT(m->func_doc);
jpayne@68 26350 Py_VISIT(m->func_globals);
jpayne@68 26351 Py_VISIT(m->func_code);
jpayne@68 26352 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26353 Py_VISIT(__Pyx_CyFunction_GetClassObj(m));
jpayne@68 26354 #endif
jpayne@68 26355 Py_VISIT(m->defaults_tuple);
jpayne@68 26356 Py_VISIT(m->defaults_kwdict);
jpayne@68 26357 Py_VISIT(m->func_is_coroutine);
jpayne@68 26358 if (m->defaults) {
jpayne@68 26359 PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
jpayne@68 26360 int i;
jpayne@68 26361 for (i = 0; i < m->defaults_pyobjects; i++)
jpayne@68 26362 Py_VISIT(pydefaults[i]);
jpayne@68 26363 }
jpayne@68 26364 return 0;
jpayne@68 26365 }
jpayne@68 26366 static PyObject*
jpayne@68 26367 __Pyx_CyFunction_repr(__pyx_CyFunctionObject *op)
jpayne@68 26368 {
jpayne@68 26369 #if PY_MAJOR_VERSION >= 3
jpayne@68 26370 return PyUnicode_FromFormat("<cyfunction %U at %p>",
jpayne@68 26371 op->func_qualname, (void *)op);
jpayne@68 26372 #else
jpayne@68 26373 return PyString_FromFormat("<cyfunction %s at %p>",
jpayne@68 26374 PyString_AsString(op->func_qualname), (void *)op);
jpayne@68 26375 #endif
jpayne@68 26376 }
jpayne@68 26377 static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) {
jpayne@68 26378 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26379 PyObject *f = ((__pyx_CyFunctionObject*)func)->func;
jpayne@68 26380 PyObject *py_name = NULL;
jpayne@68 26381 PyCFunction meth;
jpayne@68 26382 int flags;
jpayne@68 26383 meth = PyCFunction_GetFunction(f);
jpayne@68 26384 if (unlikely(!meth)) return NULL;
jpayne@68 26385 flags = PyCFunction_GetFlags(f);
jpayne@68 26386 if (unlikely(flags < 0)) return NULL;
jpayne@68 26387 #else
jpayne@68 26388 PyCFunctionObject* f = (PyCFunctionObject*)func;
jpayne@68 26389 PyCFunction meth = f->m_ml->ml_meth;
jpayne@68 26390 int flags = f->m_ml->ml_flags;
jpayne@68 26391 #endif
jpayne@68 26392 Py_ssize_t size;
jpayne@68 26393 switch (flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) {
jpayne@68 26394 case METH_VARARGS:
jpayne@68 26395 if (likely(kw == NULL || PyDict_Size(kw) == 0))
jpayne@68 26396 return (*meth)(self, arg);
jpayne@68 26397 break;
jpayne@68 26398 case METH_VARARGS | METH_KEYWORDS:
jpayne@68 26399 return (*(PyCFunctionWithKeywords)(void*)meth)(self, arg, kw);
jpayne@68 26400 case METH_NOARGS:
jpayne@68 26401 if (likely(kw == NULL || PyDict_Size(kw) == 0)) {
jpayne@68 26402 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 26403 size = PyTuple_GET_SIZE(arg);
jpayne@68 26404 #else
jpayne@68 26405 size = PyTuple_Size(arg);
jpayne@68 26406 if (unlikely(size < 0)) return NULL;
jpayne@68 26407 #endif
jpayne@68 26408 if (likely(size == 0))
jpayne@68 26409 return (*meth)(self, NULL);
jpayne@68 26410 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26411 py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL);
jpayne@68 26412 if (!py_name) return NULL;
jpayne@68 26413 PyErr_Format(PyExc_TypeError,
jpayne@68 26414 "%.200S() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)",
jpayne@68 26415 py_name, size);
jpayne@68 26416 Py_DECREF(py_name);
jpayne@68 26417 #else
jpayne@68 26418 PyErr_Format(PyExc_TypeError,
jpayne@68 26419 "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)",
jpayne@68 26420 f->m_ml->ml_name, size);
jpayne@68 26421 #endif
jpayne@68 26422 return NULL;
jpayne@68 26423 }
jpayne@68 26424 break;
jpayne@68 26425 case METH_O:
jpayne@68 26426 if (likely(kw == NULL || PyDict_Size(kw) == 0)) {
jpayne@68 26427 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 26428 size = PyTuple_GET_SIZE(arg);
jpayne@68 26429 #else
jpayne@68 26430 size = PyTuple_Size(arg);
jpayne@68 26431 if (unlikely(size < 0)) return NULL;
jpayne@68 26432 #endif
jpayne@68 26433 if (likely(size == 1)) {
jpayne@68 26434 PyObject *result, *arg0;
jpayne@68 26435 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
jpayne@68 26436 arg0 = PyTuple_GET_ITEM(arg, 0);
jpayne@68 26437 #else
jpayne@68 26438 arg0 = __Pyx_PySequence_ITEM(arg, 0); if (unlikely(!arg0)) return NULL;
jpayne@68 26439 #endif
jpayne@68 26440 result = (*meth)(self, arg0);
jpayne@68 26441 #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS)
jpayne@68 26442 Py_DECREF(arg0);
jpayne@68 26443 #endif
jpayne@68 26444 return result;
jpayne@68 26445 }
jpayne@68 26446 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26447 py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL);
jpayne@68 26448 if (!py_name) return NULL;
jpayne@68 26449 PyErr_Format(PyExc_TypeError,
jpayne@68 26450 "%.200S() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)",
jpayne@68 26451 py_name, size);
jpayne@68 26452 Py_DECREF(py_name);
jpayne@68 26453 #else
jpayne@68 26454 PyErr_Format(PyExc_TypeError,
jpayne@68 26455 "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)",
jpayne@68 26456 f->m_ml->ml_name, size);
jpayne@68 26457 #endif
jpayne@68 26458 return NULL;
jpayne@68 26459 }
jpayne@68 26460 break;
jpayne@68 26461 default:
jpayne@68 26462 PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction");
jpayne@68 26463 return NULL;
jpayne@68 26464 }
jpayne@68 26465 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26466 py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL);
jpayne@68 26467 if (!py_name) return NULL;
jpayne@68 26468 PyErr_Format(PyExc_TypeError, "%.200S() takes no keyword arguments",
jpayne@68 26469 py_name);
jpayne@68 26470 Py_DECREF(py_name);
jpayne@68 26471 #else
jpayne@68 26472 PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments",
jpayne@68 26473 f->m_ml->ml_name);
jpayne@68 26474 #endif
jpayne@68 26475 return NULL;
jpayne@68 26476 }
jpayne@68 26477 static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) {
jpayne@68 26478 PyObject *self, *result;
jpayne@68 26479 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 26480 self = PyCFunction_GetSelf(((__pyx_CyFunctionObject*)func)->func);
jpayne@68 26481 if (unlikely(!self) && PyErr_Occurred()) return NULL;
jpayne@68 26482 #else
jpayne@68 26483 self = ((PyCFunctionObject*)func)->m_self;
jpayne@68 26484 #endif
jpayne@68 26485 result = __Pyx_CyFunction_CallMethod(func, self, arg, kw);
jpayne@68 26486 return result;
jpayne@68 26487 }
jpayne@68 26488 static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) {
jpayne@68 26489 PyObject *result;
jpayne@68 26490 __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func;
jpayne@68 26491 #if CYTHON_METH_FASTCALL
jpayne@68 26492 __pyx_vectorcallfunc vc = __Pyx_CyFunction_func_vectorcall(cyfunc);
jpayne@68 26493 if (vc) {
jpayne@68 26494 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 26495 return __Pyx_PyVectorcall_FastCallDict(func, vc, &PyTuple_GET_ITEM(args, 0), (size_t)PyTuple_GET_SIZE(args), kw);
jpayne@68 26496 #else
jpayne@68 26497 (void) &__Pyx_PyVectorcall_FastCallDict;
jpayne@68 26498 return PyVectorcall_Call(func, args, kw);
jpayne@68 26499 #endif
jpayne@68 26500 }
jpayne@68 26501 #endif
jpayne@68 26502 if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) {
jpayne@68 26503 Py_ssize_t argc;
jpayne@68 26504 PyObject *new_args;
jpayne@68 26505 PyObject *self;
jpayne@68 26506 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 26507 argc = PyTuple_GET_SIZE(args);
jpayne@68 26508 #else
jpayne@68 26509 argc = PyTuple_Size(args);
jpayne@68 26510 if (unlikely(!argc) < 0) return NULL;
jpayne@68 26511 #endif
jpayne@68 26512 new_args = PyTuple_GetSlice(args, 1, argc);
jpayne@68 26513 if (unlikely(!new_args))
jpayne@68 26514 return NULL;
jpayne@68 26515 self = PyTuple_GetItem(args, 0);
jpayne@68 26516 if (unlikely(!self)) {
jpayne@68 26517 Py_DECREF(new_args);
jpayne@68 26518 #if PY_MAJOR_VERSION > 2
jpayne@68 26519 PyErr_Format(PyExc_TypeError,
jpayne@68 26520 "unbound method %.200S() needs an argument",
jpayne@68 26521 cyfunc->func_qualname);
jpayne@68 26522 #else
jpayne@68 26523 PyErr_SetString(PyExc_TypeError,
jpayne@68 26524 "unbound method needs an argument");
jpayne@68 26525 #endif
jpayne@68 26526 return NULL;
jpayne@68 26527 }
jpayne@68 26528 result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw);
jpayne@68 26529 Py_DECREF(new_args);
jpayne@68 26530 } else {
jpayne@68 26531 result = __Pyx_CyFunction_Call(func, args, kw);
jpayne@68 26532 }
jpayne@68 26533 return result;
jpayne@68 26534 }
jpayne@68 26535 #if CYTHON_METH_FASTCALL
jpayne@68 26536 static CYTHON_INLINE int __Pyx_CyFunction_Vectorcall_CheckArgs(__pyx_CyFunctionObject *cyfunc, Py_ssize_t nargs, PyObject *kwnames)
jpayne@68 26537 {
jpayne@68 26538 int ret = 0;
jpayne@68 26539 if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) {
jpayne@68 26540 if (unlikely(nargs < 1)) {
jpayne@68 26541 PyErr_Format(PyExc_TypeError, "%.200s() needs an argument",
jpayne@68 26542 ((PyCFunctionObject*)cyfunc)->m_ml->ml_name);
jpayne@68 26543 return -1;
jpayne@68 26544 }
jpayne@68 26545 ret = 1;
jpayne@68 26546 }
jpayne@68 26547 if (unlikely(kwnames) && unlikely(PyTuple_GET_SIZE(kwnames))) {
jpayne@68 26548 PyErr_Format(PyExc_TypeError,
jpayne@68 26549 "%.200s() takes no keyword arguments", ((PyCFunctionObject*)cyfunc)->m_ml->ml_name);
jpayne@68 26550 return -1;
jpayne@68 26551 }
jpayne@68 26552 return ret;
jpayne@68 26553 }
jpayne@68 26554 static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames)
jpayne@68 26555 {
jpayne@68 26556 __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func;
jpayne@68 26557 PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml;
jpayne@68 26558 #if CYTHON_BACKPORT_VECTORCALL
jpayne@68 26559 Py_ssize_t nargs = (Py_ssize_t)nargsf;
jpayne@68 26560 #else
jpayne@68 26561 Py_ssize_t nargs = PyVectorcall_NARGS(nargsf);
jpayne@68 26562 #endif
jpayne@68 26563 PyObject *self;
jpayne@68 26564 switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) {
jpayne@68 26565 case 1:
jpayne@68 26566 self = args[0];
jpayne@68 26567 args += 1;
jpayne@68 26568 nargs -= 1;
jpayne@68 26569 break;
jpayne@68 26570 case 0:
jpayne@68 26571 self = ((PyCFunctionObject*)cyfunc)->m_self;
jpayne@68 26572 break;
jpayne@68 26573 default:
jpayne@68 26574 return NULL;
jpayne@68 26575 }
jpayne@68 26576 if (unlikely(nargs != 0)) {
jpayne@68 26577 PyErr_Format(PyExc_TypeError,
jpayne@68 26578 "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)",
jpayne@68 26579 def->ml_name, nargs);
jpayne@68 26580 return NULL;
jpayne@68 26581 }
jpayne@68 26582 return def->ml_meth(self, NULL);
jpayne@68 26583 }
jpayne@68 26584 static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames)
jpayne@68 26585 {
jpayne@68 26586 __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func;
jpayne@68 26587 PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml;
jpayne@68 26588 #if CYTHON_BACKPORT_VECTORCALL
jpayne@68 26589 Py_ssize_t nargs = (Py_ssize_t)nargsf;
jpayne@68 26590 #else
jpayne@68 26591 Py_ssize_t nargs = PyVectorcall_NARGS(nargsf);
jpayne@68 26592 #endif
jpayne@68 26593 PyObject *self;
jpayne@68 26594 switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) {
jpayne@68 26595 case 1:
jpayne@68 26596 self = args[0];
jpayne@68 26597 args += 1;
jpayne@68 26598 nargs -= 1;
jpayne@68 26599 break;
jpayne@68 26600 case 0:
jpayne@68 26601 self = ((PyCFunctionObject*)cyfunc)->m_self;
jpayne@68 26602 break;
jpayne@68 26603 default:
jpayne@68 26604 return NULL;
jpayne@68 26605 }
jpayne@68 26606 if (unlikely(nargs != 1)) {
jpayne@68 26607 PyErr_Format(PyExc_TypeError,
jpayne@68 26608 "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)",
jpayne@68 26609 def->ml_name, nargs);
jpayne@68 26610 return NULL;
jpayne@68 26611 }
jpayne@68 26612 return def->ml_meth(self, args[0]);
jpayne@68 26613 }
jpayne@68 26614 static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames)
jpayne@68 26615 {
jpayne@68 26616 __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func;
jpayne@68 26617 PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml;
jpayne@68 26618 #if CYTHON_BACKPORT_VECTORCALL
jpayne@68 26619 Py_ssize_t nargs = (Py_ssize_t)nargsf;
jpayne@68 26620 #else
jpayne@68 26621 Py_ssize_t nargs = PyVectorcall_NARGS(nargsf);
jpayne@68 26622 #endif
jpayne@68 26623 PyObject *self;
jpayne@68 26624 switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) {
jpayne@68 26625 case 1:
jpayne@68 26626 self = args[0];
jpayne@68 26627 args += 1;
jpayne@68 26628 nargs -= 1;
jpayne@68 26629 break;
jpayne@68 26630 case 0:
jpayne@68 26631 self = ((PyCFunctionObject*)cyfunc)->m_self;
jpayne@68 26632 break;
jpayne@68 26633 default:
jpayne@68 26634 return NULL;
jpayne@68 26635 }
jpayne@68 26636 return ((__Pyx_PyCFunctionFastWithKeywords)(void(*)(void))def->ml_meth)(self, args, nargs, kwnames);
jpayne@68 26637 }
jpayne@68 26638 static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames)
jpayne@68 26639 {
jpayne@68 26640 __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func;
jpayne@68 26641 PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml;
jpayne@68 26642 PyTypeObject *cls = (PyTypeObject *) __Pyx_CyFunction_GetClassObj(cyfunc);
jpayne@68 26643 #if CYTHON_BACKPORT_VECTORCALL
jpayne@68 26644 Py_ssize_t nargs = (Py_ssize_t)nargsf;
jpayne@68 26645 #else
jpayne@68 26646 Py_ssize_t nargs = PyVectorcall_NARGS(nargsf);
jpayne@68 26647 #endif
jpayne@68 26648 PyObject *self;
jpayne@68 26649 switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) {
jpayne@68 26650 case 1:
jpayne@68 26651 self = args[0];
jpayne@68 26652 args += 1;
jpayne@68 26653 nargs -= 1;
jpayne@68 26654 break;
jpayne@68 26655 case 0:
jpayne@68 26656 self = ((PyCFunctionObject*)cyfunc)->m_self;
jpayne@68 26657 break;
jpayne@68 26658 default:
jpayne@68 26659 return NULL;
jpayne@68 26660 }
jpayne@68 26661 return ((__Pyx_PyCMethod)(void(*)(void))def->ml_meth)(self, cls, args, (size_t)nargs, kwnames);
jpayne@68 26662 }
jpayne@68 26663 #endif
jpayne@68 26664 #if CYTHON_USE_TYPE_SPECS
jpayne@68 26665 static PyType_Slot __pyx_CyFunctionType_slots[] = {
jpayne@68 26666 {Py_tp_dealloc, (void *)__Pyx_CyFunction_dealloc},
jpayne@68 26667 {Py_tp_repr, (void *)__Pyx_CyFunction_repr},
jpayne@68 26668 {Py_tp_call, (void *)__Pyx_CyFunction_CallAsMethod},
jpayne@68 26669 {Py_tp_traverse, (void *)__Pyx_CyFunction_traverse},
jpayne@68 26670 {Py_tp_clear, (void *)__Pyx_CyFunction_clear},
jpayne@68 26671 {Py_tp_methods, (void *)__pyx_CyFunction_methods},
jpayne@68 26672 {Py_tp_members, (void *)__pyx_CyFunction_members},
jpayne@68 26673 {Py_tp_getset, (void *)__pyx_CyFunction_getsets},
jpayne@68 26674 {Py_tp_descr_get, (void *)__Pyx_PyMethod_New},
jpayne@68 26675 {0, 0},
jpayne@68 26676 };
jpayne@68 26677 static PyType_Spec __pyx_CyFunctionType_spec = {
jpayne@68 26678 __PYX_TYPE_MODULE_PREFIX "cython_function_or_method",
jpayne@68 26679 sizeof(__pyx_CyFunctionObject),
jpayne@68 26680 0,
jpayne@68 26681 #ifdef Py_TPFLAGS_METHOD_DESCRIPTOR
jpayne@68 26682 Py_TPFLAGS_METHOD_DESCRIPTOR |
jpayne@68 26683 #endif
jpayne@68 26684 #if (defined(_Py_TPFLAGS_HAVE_VECTORCALL) && CYTHON_METH_FASTCALL)
jpayne@68 26685 _Py_TPFLAGS_HAVE_VECTORCALL |
jpayne@68 26686 #endif
jpayne@68 26687 Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE,
jpayne@68 26688 __pyx_CyFunctionType_slots
jpayne@68 26689 };
jpayne@68 26690 #else
jpayne@68 26691 static PyTypeObject __pyx_CyFunctionType_type = {
jpayne@68 26692 PyVarObject_HEAD_INIT(0, 0)
jpayne@68 26693 __PYX_TYPE_MODULE_PREFIX "cython_function_or_method",
jpayne@68 26694 sizeof(__pyx_CyFunctionObject),
jpayne@68 26695 0,
jpayne@68 26696 (destructor) __Pyx_CyFunction_dealloc,
jpayne@68 26697 #if !CYTHON_METH_FASTCALL
jpayne@68 26698 0,
jpayne@68 26699 #elif CYTHON_BACKPORT_VECTORCALL
jpayne@68 26700 (printfunc)offsetof(__pyx_CyFunctionObject, func_vectorcall),
jpayne@68 26701 #else
jpayne@68 26702 offsetof(PyCFunctionObject, vectorcall),
jpayne@68 26703 #endif
jpayne@68 26704 0,
jpayne@68 26705 0,
jpayne@68 26706 #if PY_MAJOR_VERSION < 3
jpayne@68 26707 0,
jpayne@68 26708 #else
jpayne@68 26709 0,
jpayne@68 26710 #endif
jpayne@68 26711 (reprfunc) __Pyx_CyFunction_repr,
jpayne@68 26712 0,
jpayne@68 26713 0,
jpayne@68 26714 0,
jpayne@68 26715 0,
jpayne@68 26716 __Pyx_CyFunction_CallAsMethod,
jpayne@68 26717 0,
jpayne@68 26718 0,
jpayne@68 26719 0,
jpayne@68 26720 0,
jpayne@68 26721 #ifdef Py_TPFLAGS_METHOD_DESCRIPTOR
jpayne@68 26722 Py_TPFLAGS_METHOD_DESCRIPTOR |
jpayne@68 26723 #endif
jpayne@68 26724 #if defined(_Py_TPFLAGS_HAVE_VECTORCALL) && CYTHON_METH_FASTCALL
jpayne@68 26725 _Py_TPFLAGS_HAVE_VECTORCALL |
jpayne@68 26726 #endif
jpayne@68 26727 Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE,
jpayne@68 26728 0,
jpayne@68 26729 (traverseproc) __Pyx_CyFunction_traverse,
jpayne@68 26730 (inquiry) __Pyx_CyFunction_clear,
jpayne@68 26731 0,
jpayne@68 26732 #if PY_VERSION_HEX < 0x030500A0
jpayne@68 26733 offsetof(__pyx_CyFunctionObject, func_weakreflist),
jpayne@68 26734 #else
jpayne@68 26735 offsetof(PyCFunctionObject, m_weakreflist),
jpayne@68 26736 #endif
jpayne@68 26737 0,
jpayne@68 26738 0,
jpayne@68 26739 __pyx_CyFunction_methods,
jpayne@68 26740 __pyx_CyFunction_members,
jpayne@68 26741 __pyx_CyFunction_getsets,
jpayne@68 26742 0,
jpayne@68 26743 0,
jpayne@68 26744 __Pyx_PyMethod_New,
jpayne@68 26745 0,
jpayne@68 26746 offsetof(__pyx_CyFunctionObject, func_dict),
jpayne@68 26747 0,
jpayne@68 26748 0,
jpayne@68 26749 0,
jpayne@68 26750 0,
jpayne@68 26751 0,
jpayne@68 26752 0,
jpayne@68 26753 0,
jpayne@68 26754 0,
jpayne@68 26755 0,
jpayne@68 26756 0,
jpayne@68 26757 0,
jpayne@68 26758 0,
jpayne@68 26759 #if PY_VERSION_HEX >= 0x030400a1
jpayne@68 26760 0,
jpayne@68 26761 #endif
jpayne@68 26762 #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
jpayne@68 26763 0,
jpayne@68 26764 #endif
jpayne@68 26765 #if __PYX_NEED_TP_PRINT_SLOT
jpayne@68 26766 0,
jpayne@68 26767 #endif
jpayne@68 26768 #if PY_VERSION_HEX >= 0x030C0000
jpayne@68 26769 0,
jpayne@68 26770 #endif
jpayne@68 26771 #if PY_VERSION_HEX >= 0x030d00A4
jpayne@68 26772 0,
jpayne@68 26773 #endif
jpayne@68 26774 #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000
jpayne@68 26775 0,
jpayne@68 26776 #endif
jpayne@68 26777 };
jpayne@68 26778 #endif
jpayne@68 26779 static int __pyx_CyFunction_init(PyObject *module) {
jpayne@68 26780 #if CYTHON_USE_TYPE_SPECS
jpayne@68 26781 __pyx_CyFunctionType = __Pyx_FetchCommonTypeFromSpec(module, &__pyx_CyFunctionType_spec, NULL);
jpayne@68 26782 #else
jpayne@68 26783 CYTHON_UNUSED_VAR(module);
jpayne@68 26784 __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type);
jpayne@68 26785 #endif
jpayne@68 26786 if (unlikely(__pyx_CyFunctionType == NULL)) {
jpayne@68 26787 return -1;
jpayne@68 26788 }
jpayne@68 26789 return 0;
jpayne@68 26790 }
jpayne@68 26791 static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) {
jpayne@68 26792 __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
jpayne@68 26793 m->defaults = PyObject_Malloc(size);
jpayne@68 26794 if (unlikely(!m->defaults))
jpayne@68 26795 return PyErr_NoMemory();
jpayne@68 26796 memset(m->defaults, 0, size);
jpayne@68 26797 m->defaults_pyobjects = pyobjects;
jpayne@68 26798 m->defaults_size = size;
jpayne@68 26799 return m->defaults;
jpayne@68 26800 }
jpayne@68 26801 static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) {
jpayne@68 26802 __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
jpayne@68 26803 m->defaults_tuple = tuple;
jpayne@68 26804 Py_INCREF(tuple);
jpayne@68 26805 }
jpayne@68 26806 static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) {
jpayne@68 26807 __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
jpayne@68 26808 m->defaults_kwdict = dict;
jpayne@68 26809 Py_INCREF(dict);
jpayne@68 26810 }
jpayne@68 26811 static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) {
jpayne@68 26812 __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
jpayne@68 26813 m->func_annotations = dict;
jpayne@68 26814 Py_INCREF(dict);
jpayne@68 26815 }
jpayne@68 26816
jpayne@68 26817 /* CythonFunction */
jpayne@68 26818 static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, int flags, PyObject* qualname,
jpayne@68 26819 PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) {
jpayne@68 26820 PyObject *op = __Pyx_CyFunction_Init(
jpayne@68 26821 PyObject_GC_New(__pyx_CyFunctionObject, __pyx_CyFunctionType),
jpayne@68 26822 ml, flags, qualname, closure, module, globals, code
jpayne@68 26823 );
jpayne@68 26824 if (likely(op)) {
jpayne@68 26825 PyObject_GC_Track(op);
jpayne@68 26826 }
jpayne@68 26827 return op;
jpayne@68 26828 }
jpayne@68 26829
jpayne@68 26830 /* Py3UpdateBases */
jpayne@68 26831 static PyObject*
jpayne@68 26832 __Pyx_PEP560_update_bases(PyObject *bases)
jpayne@68 26833 {
jpayne@68 26834 Py_ssize_t i, j, size_bases;
jpayne@68 26835 PyObject *base, *meth, *new_base, *result, *new_bases = NULL;
jpayne@68 26836 size_bases = PyTuple_GET_SIZE(bases);
jpayne@68 26837 for (i = 0; i < size_bases; i++) {
jpayne@68 26838 base = PyTuple_GET_ITEM(bases, i);
jpayne@68 26839 if (PyType_Check(base)) {
jpayne@68 26840 if (new_bases) {
jpayne@68 26841 if (PyList_Append(new_bases, base) < 0) {
jpayne@68 26842 goto error;
jpayne@68 26843 }
jpayne@68 26844 }
jpayne@68 26845 continue;
jpayne@68 26846 }
jpayne@68 26847 meth = __Pyx_PyObject_GetAttrStrNoError(base, __pyx_n_s_mro_entries);
jpayne@68 26848 if (!meth && PyErr_Occurred()) {
jpayne@68 26849 goto error;
jpayne@68 26850 }
jpayne@68 26851 if (!meth) {
jpayne@68 26852 if (new_bases) {
jpayne@68 26853 if (PyList_Append(new_bases, base) < 0) {
jpayne@68 26854 goto error;
jpayne@68 26855 }
jpayne@68 26856 }
jpayne@68 26857 continue;
jpayne@68 26858 }
jpayne@68 26859 new_base = __Pyx_PyObject_CallOneArg(meth, bases);
jpayne@68 26860 Py_DECREF(meth);
jpayne@68 26861 if (!new_base) {
jpayne@68 26862 goto error;
jpayne@68 26863 }
jpayne@68 26864 if (!PyTuple_Check(new_base)) {
jpayne@68 26865 PyErr_SetString(PyExc_TypeError,
jpayne@68 26866 "__mro_entries__ must return a tuple");
jpayne@68 26867 Py_DECREF(new_base);
jpayne@68 26868 goto error;
jpayne@68 26869 }
jpayne@68 26870 if (!new_bases) {
jpayne@68 26871 if (!(new_bases = PyList_New(i))) {
jpayne@68 26872 goto error;
jpayne@68 26873 }
jpayne@68 26874 for (j = 0; j < i; j++) {
jpayne@68 26875 base = PyTuple_GET_ITEM(bases, j);
jpayne@68 26876 PyList_SET_ITEM(new_bases, j, base);
jpayne@68 26877 Py_INCREF(base);
jpayne@68 26878 }
jpayne@68 26879 }
jpayne@68 26880 j = PyList_GET_SIZE(new_bases);
jpayne@68 26881 if (PyList_SetSlice(new_bases, j, j, new_base) < 0) {
jpayne@68 26882 goto error;
jpayne@68 26883 }
jpayne@68 26884 Py_DECREF(new_base);
jpayne@68 26885 }
jpayne@68 26886 if (!new_bases) {
jpayne@68 26887 Py_INCREF(bases);
jpayne@68 26888 return bases;
jpayne@68 26889 }
jpayne@68 26890 result = PyList_AsTuple(new_bases);
jpayne@68 26891 Py_DECREF(new_bases);
jpayne@68 26892 return result;
jpayne@68 26893 error:
jpayne@68 26894 Py_XDECREF(new_bases);
jpayne@68 26895 return NULL;
jpayne@68 26896 }
jpayne@68 26897
jpayne@68 26898 /* CalculateMetaclass */
jpayne@68 26899 static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases) {
jpayne@68 26900 Py_ssize_t i, nbases;
jpayne@68 26901 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 26902 nbases = PyTuple_GET_SIZE(bases);
jpayne@68 26903 #else
jpayne@68 26904 nbases = PyTuple_Size(bases);
jpayne@68 26905 if (nbases < 0) return NULL;
jpayne@68 26906 #endif
jpayne@68 26907 for (i=0; i < nbases; i++) {
jpayne@68 26908 PyTypeObject *tmptype;
jpayne@68 26909 #if CYTHON_ASSUME_SAFE_MACROS
jpayne@68 26910 PyObject *tmp = PyTuple_GET_ITEM(bases, i);
jpayne@68 26911 #else
jpayne@68 26912 PyObject *tmp = PyTuple_GetItem(bases, i);
jpayne@68 26913 if (!tmp) return NULL;
jpayne@68 26914 #endif
jpayne@68 26915 tmptype = Py_TYPE(tmp);
jpayne@68 26916 #if PY_MAJOR_VERSION < 3
jpayne@68 26917 if (tmptype == &PyClass_Type)
jpayne@68 26918 continue;
jpayne@68 26919 #endif
jpayne@68 26920 if (!metaclass) {
jpayne@68 26921 metaclass = tmptype;
jpayne@68 26922 continue;
jpayne@68 26923 }
jpayne@68 26924 if (PyType_IsSubtype(metaclass, tmptype))
jpayne@68 26925 continue;
jpayne@68 26926 if (PyType_IsSubtype(tmptype, metaclass)) {
jpayne@68 26927 metaclass = tmptype;
jpayne@68 26928 continue;
jpayne@68 26929 }
jpayne@68 26930 PyErr_SetString(PyExc_TypeError,
jpayne@68 26931 "metaclass conflict: "
jpayne@68 26932 "the metaclass of a derived class "
jpayne@68 26933 "must be a (non-strict) subclass "
jpayne@68 26934 "of the metaclasses of all its bases");
jpayne@68 26935 return NULL;
jpayne@68 26936 }
jpayne@68 26937 if (!metaclass) {
jpayne@68 26938 #if PY_MAJOR_VERSION < 3
jpayne@68 26939 metaclass = &PyClass_Type;
jpayne@68 26940 #else
jpayne@68 26941 metaclass = &PyType_Type;
jpayne@68 26942 #endif
jpayne@68 26943 }
jpayne@68 26944 Py_INCREF((PyObject*) metaclass);
jpayne@68 26945 return (PyObject*) metaclass;
jpayne@68 26946 }
jpayne@68 26947
jpayne@68 26948 /* PyObjectLookupSpecial */
jpayne@68 26949 #if CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS
jpayne@68 26950 static CYTHON_INLINE PyObject* __Pyx__PyObject_LookupSpecial(PyObject* obj, PyObject* attr_name, int with_error) {
jpayne@68 26951 PyObject *res;
jpayne@68 26952 PyTypeObject *tp = Py_TYPE(obj);
jpayne@68 26953 #if PY_MAJOR_VERSION < 3
jpayne@68 26954 if (unlikely(PyInstance_Check(obj)))
jpayne@68 26955 return with_error ? __Pyx_PyObject_GetAttrStr(obj, attr_name) : __Pyx_PyObject_GetAttrStrNoError(obj, attr_name);
jpayne@68 26956 #endif
jpayne@68 26957 res = _PyType_Lookup(tp, attr_name);
jpayne@68 26958 if (likely(res)) {
jpayne@68 26959 descrgetfunc f = Py_TYPE(res)->tp_descr_get;
jpayne@68 26960 if (!f) {
jpayne@68 26961 Py_INCREF(res);
jpayne@68 26962 } else {
jpayne@68 26963 res = f(res, obj, (PyObject *)tp);
jpayne@68 26964 }
jpayne@68 26965 } else if (with_error) {
jpayne@68 26966 PyErr_SetObject(PyExc_AttributeError, attr_name);
jpayne@68 26967 }
jpayne@68 26968 return res;
jpayne@68 26969 }
jpayne@68 26970 #endif
jpayne@68 26971
jpayne@68 26972 /* Py3ClassCreate */
jpayne@68 26973 static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name,
jpayne@68 26974 PyObject *qualname, PyObject *mkw, PyObject *modname, PyObject *doc) {
jpayne@68 26975 PyObject *ns;
jpayne@68 26976 if (metaclass) {
jpayne@68 26977 PyObject *prep = __Pyx_PyObject_GetAttrStrNoError(metaclass, __pyx_n_s_prepare);
jpayne@68 26978 if (prep) {
jpayne@68 26979 PyObject *pargs[3] = {NULL, name, bases};
jpayne@68 26980 ns = __Pyx_PyObject_FastCallDict(prep, pargs+1, 2 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET, mkw);
jpayne@68 26981 Py_DECREF(prep);
jpayne@68 26982 } else {
jpayne@68 26983 if (unlikely(PyErr_Occurred()))
jpayne@68 26984 return NULL;
jpayne@68 26985 ns = PyDict_New();
jpayne@68 26986 }
jpayne@68 26987 } else {
jpayne@68 26988 ns = PyDict_New();
jpayne@68 26989 }
jpayne@68 26990 if (unlikely(!ns))
jpayne@68 26991 return NULL;
jpayne@68 26992 if (unlikely(PyObject_SetItem(ns, __pyx_n_s_module, modname) < 0)) goto bad;
jpayne@68 26993 #if PY_VERSION_HEX >= 0x03030000
jpayne@68 26994 if (unlikely(PyObject_SetItem(ns, __pyx_n_s_qualname, qualname) < 0)) goto bad;
jpayne@68 26995 #else
jpayne@68 26996 CYTHON_MAYBE_UNUSED_VAR(qualname);
jpayne@68 26997 #endif
jpayne@68 26998 if (unlikely(doc && PyObject_SetItem(ns, __pyx_n_s_doc, doc) < 0)) goto bad;
jpayne@68 26999 return ns;
jpayne@68 27000 bad:
jpayne@68 27001 Py_DECREF(ns);
jpayne@68 27002 return NULL;
jpayne@68 27003 }
jpayne@68 27004 #if PY_VERSION_HEX < 0x030600A4 && CYTHON_PEP487_INIT_SUBCLASS
jpayne@68 27005 static int __Pyx_SetNamesPEP487(PyObject *type_obj) {
jpayne@68 27006 PyTypeObject *type = (PyTypeObject*) type_obj;
jpayne@68 27007 PyObject *names_to_set, *key, *value, *set_name, *tmp;
jpayne@68 27008 Py_ssize_t i = 0;
jpayne@68 27009 #if CYTHON_USE_TYPE_SLOTS
jpayne@68 27010 names_to_set = PyDict_Copy(type->tp_dict);
jpayne@68 27011 #else
jpayne@68 27012 {
jpayne@68 27013 PyObject *d = PyObject_GetAttr(type_obj, __pyx_n_s_dict);
jpayne@68 27014 names_to_set = NULL;
jpayne@68 27015 if (likely(d)) {
jpayne@68 27016 PyObject *names_to_set = PyDict_New();
jpayne@68 27017 int ret = likely(names_to_set) ? PyDict_Update(names_to_set, d) : -1;
jpayne@68 27018 Py_DECREF(d);
jpayne@68 27019 if (unlikely(ret < 0))
jpayne@68 27020 Py_CLEAR(names_to_set);
jpayne@68 27021 }
jpayne@68 27022 }
jpayne@68 27023 #endif
jpayne@68 27024 if (unlikely(names_to_set == NULL))
jpayne@68 27025 goto bad;
jpayne@68 27026 while (PyDict_Next(names_to_set, &i, &key, &value)) {
jpayne@68 27027 set_name = __Pyx_PyObject_LookupSpecialNoError(value, __pyx_n_s_set_name);
jpayne@68 27028 if (unlikely(set_name != NULL)) {
jpayne@68 27029 tmp = __Pyx_PyObject_Call2Args(set_name, type_obj, key);
jpayne@68 27030 Py_DECREF(set_name);
jpayne@68 27031 if (unlikely(tmp == NULL)) {
jpayne@68 27032 __Pyx_TypeName value_type_name =
jpayne@68 27033 __Pyx_PyType_GetName(Py_TYPE(value));
jpayne@68 27034 __Pyx_TypeName type_name = __Pyx_PyType_GetName(type);
jpayne@68 27035 PyErr_Format(PyExc_RuntimeError,
jpayne@68 27036 #if PY_MAJOR_VERSION >= 3
jpayne@68 27037 "Error calling __set_name__ on '" __Pyx_FMT_TYPENAME "' instance %R " "in '" __Pyx_FMT_TYPENAME "'",
jpayne@68 27038 value_type_name, key, type_name);
jpayne@68 27039 #else
jpayne@68 27040 "Error calling __set_name__ on '" __Pyx_FMT_TYPENAME "' instance %.100s in '" __Pyx_FMT_TYPENAME "'",
jpayne@68 27041 value_type_name,
jpayne@68 27042 PyString_Check(key) ? PyString_AS_STRING(key) : "?",
jpayne@68 27043 type_name);
jpayne@68 27044 #endif
jpayne@68 27045 goto bad;
jpayne@68 27046 } else {
jpayne@68 27047 Py_DECREF(tmp);
jpayne@68 27048 }
jpayne@68 27049 }
jpayne@68 27050 else if (unlikely(PyErr_Occurred())) {
jpayne@68 27051 goto bad;
jpayne@68 27052 }
jpayne@68 27053 }
jpayne@68 27054 Py_DECREF(names_to_set);
jpayne@68 27055 return 0;
jpayne@68 27056 bad:
jpayne@68 27057 Py_XDECREF(names_to_set);
jpayne@68 27058 return -1;
jpayne@68 27059 }
jpayne@68 27060 static PyObject *__Pyx_InitSubclassPEP487(PyObject *type_obj, PyObject *mkw) {
jpayne@68 27061 #if CYTHON_USE_TYPE_SLOTS && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
jpayne@68 27062 PyTypeObject *type = (PyTypeObject*) type_obj;
jpayne@68 27063 PyObject *mro = type->tp_mro;
jpayne@68 27064 Py_ssize_t i, nbases;
jpayne@68 27065 if (unlikely(!mro)) goto done;
jpayne@68 27066 (void) &__Pyx_GetBuiltinName;
jpayne@68 27067 Py_INCREF(mro);
jpayne@68 27068 nbases = PyTuple_GET_SIZE(mro);
jpayne@68 27069 assert(PyTuple_GET_ITEM(mro, 0) == type_obj);
jpayne@68 27070 for (i = 1; i < nbases-1; i++) {
jpayne@68 27071 PyObject *base, *dict, *meth;
jpayne@68 27072 base = PyTuple_GET_ITEM(mro, i);
jpayne@68 27073 dict = ((PyTypeObject *)base)->tp_dict;
jpayne@68 27074 meth = __Pyx_PyDict_GetItemStrWithError(dict, __pyx_n_s_init_subclass);
jpayne@68 27075 if (unlikely(meth)) {
jpayne@68 27076 descrgetfunc f = Py_TYPE(meth)->tp_descr_get;
jpayne@68 27077 PyObject *res;
jpayne@68 27078 Py_INCREF(meth);
jpayne@68 27079 if (likely(f)) {
jpayne@68 27080 res = f(meth, NULL, type_obj);
jpayne@68 27081 Py_DECREF(meth);
jpayne@68 27082 if (unlikely(!res)) goto bad;
jpayne@68 27083 meth = res;
jpayne@68 27084 }
jpayne@68 27085 res = __Pyx_PyObject_FastCallDict(meth, NULL, 0, mkw);
jpayne@68 27086 Py_DECREF(meth);
jpayne@68 27087 if (unlikely(!res)) goto bad;
jpayne@68 27088 Py_DECREF(res);
jpayne@68 27089 goto done;
jpayne@68 27090 } else if (unlikely(PyErr_Occurred())) {
jpayne@68 27091 goto bad;
jpayne@68 27092 }
jpayne@68 27093 }
jpayne@68 27094 done:
jpayne@68 27095 Py_XDECREF(mro);
jpayne@68 27096 return type_obj;
jpayne@68 27097 bad:
jpayne@68 27098 Py_XDECREF(mro);
jpayne@68 27099 Py_DECREF(type_obj);
jpayne@68 27100 return NULL;
jpayne@68 27101 #else
jpayne@68 27102 PyObject *super_type, *super, *func, *res;
jpayne@68 27103 #if CYTHON_COMPILING_IN_PYPY && !defined(PySuper_Type)
jpayne@68 27104 super_type = __Pyx_GetBuiltinName(__pyx_n_s_super);
jpayne@68 27105 #else
jpayne@68 27106 super_type = (PyObject*) &PySuper_Type;
jpayne@68 27107 (void) &__Pyx_GetBuiltinName;
jpayne@68 27108 #endif
jpayne@68 27109 super = likely(super_type) ? __Pyx_PyObject_Call2Args(super_type, type_obj, type_obj) : NULL;
jpayne@68 27110 #if CYTHON_COMPILING_IN_PYPY && !defined(PySuper_Type)
jpayne@68 27111 Py_XDECREF(super_type);
jpayne@68 27112 #endif
jpayne@68 27113 if (unlikely(!super)) {
jpayne@68 27114 Py_CLEAR(type_obj);
jpayne@68 27115 goto done;
jpayne@68 27116 }
jpayne@68 27117 func = __Pyx_PyObject_GetAttrStrNoError(super, __pyx_n_s_init_subclass);
jpayne@68 27118 Py_DECREF(super);
jpayne@68 27119 if (likely(!func)) {
jpayne@68 27120 if (unlikely(PyErr_Occurred()))
jpayne@68 27121 Py_CLEAR(type_obj);
jpayne@68 27122 goto done;
jpayne@68 27123 }
jpayne@68 27124 res = __Pyx_PyObject_FastCallDict(func, NULL, 0, mkw);
jpayne@68 27125 Py_DECREF(func);
jpayne@68 27126 if (unlikely(!res))
jpayne@68 27127 Py_CLEAR(type_obj);
jpayne@68 27128 Py_XDECREF(res);
jpayne@68 27129 done:
jpayne@68 27130 return type_obj;
jpayne@68 27131 #endif
jpayne@68 27132 }
jpayne@68 27133 #endif
jpayne@68 27134 static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases,
jpayne@68 27135 PyObject *dict, PyObject *mkw,
jpayne@68 27136 int calculate_metaclass, int allow_py2_metaclass) {
jpayne@68 27137 PyObject *result;
jpayne@68 27138 PyObject *owned_metaclass = NULL;
jpayne@68 27139 PyObject *margs[4] = {NULL, name, bases, dict};
jpayne@68 27140 if (allow_py2_metaclass) {
jpayne@68 27141 owned_metaclass = PyObject_GetItem(dict, __pyx_n_s_metaclass);
jpayne@68 27142 if (owned_metaclass) {
jpayne@68 27143 metaclass = owned_metaclass;
jpayne@68 27144 } else if (likely(PyErr_ExceptionMatches(PyExc_KeyError))) {
jpayne@68 27145 PyErr_Clear();
jpayne@68 27146 } else {
jpayne@68 27147 return NULL;
jpayne@68 27148 }
jpayne@68 27149 }
jpayne@68 27150 if (calculate_metaclass && (!metaclass || PyType_Check(metaclass))) {
jpayne@68 27151 metaclass = __Pyx_CalculateMetaclass((PyTypeObject*) metaclass, bases);
jpayne@68 27152 Py_XDECREF(owned_metaclass);
jpayne@68 27153 if (unlikely(!metaclass))
jpayne@68 27154 return NULL;
jpayne@68 27155 owned_metaclass = metaclass;
jpayne@68 27156 }
jpayne@68 27157 result = __Pyx_PyObject_FastCallDict(metaclass, margs+1, 3 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET,
jpayne@68 27158 #if PY_VERSION_HEX < 0x030600A4
jpayne@68 27159 (metaclass == (PyObject*)&PyType_Type) ? NULL : mkw
jpayne@68 27160 #else
jpayne@68 27161 mkw
jpayne@68 27162 #endif
jpayne@68 27163 );
jpayne@68 27164 Py_XDECREF(owned_metaclass);
jpayne@68 27165 #if PY_VERSION_HEX < 0x030600A4 && CYTHON_PEP487_INIT_SUBCLASS
jpayne@68 27166 if (likely(result) && likely(PyType_Check(result))) {
jpayne@68 27167 if (unlikely(__Pyx_SetNamesPEP487(result) < 0)) {
jpayne@68 27168 Py_CLEAR(result);
jpayne@68 27169 } else {
jpayne@68 27170 result = __Pyx_InitSubclassPEP487(result, mkw);
jpayne@68 27171 }
jpayne@68 27172 }
jpayne@68 27173 #else
jpayne@68 27174 (void) &__Pyx_GetBuiltinName;
jpayne@68 27175 #endif
jpayne@68 27176 return result;
jpayne@68 27177 }
jpayne@68 27178
jpayne@68 27179 /* CLineInTraceback */
jpayne@68 27180 #ifndef CYTHON_CLINE_IN_TRACEBACK
jpayne@68 27181 static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line) {
jpayne@68 27182 PyObject *use_cline;
jpayne@68 27183 PyObject *ptype, *pvalue, *ptraceback;
jpayne@68 27184 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 27185 PyObject **cython_runtime_dict;
jpayne@68 27186 #endif
jpayne@68 27187 CYTHON_MAYBE_UNUSED_VAR(tstate);
jpayne@68 27188 if (unlikely(!__pyx_cython_runtime)) {
jpayne@68 27189 return c_line;
jpayne@68 27190 }
jpayne@68 27191 __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback);
jpayne@68 27192 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 27193 cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime);
jpayne@68 27194 if (likely(cython_runtime_dict)) {
jpayne@68 27195 __PYX_PY_DICT_LOOKUP_IF_MODIFIED(
jpayne@68 27196 use_cline, *cython_runtime_dict,
jpayne@68 27197 __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback))
jpayne@68 27198 } else
jpayne@68 27199 #endif
jpayne@68 27200 {
jpayne@68 27201 PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStrNoError(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback);
jpayne@68 27202 if (use_cline_obj) {
jpayne@68 27203 use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True;
jpayne@68 27204 Py_DECREF(use_cline_obj);
jpayne@68 27205 } else {
jpayne@68 27206 PyErr_Clear();
jpayne@68 27207 use_cline = NULL;
jpayne@68 27208 }
jpayne@68 27209 }
jpayne@68 27210 if (!use_cline) {
jpayne@68 27211 c_line = 0;
jpayne@68 27212 (void) PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False);
jpayne@68 27213 }
jpayne@68 27214 else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) {
jpayne@68 27215 c_line = 0;
jpayne@68 27216 }
jpayne@68 27217 __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback);
jpayne@68 27218 return c_line;
jpayne@68 27219 }
jpayne@68 27220 #endif
jpayne@68 27221
jpayne@68 27222 /* CodeObjectCache */
jpayne@68 27223 #if !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 27224 static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
jpayne@68 27225 int start = 0, mid = 0, end = count - 1;
jpayne@68 27226 if (end >= 0 && code_line > entries[end].code_line) {
jpayne@68 27227 return count;
jpayne@68 27228 }
jpayne@68 27229 while (start < end) {
jpayne@68 27230 mid = start + (end - start) / 2;
jpayne@68 27231 if (code_line < entries[mid].code_line) {
jpayne@68 27232 end = mid;
jpayne@68 27233 } else if (code_line > entries[mid].code_line) {
jpayne@68 27234 start = mid + 1;
jpayne@68 27235 } else {
jpayne@68 27236 return mid;
jpayne@68 27237 }
jpayne@68 27238 }
jpayne@68 27239 if (code_line <= entries[mid].code_line) {
jpayne@68 27240 return mid;
jpayne@68 27241 } else {
jpayne@68 27242 return mid + 1;
jpayne@68 27243 }
jpayne@68 27244 }
jpayne@68 27245 static PyCodeObject *__pyx_find_code_object(int code_line) {
jpayne@68 27246 PyCodeObject* code_object;
jpayne@68 27247 int pos;
jpayne@68 27248 if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
jpayne@68 27249 return NULL;
jpayne@68 27250 }
jpayne@68 27251 pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
jpayne@68 27252 if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
jpayne@68 27253 return NULL;
jpayne@68 27254 }
jpayne@68 27255 code_object = __pyx_code_cache.entries[pos].code_object;
jpayne@68 27256 Py_INCREF(code_object);
jpayne@68 27257 return code_object;
jpayne@68 27258 }
jpayne@68 27259 static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
jpayne@68 27260 int pos, i;
jpayne@68 27261 __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
jpayne@68 27262 if (unlikely(!code_line)) {
jpayne@68 27263 return;
jpayne@68 27264 }
jpayne@68 27265 if (unlikely(!entries)) {
jpayne@68 27266 entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
jpayne@68 27267 if (likely(entries)) {
jpayne@68 27268 __pyx_code_cache.entries = entries;
jpayne@68 27269 __pyx_code_cache.max_count = 64;
jpayne@68 27270 __pyx_code_cache.count = 1;
jpayne@68 27271 entries[0].code_line = code_line;
jpayne@68 27272 entries[0].code_object = code_object;
jpayne@68 27273 Py_INCREF(code_object);
jpayne@68 27274 }
jpayne@68 27275 return;
jpayne@68 27276 }
jpayne@68 27277 pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
jpayne@68 27278 if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
jpayne@68 27279 PyCodeObject* tmp = entries[pos].code_object;
jpayne@68 27280 entries[pos].code_object = code_object;
jpayne@68 27281 Py_DECREF(tmp);
jpayne@68 27282 return;
jpayne@68 27283 }
jpayne@68 27284 if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
jpayne@68 27285 int new_max = __pyx_code_cache.max_count + 64;
jpayne@68 27286 entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
jpayne@68 27287 __pyx_code_cache.entries, ((size_t)new_max) * sizeof(__Pyx_CodeObjectCacheEntry));
jpayne@68 27288 if (unlikely(!entries)) {
jpayne@68 27289 return;
jpayne@68 27290 }
jpayne@68 27291 __pyx_code_cache.entries = entries;
jpayne@68 27292 __pyx_code_cache.max_count = new_max;
jpayne@68 27293 }
jpayne@68 27294 for (i=__pyx_code_cache.count; i>pos; i--) {
jpayne@68 27295 entries[i] = entries[i-1];
jpayne@68 27296 }
jpayne@68 27297 entries[pos].code_line = code_line;
jpayne@68 27298 entries[pos].code_object = code_object;
jpayne@68 27299 __pyx_code_cache.count++;
jpayne@68 27300 Py_INCREF(code_object);
jpayne@68 27301 }
jpayne@68 27302 #endif
jpayne@68 27303
jpayne@68 27304 /* AddTraceback */
jpayne@68 27305 #include "compile.h"
jpayne@68 27306 #include "frameobject.h"
jpayne@68 27307 #include "traceback.h"
jpayne@68 27308 #if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 27309 #ifndef Py_BUILD_CORE
jpayne@68 27310 #define Py_BUILD_CORE 1
jpayne@68 27311 #endif
jpayne@68 27312 #include "internal/pycore_frame.h"
jpayne@68 27313 #endif
jpayne@68 27314 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 27315 static PyObject *__Pyx_PyCode_Replace_For_AddTraceback(PyObject *code, PyObject *scratch_dict,
jpayne@68 27316 PyObject *firstlineno, PyObject *name) {
jpayne@68 27317 PyObject *replace = NULL;
jpayne@68 27318 if (unlikely(PyDict_SetItemString(scratch_dict, "co_firstlineno", firstlineno))) return NULL;
jpayne@68 27319 if (unlikely(PyDict_SetItemString(scratch_dict, "co_name", name))) return NULL;
jpayne@68 27320 replace = PyObject_GetAttrString(code, "replace");
jpayne@68 27321 if (likely(replace)) {
jpayne@68 27322 PyObject *result;
jpayne@68 27323 result = PyObject_Call(replace, __pyx_empty_tuple, scratch_dict);
jpayne@68 27324 Py_DECREF(replace);
jpayne@68 27325 return result;
jpayne@68 27326 }
jpayne@68 27327 PyErr_Clear();
jpayne@68 27328 #if __PYX_LIMITED_VERSION_HEX < 0x030780000
jpayne@68 27329 {
jpayne@68 27330 PyObject *compiled = NULL, *result = NULL;
jpayne@68 27331 if (unlikely(PyDict_SetItemString(scratch_dict, "code", code))) return NULL;
jpayne@68 27332 if (unlikely(PyDict_SetItemString(scratch_dict, "type", (PyObject*)(&PyType_Type)))) return NULL;
jpayne@68 27333 compiled = Py_CompileString(
jpayne@68 27334 "out = type(code)(\n"
jpayne@68 27335 " code.co_argcount, code.co_kwonlyargcount, code.co_nlocals, code.co_stacksize,\n"
jpayne@68 27336 " code.co_flags, code.co_code, code.co_consts, code.co_names,\n"
jpayne@68 27337 " code.co_varnames, code.co_filename, co_name, co_firstlineno,\n"
jpayne@68 27338 " code.co_lnotab)\n", "<dummy>", Py_file_input);
jpayne@68 27339 if (!compiled) return NULL;
jpayne@68 27340 result = PyEval_EvalCode(compiled, scratch_dict, scratch_dict);
jpayne@68 27341 Py_DECREF(compiled);
jpayne@68 27342 if (!result) PyErr_Print();
jpayne@68 27343 Py_DECREF(result);
jpayne@68 27344 result = PyDict_GetItemString(scratch_dict, "out");
jpayne@68 27345 if (result) Py_INCREF(result);
jpayne@68 27346 return result;
jpayne@68 27347 }
jpayne@68 27348 #else
jpayne@68 27349 return NULL;
jpayne@68 27350 #endif
jpayne@68 27351 }
jpayne@68 27352 static void __Pyx_AddTraceback(const char *funcname, int c_line,
jpayne@68 27353 int py_line, const char *filename) {
jpayne@68 27354 PyObject *code_object = NULL, *py_py_line = NULL, *py_funcname = NULL, *dict = NULL;
jpayne@68 27355 PyObject *replace = NULL, *getframe = NULL, *frame = NULL;
jpayne@68 27356 PyObject *exc_type, *exc_value, *exc_traceback;
jpayne@68 27357 int success = 0;
jpayne@68 27358 if (c_line) {
jpayne@68 27359 (void) __pyx_cfilenm;
jpayne@68 27360 (void) __Pyx_CLineForTraceback(__Pyx_PyThreadState_Current, c_line);
jpayne@68 27361 }
jpayne@68 27362 PyErr_Fetch(&exc_type, &exc_value, &exc_traceback);
jpayne@68 27363 code_object = Py_CompileString("_getframe()", filename, Py_eval_input);
jpayne@68 27364 if (unlikely(!code_object)) goto bad;
jpayne@68 27365 py_py_line = PyLong_FromLong(py_line);
jpayne@68 27366 if (unlikely(!py_py_line)) goto bad;
jpayne@68 27367 py_funcname = PyUnicode_FromString(funcname);
jpayne@68 27368 if (unlikely(!py_funcname)) goto bad;
jpayne@68 27369 dict = PyDict_New();
jpayne@68 27370 if (unlikely(!dict)) goto bad;
jpayne@68 27371 {
jpayne@68 27372 PyObject *old_code_object = code_object;
jpayne@68 27373 code_object = __Pyx_PyCode_Replace_For_AddTraceback(code_object, dict, py_py_line, py_funcname);
jpayne@68 27374 Py_DECREF(old_code_object);
jpayne@68 27375 }
jpayne@68 27376 if (unlikely(!code_object)) goto bad;
jpayne@68 27377 getframe = PySys_GetObject("_getframe");
jpayne@68 27378 if (unlikely(!getframe)) goto bad;
jpayne@68 27379 if (unlikely(PyDict_SetItemString(dict, "_getframe", getframe))) goto bad;
jpayne@68 27380 frame = PyEval_EvalCode(code_object, dict, dict);
jpayne@68 27381 if (unlikely(!frame) || frame == Py_None) goto bad;
jpayne@68 27382 success = 1;
jpayne@68 27383 bad:
jpayne@68 27384 PyErr_Restore(exc_type, exc_value, exc_traceback);
jpayne@68 27385 Py_XDECREF(code_object);
jpayne@68 27386 Py_XDECREF(py_py_line);
jpayne@68 27387 Py_XDECREF(py_funcname);
jpayne@68 27388 Py_XDECREF(dict);
jpayne@68 27389 Py_XDECREF(replace);
jpayne@68 27390 if (success) {
jpayne@68 27391 PyTraceBack_Here(
jpayne@68 27392 (struct _frame*)frame);
jpayne@68 27393 }
jpayne@68 27394 Py_XDECREF(frame);
jpayne@68 27395 }
jpayne@68 27396 #else
jpayne@68 27397 static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
jpayne@68 27398 const char *funcname, int c_line,
jpayne@68 27399 int py_line, const char *filename) {
jpayne@68 27400 PyCodeObject *py_code = NULL;
jpayne@68 27401 PyObject *py_funcname = NULL;
jpayne@68 27402 #if PY_MAJOR_VERSION < 3
jpayne@68 27403 PyObject *py_srcfile = NULL;
jpayne@68 27404 py_srcfile = PyString_FromString(filename);
jpayne@68 27405 if (!py_srcfile) goto bad;
jpayne@68 27406 #endif
jpayne@68 27407 if (c_line) {
jpayne@68 27408 #if PY_MAJOR_VERSION < 3
jpayne@68 27409 py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
jpayne@68 27410 if (!py_funcname) goto bad;
jpayne@68 27411 #else
jpayne@68 27412 py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
jpayne@68 27413 if (!py_funcname) goto bad;
jpayne@68 27414 funcname = PyUnicode_AsUTF8(py_funcname);
jpayne@68 27415 if (!funcname) goto bad;
jpayne@68 27416 #endif
jpayne@68 27417 }
jpayne@68 27418 else {
jpayne@68 27419 #if PY_MAJOR_VERSION < 3
jpayne@68 27420 py_funcname = PyString_FromString(funcname);
jpayne@68 27421 if (!py_funcname) goto bad;
jpayne@68 27422 #endif
jpayne@68 27423 }
jpayne@68 27424 #if PY_MAJOR_VERSION < 3
jpayne@68 27425 py_code = __Pyx_PyCode_New(
jpayne@68 27426 0,
jpayne@68 27427 0,
jpayne@68 27428 0,
jpayne@68 27429 0,
jpayne@68 27430 0,
jpayne@68 27431 0,
jpayne@68 27432 __pyx_empty_bytes, /*PyObject *code,*/
jpayne@68 27433 __pyx_empty_tuple, /*PyObject *consts,*/
jpayne@68 27434 __pyx_empty_tuple, /*PyObject *names,*/
jpayne@68 27435 __pyx_empty_tuple, /*PyObject *varnames,*/
jpayne@68 27436 __pyx_empty_tuple, /*PyObject *freevars,*/
jpayne@68 27437 __pyx_empty_tuple, /*PyObject *cellvars,*/
jpayne@68 27438 py_srcfile, /*PyObject *filename,*/
jpayne@68 27439 py_funcname, /*PyObject *name,*/
jpayne@68 27440 py_line,
jpayne@68 27441 __pyx_empty_bytes /*PyObject *lnotab*/
jpayne@68 27442 );
jpayne@68 27443 Py_DECREF(py_srcfile);
jpayne@68 27444 #else
jpayne@68 27445 py_code = PyCode_NewEmpty(filename, funcname, py_line);
jpayne@68 27446 #endif
jpayne@68 27447 Py_XDECREF(py_funcname);
jpayne@68 27448 return py_code;
jpayne@68 27449 bad:
jpayne@68 27450 Py_XDECREF(py_funcname);
jpayne@68 27451 #if PY_MAJOR_VERSION < 3
jpayne@68 27452 Py_XDECREF(py_srcfile);
jpayne@68 27453 #endif
jpayne@68 27454 return NULL;
jpayne@68 27455 }
jpayne@68 27456 static void __Pyx_AddTraceback(const char *funcname, int c_line,
jpayne@68 27457 int py_line, const char *filename) {
jpayne@68 27458 PyCodeObject *py_code = 0;
jpayne@68 27459 PyFrameObject *py_frame = 0;
jpayne@68 27460 PyThreadState *tstate = __Pyx_PyThreadState_Current;
jpayne@68 27461 PyObject *ptype, *pvalue, *ptraceback;
jpayne@68 27462 if (c_line) {
jpayne@68 27463 c_line = __Pyx_CLineForTraceback(tstate, c_line);
jpayne@68 27464 }
jpayne@68 27465 py_code = __pyx_find_code_object(c_line ? -c_line : py_line);
jpayne@68 27466 if (!py_code) {
jpayne@68 27467 __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback);
jpayne@68 27468 py_code = __Pyx_CreateCodeObjectForTraceback(
jpayne@68 27469 funcname, c_line, py_line, filename);
jpayne@68 27470 if (!py_code) {
jpayne@68 27471 /* If the code object creation fails, then we should clear the
jpayne@68 27472 fetched exception references and propagate the new exception */
jpayne@68 27473 Py_XDECREF(ptype);
jpayne@68 27474 Py_XDECREF(pvalue);
jpayne@68 27475 Py_XDECREF(ptraceback);
jpayne@68 27476 goto bad;
jpayne@68 27477 }
jpayne@68 27478 __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback);
jpayne@68 27479 __pyx_insert_code_object(c_line ? -c_line : py_line, py_code);
jpayne@68 27480 }
jpayne@68 27481 py_frame = PyFrame_New(
jpayne@68 27482 tstate, /*PyThreadState *tstate,*/
jpayne@68 27483 py_code, /*PyCodeObject *code,*/
jpayne@68 27484 __pyx_d, /*PyObject *globals,*/
jpayne@68 27485 0 /*PyObject *locals*/
jpayne@68 27486 );
jpayne@68 27487 if (!py_frame) goto bad;
jpayne@68 27488 __Pyx_PyFrame_SetLineNumber(py_frame, py_line);
jpayne@68 27489 PyTraceBack_Here(py_frame);
jpayne@68 27490 bad:
jpayne@68 27491 Py_XDECREF(py_code);
jpayne@68 27492 Py_XDECREF(py_frame);
jpayne@68 27493 }
jpayne@68 27494 #endif
jpayne@68 27495
jpayne@68 27496 /* CIntFromPyVerify */
jpayne@68 27497 #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
jpayne@68 27498 __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
jpayne@68 27499 #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
jpayne@68 27500 __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
jpayne@68 27501 #define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
jpayne@68 27502 {\
jpayne@68 27503 func_type value = func_value;\
jpayne@68 27504 if (sizeof(target_type) < sizeof(func_type)) {\
jpayne@68 27505 if (unlikely(value != (func_type) (target_type) value)) {\
jpayne@68 27506 func_type zero = 0;\
jpayne@68 27507 if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
jpayne@68 27508 return (target_type) -1;\
jpayne@68 27509 if (is_unsigned && unlikely(value < zero))\
jpayne@68 27510 goto raise_neg_overflow;\
jpayne@68 27511 else\
jpayne@68 27512 goto raise_overflow;\
jpayne@68 27513 }\
jpayne@68 27514 }\
jpayne@68 27515 return (target_type) value;\
jpayne@68 27516 }
jpayne@68 27517
jpayne@68 27518 /* CIntFromPy */
jpayne@68 27519 static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
jpayne@68 27520 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 27521 #pragma GCC diagnostic push
jpayne@68 27522 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 27523 #endif
jpayne@68 27524 const int neg_one = (int) -1, const_zero = (int) 0;
jpayne@68 27525 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 27526 #pragma GCC diagnostic pop
jpayne@68 27527 #endif
jpayne@68 27528 const int is_unsigned = neg_one > const_zero;
jpayne@68 27529 #if PY_MAJOR_VERSION < 3
jpayne@68 27530 if (likely(PyInt_Check(x))) {
jpayne@68 27531 if ((sizeof(int) < sizeof(long))) {
jpayne@68 27532 __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
jpayne@68 27533 } else {
jpayne@68 27534 long val = PyInt_AS_LONG(x);
jpayne@68 27535 if (is_unsigned && unlikely(val < 0)) {
jpayne@68 27536 goto raise_neg_overflow;
jpayne@68 27537 }
jpayne@68 27538 return (int) val;
jpayne@68 27539 }
jpayne@68 27540 }
jpayne@68 27541 #endif
jpayne@68 27542 if (unlikely(!PyLong_Check(x))) {
jpayne@68 27543 int val;
jpayne@68 27544 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
jpayne@68 27545 if (!tmp) return (int) -1;
jpayne@68 27546 val = __Pyx_PyInt_As_int(tmp);
jpayne@68 27547 Py_DECREF(tmp);
jpayne@68 27548 return val;
jpayne@68 27549 }
jpayne@68 27550 if (is_unsigned) {
jpayne@68 27551 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 27552 if (unlikely(__Pyx_PyLong_IsNeg(x))) {
jpayne@68 27553 goto raise_neg_overflow;
jpayne@68 27554 } else if (__Pyx_PyLong_IsCompact(x)) {
jpayne@68 27555 __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x))
jpayne@68 27556 } else {
jpayne@68 27557 const digit* digits = __Pyx_PyLong_Digits(x);
jpayne@68 27558 assert(__Pyx_PyLong_DigitCount(x) > 1);
jpayne@68 27559 switch (__Pyx_PyLong_DigitCount(x)) {
jpayne@68 27560 case 2:
jpayne@68 27561 if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) {
jpayne@68 27562 if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) {
jpayne@68 27563 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27564 } else if ((8 * sizeof(int) >= 2 * PyLong_SHIFT)) {
jpayne@68 27565 return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
jpayne@68 27566 }
jpayne@68 27567 }
jpayne@68 27568 break;
jpayne@68 27569 case 3:
jpayne@68 27570 if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) {
jpayne@68 27571 if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) {
jpayne@68 27572 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27573 } else if ((8 * sizeof(int) >= 3 * PyLong_SHIFT)) {
jpayne@68 27574 return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
jpayne@68 27575 }
jpayne@68 27576 }
jpayne@68 27577 break;
jpayne@68 27578 case 4:
jpayne@68 27579 if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) {
jpayne@68 27580 if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) {
jpayne@68 27581 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27582 } else if ((8 * sizeof(int) >= 4 * PyLong_SHIFT)) {
jpayne@68 27583 return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
jpayne@68 27584 }
jpayne@68 27585 }
jpayne@68 27586 break;
jpayne@68 27587 }
jpayne@68 27588 }
jpayne@68 27589 #endif
jpayne@68 27590 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7
jpayne@68 27591 if (unlikely(Py_SIZE(x) < 0)) {
jpayne@68 27592 goto raise_neg_overflow;
jpayne@68 27593 }
jpayne@68 27594 #else
jpayne@68 27595 {
jpayne@68 27596 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
jpayne@68 27597 if (unlikely(result < 0))
jpayne@68 27598 return (int) -1;
jpayne@68 27599 if (unlikely(result == 1))
jpayne@68 27600 goto raise_neg_overflow;
jpayne@68 27601 }
jpayne@68 27602 #endif
jpayne@68 27603 if ((sizeof(int) <= sizeof(unsigned long))) {
jpayne@68 27604 __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x))
jpayne@68 27605 #ifdef HAVE_LONG_LONG
jpayne@68 27606 } else if ((sizeof(int) <= sizeof(unsigned PY_LONG_LONG))) {
jpayne@68 27607 __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
jpayne@68 27608 #endif
jpayne@68 27609 }
jpayne@68 27610 } else {
jpayne@68 27611 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 27612 if (__Pyx_PyLong_IsCompact(x)) {
jpayne@68 27613 __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x))
jpayne@68 27614 } else {
jpayne@68 27615 const digit* digits = __Pyx_PyLong_Digits(x);
jpayne@68 27616 assert(__Pyx_PyLong_DigitCount(x) > 1);
jpayne@68 27617 switch (__Pyx_PyLong_SignedDigitCount(x)) {
jpayne@68 27618 case -2:
jpayne@68 27619 if ((8 * sizeof(int) - 1 > 1 * PyLong_SHIFT)) {
jpayne@68 27620 if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) {
jpayne@68 27621 __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27622 } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) {
jpayne@68 27623 return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
jpayne@68 27624 }
jpayne@68 27625 }
jpayne@68 27626 break;
jpayne@68 27627 case 2:
jpayne@68 27628 if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) {
jpayne@68 27629 if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) {
jpayne@68 27630 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27631 } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) {
jpayne@68 27632 return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
jpayne@68 27633 }
jpayne@68 27634 }
jpayne@68 27635 break;
jpayne@68 27636 case -3:
jpayne@68 27637 if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) {
jpayne@68 27638 if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) {
jpayne@68 27639 __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27640 } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) {
jpayne@68 27641 return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
jpayne@68 27642 }
jpayne@68 27643 }
jpayne@68 27644 break;
jpayne@68 27645 case 3:
jpayne@68 27646 if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) {
jpayne@68 27647 if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) {
jpayne@68 27648 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27649 } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) {
jpayne@68 27650 return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
jpayne@68 27651 }
jpayne@68 27652 }
jpayne@68 27653 break;
jpayne@68 27654 case -4:
jpayne@68 27655 if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) {
jpayne@68 27656 if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) {
jpayne@68 27657 __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27658 } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) {
jpayne@68 27659 return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
jpayne@68 27660 }
jpayne@68 27661 }
jpayne@68 27662 break;
jpayne@68 27663 case 4:
jpayne@68 27664 if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) {
jpayne@68 27665 if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) {
jpayne@68 27666 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27667 } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) {
jpayne@68 27668 return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
jpayne@68 27669 }
jpayne@68 27670 }
jpayne@68 27671 break;
jpayne@68 27672 }
jpayne@68 27673 }
jpayne@68 27674 #endif
jpayne@68 27675 if ((sizeof(int) <= sizeof(long))) {
jpayne@68 27676 __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x))
jpayne@68 27677 #ifdef HAVE_LONG_LONG
jpayne@68 27678 } else if ((sizeof(int) <= sizeof(PY_LONG_LONG))) {
jpayne@68 27679 __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x))
jpayne@68 27680 #endif
jpayne@68 27681 }
jpayne@68 27682 }
jpayne@68 27683 {
jpayne@68 27684 int val;
jpayne@68 27685 int ret = -1;
jpayne@68 27686 #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 27687 Py_ssize_t bytes_copied = PyLong_AsNativeBytes(
jpayne@68 27688 x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0));
jpayne@68 27689 if (unlikely(bytes_copied == -1)) {
jpayne@68 27690 } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) {
jpayne@68 27691 goto raise_overflow;
jpayne@68 27692 } else {
jpayne@68 27693 ret = 0;
jpayne@68 27694 }
jpayne@68 27695 #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray)
jpayne@68 27696 int one = 1; int is_little = (int)*(unsigned char *)&one;
jpayne@68 27697 unsigned char *bytes = (unsigned char *)&val;
jpayne@68 27698 ret = _PyLong_AsByteArray((PyLongObject *)x,
jpayne@68 27699 bytes, sizeof(val),
jpayne@68 27700 is_little, !is_unsigned);
jpayne@68 27701 #else
jpayne@68 27702 PyObject *v;
jpayne@68 27703 PyObject *stepval = NULL, *mask = NULL, *shift = NULL;
jpayne@68 27704 int bits, remaining_bits, is_negative = 0;
jpayne@68 27705 int chunk_size = (sizeof(long) < 8) ? 30 : 62;
jpayne@68 27706 if (likely(PyLong_CheckExact(x))) {
jpayne@68 27707 v = __Pyx_NewRef(x);
jpayne@68 27708 } else {
jpayne@68 27709 v = PyNumber_Long(x);
jpayne@68 27710 if (unlikely(!v)) return (int) -1;
jpayne@68 27711 assert(PyLong_CheckExact(v));
jpayne@68 27712 }
jpayne@68 27713 {
jpayne@68 27714 int result = PyObject_RichCompareBool(v, Py_False, Py_LT);
jpayne@68 27715 if (unlikely(result < 0)) {
jpayne@68 27716 Py_DECREF(v);
jpayne@68 27717 return (int) -1;
jpayne@68 27718 }
jpayne@68 27719 is_negative = result == 1;
jpayne@68 27720 }
jpayne@68 27721 if (is_unsigned && unlikely(is_negative)) {
jpayne@68 27722 Py_DECREF(v);
jpayne@68 27723 goto raise_neg_overflow;
jpayne@68 27724 } else if (is_negative) {
jpayne@68 27725 stepval = PyNumber_Invert(v);
jpayne@68 27726 Py_DECREF(v);
jpayne@68 27727 if (unlikely(!stepval))
jpayne@68 27728 return (int) -1;
jpayne@68 27729 } else {
jpayne@68 27730 stepval = v;
jpayne@68 27731 }
jpayne@68 27732 v = NULL;
jpayne@68 27733 val = (int) 0;
jpayne@68 27734 mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done;
jpayne@68 27735 shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done;
jpayne@68 27736 for (bits = 0; bits < (int) sizeof(int) * 8 - chunk_size; bits += chunk_size) {
jpayne@68 27737 PyObject *tmp, *digit;
jpayne@68 27738 long idigit;
jpayne@68 27739 digit = PyNumber_And(stepval, mask);
jpayne@68 27740 if (unlikely(!digit)) goto done;
jpayne@68 27741 idigit = PyLong_AsLong(digit);
jpayne@68 27742 Py_DECREF(digit);
jpayne@68 27743 if (unlikely(idigit < 0)) goto done;
jpayne@68 27744 val |= ((int) idigit) << bits;
jpayne@68 27745 tmp = PyNumber_Rshift(stepval, shift);
jpayne@68 27746 if (unlikely(!tmp)) goto done;
jpayne@68 27747 Py_DECREF(stepval); stepval = tmp;
jpayne@68 27748 }
jpayne@68 27749 Py_DECREF(shift); shift = NULL;
jpayne@68 27750 Py_DECREF(mask); mask = NULL;
jpayne@68 27751 {
jpayne@68 27752 long idigit = PyLong_AsLong(stepval);
jpayne@68 27753 if (unlikely(idigit < 0)) goto done;
jpayne@68 27754 remaining_bits = ((int) sizeof(int) * 8) - bits - (is_unsigned ? 0 : 1);
jpayne@68 27755 if (unlikely(idigit >= (1L << remaining_bits)))
jpayne@68 27756 goto raise_overflow;
jpayne@68 27757 val |= ((int) idigit) << bits;
jpayne@68 27758 }
jpayne@68 27759 if (!is_unsigned) {
jpayne@68 27760 if (unlikely(val & (((int) 1) << (sizeof(int) * 8 - 1))))
jpayne@68 27761 goto raise_overflow;
jpayne@68 27762 if (is_negative)
jpayne@68 27763 val = ~val;
jpayne@68 27764 }
jpayne@68 27765 ret = 0;
jpayne@68 27766 done:
jpayne@68 27767 Py_XDECREF(shift);
jpayne@68 27768 Py_XDECREF(mask);
jpayne@68 27769 Py_XDECREF(stepval);
jpayne@68 27770 #endif
jpayne@68 27771 if (unlikely(ret))
jpayne@68 27772 return (int) -1;
jpayne@68 27773 return val;
jpayne@68 27774 }
jpayne@68 27775 raise_overflow:
jpayne@68 27776 PyErr_SetString(PyExc_OverflowError,
jpayne@68 27777 "value too large to convert to int");
jpayne@68 27778 return (int) -1;
jpayne@68 27779 raise_neg_overflow:
jpayne@68 27780 PyErr_SetString(PyExc_OverflowError,
jpayne@68 27781 "can't convert negative value to int");
jpayne@68 27782 return (int) -1;
jpayne@68 27783 }
jpayne@68 27784
jpayne@68 27785 /* CIntToPy */
jpayne@68 27786 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
jpayne@68 27787 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 27788 #pragma GCC diagnostic push
jpayne@68 27789 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 27790 #endif
jpayne@68 27791 const int neg_one = (int) -1, const_zero = (int) 0;
jpayne@68 27792 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 27793 #pragma GCC diagnostic pop
jpayne@68 27794 #endif
jpayne@68 27795 const int is_unsigned = neg_one > const_zero;
jpayne@68 27796 if (is_unsigned) {
jpayne@68 27797 if (sizeof(int) < sizeof(long)) {
jpayne@68 27798 return PyInt_FromLong((long) value);
jpayne@68 27799 } else if (sizeof(int) <= sizeof(unsigned long)) {
jpayne@68 27800 return PyLong_FromUnsignedLong((unsigned long) value);
jpayne@68 27801 #ifdef HAVE_LONG_LONG
jpayne@68 27802 } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
jpayne@68 27803 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
jpayne@68 27804 #endif
jpayne@68 27805 }
jpayne@68 27806 } else {
jpayne@68 27807 if (sizeof(int) <= sizeof(long)) {
jpayne@68 27808 return PyInt_FromLong((long) value);
jpayne@68 27809 #ifdef HAVE_LONG_LONG
jpayne@68 27810 } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
jpayne@68 27811 return PyLong_FromLongLong((PY_LONG_LONG) value);
jpayne@68 27812 #endif
jpayne@68 27813 }
jpayne@68 27814 }
jpayne@68 27815 {
jpayne@68 27816 unsigned char *bytes = (unsigned char *)&value;
jpayne@68 27817 #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4
jpayne@68 27818 if (is_unsigned) {
jpayne@68 27819 return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1);
jpayne@68 27820 } else {
jpayne@68 27821 return PyLong_FromNativeBytes(bytes, sizeof(value), -1);
jpayne@68 27822 }
jpayne@68 27823 #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000
jpayne@68 27824 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 27825 return _PyLong_FromByteArray(bytes, sizeof(int),
jpayne@68 27826 little, !is_unsigned);
jpayne@68 27827 #else
jpayne@68 27828 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 27829 PyObject *from_bytes, *result = NULL;
jpayne@68 27830 PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL;
jpayne@68 27831 from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes");
jpayne@68 27832 if (!from_bytes) return NULL;
jpayne@68 27833 py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int));
jpayne@68 27834 if (!py_bytes) goto limited_bad;
jpayne@68 27835 order_str = PyUnicode_FromString(little ? "little" : "big");
jpayne@68 27836 if (!order_str) goto limited_bad;
jpayne@68 27837 arg_tuple = PyTuple_Pack(2, py_bytes, order_str);
jpayne@68 27838 if (!arg_tuple) goto limited_bad;
jpayne@68 27839 if (!is_unsigned) {
jpayne@68 27840 kwds = PyDict_New();
jpayne@68 27841 if (!kwds) goto limited_bad;
jpayne@68 27842 if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad;
jpayne@68 27843 }
jpayne@68 27844 result = PyObject_Call(from_bytes, arg_tuple, kwds);
jpayne@68 27845 limited_bad:
jpayne@68 27846 Py_XDECREF(kwds);
jpayne@68 27847 Py_XDECREF(arg_tuple);
jpayne@68 27848 Py_XDECREF(order_str);
jpayne@68 27849 Py_XDECREF(py_bytes);
jpayne@68 27850 Py_XDECREF(from_bytes);
jpayne@68 27851 return result;
jpayne@68 27852 #endif
jpayne@68 27853 }
jpayne@68 27854 }
jpayne@68 27855
jpayne@68 27856 /* CIntFromPy */
jpayne@68 27857 static CYTHON_INLINE uint64_t __Pyx_PyInt_As_uint64_t(PyObject *x) {
jpayne@68 27858 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 27859 #pragma GCC diagnostic push
jpayne@68 27860 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 27861 #endif
jpayne@68 27862 const uint64_t neg_one = (uint64_t) -1, const_zero = (uint64_t) 0;
jpayne@68 27863 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 27864 #pragma GCC diagnostic pop
jpayne@68 27865 #endif
jpayne@68 27866 const int is_unsigned = neg_one > const_zero;
jpayne@68 27867 #if PY_MAJOR_VERSION < 3
jpayne@68 27868 if (likely(PyInt_Check(x))) {
jpayne@68 27869 if ((sizeof(uint64_t) < sizeof(long))) {
jpayne@68 27870 __PYX_VERIFY_RETURN_INT(uint64_t, long, PyInt_AS_LONG(x))
jpayne@68 27871 } else {
jpayne@68 27872 long val = PyInt_AS_LONG(x);
jpayne@68 27873 if (is_unsigned && unlikely(val < 0)) {
jpayne@68 27874 goto raise_neg_overflow;
jpayne@68 27875 }
jpayne@68 27876 return (uint64_t) val;
jpayne@68 27877 }
jpayne@68 27878 }
jpayne@68 27879 #endif
jpayne@68 27880 if (unlikely(!PyLong_Check(x))) {
jpayne@68 27881 uint64_t val;
jpayne@68 27882 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
jpayne@68 27883 if (!tmp) return (uint64_t) -1;
jpayne@68 27884 val = __Pyx_PyInt_As_uint64_t(tmp);
jpayne@68 27885 Py_DECREF(tmp);
jpayne@68 27886 return val;
jpayne@68 27887 }
jpayne@68 27888 if (is_unsigned) {
jpayne@68 27889 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 27890 if (unlikely(__Pyx_PyLong_IsNeg(x))) {
jpayne@68 27891 goto raise_neg_overflow;
jpayne@68 27892 } else if (__Pyx_PyLong_IsCompact(x)) {
jpayne@68 27893 __PYX_VERIFY_RETURN_INT(uint64_t, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x))
jpayne@68 27894 } else {
jpayne@68 27895 const digit* digits = __Pyx_PyLong_Digits(x);
jpayne@68 27896 assert(__Pyx_PyLong_DigitCount(x) > 1);
jpayne@68 27897 switch (__Pyx_PyLong_DigitCount(x)) {
jpayne@68 27898 case 2:
jpayne@68 27899 if ((8 * sizeof(uint64_t) > 1 * PyLong_SHIFT)) {
jpayne@68 27900 if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) {
jpayne@68 27901 __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27902 } else if ((8 * sizeof(uint64_t) >= 2 * PyLong_SHIFT)) {
jpayne@68 27903 return (uint64_t) (((((uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0]));
jpayne@68 27904 }
jpayne@68 27905 }
jpayne@68 27906 break;
jpayne@68 27907 case 3:
jpayne@68 27908 if ((8 * sizeof(uint64_t) > 2 * PyLong_SHIFT)) {
jpayne@68 27909 if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) {
jpayne@68 27910 __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27911 } else if ((8 * sizeof(uint64_t) >= 3 * PyLong_SHIFT)) {
jpayne@68 27912 return (uint64_t) (((((((uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0]));
jpayne@68 27913 }
jpayne@68 27914 }
jpayne@68 27915 break;
jpayne@68 27916 case 4:
jpayne@68 27917 if ((8 * sizeof(uint64_t) > 3 * PyLong_SHIFT)) {
jpayne@68 27918 if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) {
jpayne@68 27919 __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27920 } else if ((8 * sizeof(uint64_t) >= 4 * PyLong_SHIFT)) {
jpayne@68 27921 return (uint64_t) (((((((((uint64_t)digits[3]) << PyLong_SHIFT) | (uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0]));
jpayne@68 27922 }
jpayne@68 27923 }
jpayne@68 27924 break;
jpayne@68 27925 }
jpayne@68 27926 }
jpayne@68 27927 #endif
jpayne@68 27928 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7
jpayne@68 27929 if (unlikely(Py_SIZE(x) < 0)) {
jpayne@68 27930 goto raise_neg_overflow;
jpayne@68 27931 }
jpayne@68 27932 #else
jpayne@68 27933 {
jpayne@68 27934 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
jpayne@68 27935 if (unlikely(result < 0))
jpayne@68 27936 return (uint64_t) -1;
jpayne@68 27937 if (unlikely(result == 1))
jpayne@68 27938 goto raise_neg_overflow;
jpayne@68 27939 }
jpayne@68 27940 #endif
jpayne@68 27941 if ((sizeof(uint64_t) <= sizeof(unsigned long))) {
jpayne@68 27942 __PYX_VERIFY_RETURN_INT_EXC(uint64_t, unsigned long, PyLong_AsUnsignedLong(x))
jpayne@68 27943 #ifdef HAVE_LONG_LONG
jpayne@68 27944 } else if ((sizeof(uint64_t) <= sizeof(unsigned PY_LONG_LONG))) {
jpayne@68 27945 __PYX_VERIFY_RETURN_INT_EXC(uint64_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
jpayne@68 27946 #endif
jpayne@68 27947 }
jpayne@68 27948 } else {
jpayne@68 27949 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 27950 if (__Pyx_PyLong_IsCompact(x)) {
jpayne@68 27951 __PYX_VERIFY_RETURN_INT(uint64_t, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x))
jpayne@68 27952 } else {
jpayne@68 27953 const digit* digits = __Pyx_PyLong_Digits(x);
jpayne@68 27954 assert(__Pyx_PyLong_DigitCount(x) > 1);
jpayne@68 27955 switch (__Pyx_PyLong_SignedDigitCount(x)) {
jpayne@68 27956 case -2:
jpayne@68 27957 if ((8 * sizeof(uint64_t) - 1 > 1 * PyLong_SHIFT)) {
jpayne@68 27958 if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) {
jpayne@68 27959 __PYX_VERIFY_RETURN_INT(uint64_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27960 } else if ((8 * sizeof(uint64_t) - 1 > 2 * PyLong_SHIFT)) {
jpayne@68 27961 return (uint64_t) (((uint64_t)-1)*(((((uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])));
jpayne@68 27962 }
jpayne@68 27963 }
jpayne@68 27964 break;
jpayne@68 27965 case 2:
jpayne@68 27966 if ((8 * sizeof(uint64_t) > 1 * PyLong_SHIFT)) {
jpayne@68 27967 if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) {
jpayne@68 27968 __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27969 } else if ((8 * sizeof(uint64_t) - 1 > 2 * PyLong_SHIFT)) {
jpayne@68 27970 return (uint64_t) ((((((uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])));
jpayne@68 27971 }
jpayne@68 27972 }
jpayne@68 27973 break;
jpayne@68 27974 case -3:
jpayne@68 27975 if ((8 * sizeof(uint64_t) - 1 > 2 * PyLong_SHIFT)) {
jpayne@68 27976 if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) {
jpayne@68 27977 __PYX_VERIFY_RETURN_INT(uint64_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27978 } else if ((8 * sizeof(uint64_t) - 1 > 3 * PyLong_SHIFT)) {
jpayne@68 27979 return (uint64_t) (((uint64_t)-1)*(((((((uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])));
jpayne@68 27980 }
jpayne@68 27981 }
jpayne@68 27982 break;
jpayne@68 27983 case 3:
jpayne@68 27984 if ((8 * sizeof(uint64_t) > 2 * PyLong_SHIFT)) {
jpayne@68 27985 if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) {
jpayne@68 27986 __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27987 } else if ((8 * sizeof(uint64_t) - 1 > 3 * PyLong_SHIFT)) {
jpayne@68 27988 return (uint64_t) ((((((((uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])));
jpayne@68 27989 }
jpayne@68 27990 }
jpayne@68 27991 break;
jpayne@68 27992 case -4:
jpayne@68 27993 if ((8 * sizeof(uint64_t) - 1 > 3 * PyLong_SHIFT)) {
jpayne@68 27994 if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) {
jpayne@68 27995 __PYX_VERIFY_RETURN_INT(uint64_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 27996 } else if ((8 * sizeof(uint64_t) - 1 > 4 * PyLong_SHIFT)) {
jpayne@68 27997 return (uint64_t) (((uint64_t)-1)*(((((((((uint64_t)digits[3]) << PyLong_SHIFT) | (uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])));
jpayne@68 27998 }
jpayne@68 27999 }
jpayne@68 28000 break;
jpayne@68 28001 case 4:
jpayne@68 28002 if ((8 * sizeof(uint64_t) > 3 * PyLong_SHIFT)) {
jpayne@68 28003 if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) {
jpayne@68 28004 __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 28005 } else if ((8 * sizeof(uint64_t) - 1 > 4 * PyLong_SHIFT)) {
jpayne@68 28006 return (uint64_t) ((((((((((uint64_t)digits[3]) << PyLong_SHIFT) | (uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])));
jpayne@68 28007 }
jpayne@68 28008 }
jpayne@68 28009 break;
jpayne@68 28010 }
jpayne@68 28011 }
jpayne@68 28012 #endif
jpayne@68 28013 if ((sizeof(uint64_t) <= sizeof(long))) {
jpayne@68 28014 __PYX_VERIFY_RETURN_INT_EXC(uint64_t, long, PyLong_AsLong(x))
jpayne@68 28015 #ifdef HAVE_LONG_LONG
jpayne@68 28016 } else if ((sizeof(uint64_t) <= sizeof(PY_LONG_LONG))) {
jpayne@68 28017 __PYX_VERIFY_RETURN_INT_EXC(uint64_t, PY_LONG_LONG, PyLong_AsLongLong(x))
jpayne@68 28018 #endif
jpayne@68 28019 }
jpayne@68 28020 }
jpayne@68 28021 {
jpayne@68 28022 uint64_t val;
jpayne@68 28023 int ret = -1;
jpayne@68 28024 #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 28025 Py_ssize_t bytes_copied = PyLong_AsNativeBytes(
jpayne@68 28026 x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0));
jpayne@68 28027 if (unlikely(bytes_copied == -1)) {
jpayne@68 28028 } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) {
jpayne@68 28029 goto raise_overflow;
jpayne@68 28030 } else {
jpayne@68 28031 ret = 0;
jpayne@68 28032 }
jpayne@68 28033 #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray)
jpayne@68 28034 int one = 1; int is_little = (int)*(unsigned char *)&one;
jpayne@68 28035 unsigned char *bytes = (unsigned char *)&val;
jpayne@68 28036 ret = _PyLong_AsByteArray((PyLongObject *)x,
jpayne@68 28037 bytes, sizeof(val),
jpayne@68 28038 is_little, !is_unsigned);
jpayne@68 28039 #else
jpayne@68 28040 PyObject *v;
jpayne@68 28041 PyObject *stepval = NULL, *mask = NULL, *shift = NULL;
jpayne@68 28042 int bits, remaining_bits, is_negative = 0;
jpayne@68 28043 int chunk_size = (sizeof(long) < 8) ? 30 : 62;
jpayne@68 28044 if (likely(PyLong_CheckExact(x))) {
jpayne@68 28045 v = __Pyx_NewRef(x);
jpayne@68 28046 } else {
jpayne@68 28047 v = PyNumber_Long(x);
jpayne@68 28048 if (unlikely(!v)) return (uint64_t) -1;
jpayne@68 28049 assert(PyLong_CheckExact(v));
jpayne@68 28050 }
jpayne@68 28051 {
jpayne@68 28052 int result = PyObject_RichCompareBool(v, Py_False, Py_LT);
jpayne@68 28053 if (unlikely(result < 0)) {
jpayne@68 28054 Py_DECREF(v);
jpayne@68 28055 return (uint64_t) -1;
jpayne@68 28056 }
jpayne@68 28057 is_negative = result == 1;
jpayne@68 28058 }
jpayne@68 28059 if (is_unsigned && unlikely(is_negative)) {
jpayne@68 28060 Py_DECREF(v);
jpayne@68 28061 goto raise_neg_overflow;
jpayne@68 28062 } else if (is_negative) {
jpayne@68 28063 stepval = PyNumber_Invert(v);
jpayne@68 28064 Py_DECREF(v);
jpayne@68 28065 if (unlikely(!stepval))
jpayne@68 28066 return (uint64_t) -1;
jpayne@68 28067 } else {
jpayne@68 28068 stepval = v;
jpayne@68 28069 }
jpayne@68 28070 v = NULL;
jpayne@68 28071 val = (uint64_t) 0;
jpayne@68 28072 mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done;
jpayne@68 28073 shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done;
jpayne@68 28074 for (bits = 0; bits < (int) sizeof(uint64_t) * 8 - chunk_size; bits += chunk_size) {
jpayne@68 28075 PyObject *tmp, *digit;
jpayne@68 28076 long idigit;
jpayne@68 28077 digit = PyNumber_And(stepval, mask);
jpayne@68 28078 if (unlikely(!digit)) goto done;
jpayne@68 28079 idigit = PyLong_AsLong(digit);
jpayne@68 28080 Py_DECREF(digit);
jpayne@68 28081 if (unlikely(idigit < 0)) goto done;
jpayne@68 28082 val |= ((uint64_t) idigit) << bits;
jpayne@68 28083 tmp = PyNumber_Rshift(stepval, shift);
jpayne@68 28084 if (unlikely(!tmp)) goto done;
jpayne@68 28085 Py_DECREF(stepval); stepval = tmp;
jpayne@68 28086 }
jpayne@68 28087 Py_DECREF(shift); shift = NULL;
jpayne@68 28088 Py_DECREF(mask); mask = NULL;
jpayne@68 28089 {
jpayne@68 28090 long idigit = PyLong_AsLong(stepval);
jpayne@68 28091 if (unlikely(idigit < 0)) goto done;
jpayne@68 28092 remaining_bits = ((int) sizeof(uint64_t) * 8) - bits - (is_unsigned ? 0 : 1);
jpayne@68 28093 if (unlikely(idigit >= (1L << remaining_bits)))
jpayne@68 28094 goto raise_overflow;
jpayne@68 28095 val |= ((uint64_t) idigit) << bits;
jpayne@68 28096 }
jpayne@68 28097 if (!is_unsigned) {
jpayne@68 28098 if (unlikely(val & (((uint64_t) 1) << (sizeof(uint64_t) * 8 - 1))))
jpayne@68 28099 goto raise_overflow;
jpayne@68 28100 if (is_negative)
jpayne@68 28101 val = ~val;
jpayne@68 28102 }
jpayne@68 28103 ret = 0;
jpayne@68 28104 done:
jpayne@68 28105 Py_XDECREF(shift);
jpayne@68 28106 Py_XDECREF(mask);
jpayne@68 28107 Py_XDECREF(stepval);
jpayne@68 28108 #endif
jpayne@68 28109 if (unlikely(ret))
jpayne@68 28110 return (uint64_t) -1;
jpayne@68 28111 return val;
jpayne@68 28112 }
jpayne@68 28113 raise_overflow:
jpayne@68 28114 PyErr_SetString(PyExc_OverflowError,
jpayne@68 28115 "value too large to convert to uint64_t");
jpayne@68 28116 return (uint64_t) -1;
jpayne@68 28117 raise_neg_overflow:
jpayne@68 28118 PyErr_SetString(PyExc_OverflowError,
jpayne@68 28119 "can't convert negative value to uint64_t");
jpayne@68 28120 return (uint64_t) -1;
jpayne@68 28121 }
jpayne@68 28122
jpayne@68 28123 /* CIntToPy */
jpayne@68 28124 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_off_t(off_t value) {
jpayne@68 28125 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28126 #pragma GCC diagnostic push
jpayne@68 28127 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 28128 #endif
jpayne@68 28129 const off_t neg_one = (off_t) -1, const_zero = (off_t) 0;
jpayne@68 28130 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28131 #pragma GCC diagnostic pop
jpayne@68 28132 #endif
jpayne@68 28133 const int is_unsigned = neg_one > const_zero;
jpayne@68 28134 if (is_unsigned) {
jpayne@68 28135 if (sizeof(off_t) < sizeof(long)) {
jpayne@68 28136 return PyInt_FromLong((long) value);
jpayne@68 28137 } else if (sizeof(off_t) <= sizeof(unsigned long)) {
jpayne@68 28138 return PyLong_FromUnsignedLong((unsigned long) value);
jpayne@68 28139 #ifdef HAVE_LONG_LONG
jpayne@68 28140 } else if (sizeof(off_t) <= sizeof(unsigned PY_LONG_LONG)) {
jpayne@68 28141 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
jpayne@68 28142 #endif
jpayne@68 28143 }
jpayne@68 28144 } else {
jpayne@68 28145 if (sizeof(off_t) <= sizeof(long)) {
jpayne@68 28146 return PyInt_FromLong((long) value);
jpayne@68 28147 #ifdef HAVE_LONG_LONG
jpayne@68 28148 } else if (sizeof(off_t) <= sizeof(PY_LONG_LONG)) {
jpayne@68 28149 return PyLong_FromLongLong((PY_LONG_LONG) value);
jpayne@68 28150 #endif
jpayne@68 28151 }
jpayne@68 28152 }
jpayne@68 28153 {
jpayne@68 28154 unsigned char *bytes = (unsigned char *)&value;
jpayne@68 28155 #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4
jpayne@68 28156 if (is_unsigned) {
jpayne@68 28157 return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28158 } else {
jpayne@68 28159 return PyLong_FromNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28160 }
jpayne@68 28161 #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000
jpayne@68 28162 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28163 return _PyLong_FromByteArray(bytes, sizeof(off_t),
jpayne@68 28164 little, !is_unsigned);
jpayne@68 28165 #else
jpayne@68 28166 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28167 PyObject *from_bytes, *result = NULL;
jpayne@68 28168 PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL;
jpayne@68 28169 from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes");
jpayne@68 28170 if (!from_bytes) return NULL;
jpayne@68 28171 py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(off_t));
jpayne@68 28172 if (!py_bytes) goto limited_bad;
jpayne@68 28173 order_str = PyUnicode_FromString(little ? "little" : "big");
jpayne@68 28174 if (!order_str) goto limited_bad;
jpayne@68 28175 arg_tuple = PyTuple_Pack(2, py_bytes, order_str);
jpayne@68 28176 if (!arg_tuple) goto limited_bad;
jpayne@68 28177 if (!is_unsigned) {
jpayne@68 28178 kwds = PyDict_New();
jpayne@68 28179 if (!kwds) goto limited_bad;
jpayne@68 28180 if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad;
jpayne@68 28181 }
jpayne@68 28182 result = PyObject_Call(from_bytes, arg_tuple, kwds);
jpayne@68 28183 limited_bad:
jpayne@68 28184 Py_XDECREF(kwds);
jpayne@68 28185 Py_XDECREF(arg_tuple);
jpayne@68 28186 Py_XDECREF(order_str);
jpayne@68 28187 Py_XDECREF(py_bytes);
jpayne@68 28188 Py_XDECREF(from_bytes);
jpayne@68 28189 return result;
jpayne@68 28190 #endif
jpayne@68 28191 }
jpayne@68 28192 }
jpayne@68 28193
jpayne@68 28194 /* CIntToPy */
jpayne@68 28195 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__htsFormatCategory(enum htsFormatCategory value) {
jpayne@68 28196 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28197 #pragma GCC diagnostic push
jpayne@68 28198 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 28199 #endif
jpayne@68 28200 const enum htsFormatCategory neg_one = (enum htsFormatCategory) -1, const_zero = (enum htsFormatCategory) 0;
jpayne@68 28201 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28202 #pragma GCC diagnostic pop
jpayne@68 28203 #endif
jpayne@68 28204 const int is_unsigned = neg_one > const_zero;
jpayne@68 28205 if (is_unsigned) {
jpayne@68 28206 if (sizeof(enum htsFormatCategory) < sizeof(long)) {
jpayne@68 28207 return PyInt_FromLong((long) value);
jpayne@68 28208 } else if (sizeof(enum htsFormatCategory) <= sizeof(unsigned long)) {
jpayne@68 28209 return PyLong_FromUnsignedLong((unsigned long) value);
jpayne@68 28210 #ifdef HAVE_LONG_LONG
jpayne@68 28211 } else if (sizeof(enum htsFormatCategory) <= sizeof(unsigned PY_LONG_LONG)) {
jpayne@68 28212 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
jpayne@68 28213 #endif
jpayne@68 28214 }
jpayne@68 28215 } else {
jpayne@68 28216 if (sizeof(enum htsFormatCategory) <= sizeof(long)) {
jpayne@68 28217 return PyInt_FromLong((long) value);
jpayne@68 28218 #ifdef HAVE_LONG_LONG
jpayne@68 28219 } else if (sizeof(enum htsFormatCategory) <= sizeof(PY_LONG_LONG)) {
jpayne@68 28220 return PyLong_FromLongLong((PY_LONG_LONG) value);
jpayne@68 28221 #endif
jpayne@68 28222 }
jpayne@68 28223 }
jpayne@68 28224 {
jpayne@68 28225 unsigned char *bytes = (unsigned char *)&value;
jpayne@68 28226 #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4
jpayne@68 28227 if (is_unsigned) {
jpayne@68 28228 return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28229 } else {
jpayne@68 28230 return PyLong_FromNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28231 }
jpayne@68 28232 #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000
jpayne@68 28233 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28234 return _PyLong_FromByteArray(bytes, sizeof(enum htsFormatCategory),
jpayne@68 28235 little, !is_unsigned);
jpayne@68 28236 #else
jpayne@68 28237 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28238 PyObject *from_bytes, *result = NULL;
jpayne@68 28239 PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL;
jpayne@68 28240 from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes");
jpayne@68 28241 if (!from_bytes) return NULL;
jpayne@68 28242 py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(enum htsFormatCategory));
jpayne@68 28243 if (!py_bytes) goto limited_bad;
jpayne@68 28244 order_str = PyUnicode_FromString(little ? "little" : "big");
jpayne@68 28245 if (!order_str) goto limited_bad;
jpayne@68 28246 arg_tuple = PyTuple_Pack(2, py_bytes, order_str);
jpayne@68 28247 if (!arg_tuple) goto limited_bad;
jpayne@68 28248 if (!is_unsigned) {
jpayne@68 28249 kwds = PyDict_New();
jpayne@68 28250 if (!kwds) goto limited_bad;
jpayne@68 28251 if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad;
jpayne@68 28252 }
jpayne@68 28253 result = PyObject_Call(from_bytes, arg_tuple, kwds);
jpayne@68 28254 limited_bad:
jpayne@68 28255 Py_XDECREF(kwds);
jpayne@68 28256 Py_XDECREF(arg_tuple);
jpayne@68 28257 Py_XDECREF(order_str);
jpayne@68 28258 Py_XDECREF(py_bytes);
jpayne@68 28259 Py_XDECREF(from_bytes);
jpayne@68 28260 return result;
jpayne@68 28261 #endif
jpayne@68 28262 }
jpayne@68 28263 }
jpayne@68 28264
jpayne@68 28265 /* CIntToPy */
jpayne@68 28266 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__htsExactFormat(enum htsExactFormat value) {
jpayne@68 28267 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28268 #pragma GCC diagnostic push
jpayne@68 28269 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 28270 #endif
jpayne@68 28271 const enum htsExactFormat neg_one = (enum htsExactFormat) -1, const_zero = (enum htsExactFormat) 0;
jpayne@68 28272 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28273 #pragma GCC diagnostic pop
jpayne@68 28274 #endif
jpayne@68 28275 const int is_unsigned = neg_one > const_zero;
jpayne@68 28276 if (is_unsigned) {
jpayne@68 28277 if (sizeof(enum htsExactFormat) < sizeof(long)) {
jpayne@68 28278 return PyInt_FromLong((long) value);
jpayne@68 28279 } else if (sizeof(enum htsExactFormat) <= sizeof(unsigned long)) {
jpayne@68 28280 return PyLong_FromUnsignedLong((unsigned long) value);
jpayne@68 28281 #ifdef HAVE_LONG_LONG
jpayne@68 28282 } else if (sizeof(enum htsExactFormat) <= sizeof(unsigned PY_LONG_LONG)) {
jpayne@68 28283 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
jpayne@68 28284 #endif
jpayne@68 28285 }
jpayne@68 28286 } else {
jpayne@68 28287 if (sizeof(enum htsExactFormat) <= sizeof(long)) {
jpayne@68 28288 return PyInt_FromLong((long) value);
jpayne@68 28289 #ifdef HAVE_LONG_LONG
jpayne@68 28290 } else if (sizeof(enum htsExactFormat) <= sizeof(PY_LONG_LONG)) {
jpayne@68 28291 return PyLong_FromLongLong((PY_LONG_LONG) value);
jpayne@68 28292 #endif
jpayne@68 28293 }
jpayne@68 28294 }
jpayne@68 28295 {
jpayne@68 28296 unsigned char *bytes = (unsigned char *)&value;
jpayne@68 28297 #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4
jpayne@68 28298 if (is_unsigned) {
jpayne@68 28299 return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28300 } else {
jpayne@68 28301 return PyLong_FromNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28302 }
jpayne@68 28303 #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000
jpayne@68 28304 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28305 return _PyLong_FromByteArray(bytes, sizeof(enum htsExactFormat),
jpayne@68 28306 little, !is_unsigned);
jpayne@68 28307 #else
jpayne@68 28308 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28309 PyObject *from_bytes, *result = NULL;
jpayne@68 28310 PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL;
jpayne@68 28311 from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes");
jpayne@68 28312 if (!from_bytes) return NULL;
jpayne@68 28313 py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(enum htsExactFormat));
jpayne@68 28314 if (!py_bytes) goto limited_bad;
jpayne@68 28315 order_str = PyUnicode_FromString(little ? "little" : "big");
jpayne@68 28316 if (!order_str) goto limited_bad;
jpayne@68 28317 arg_tuple = PyTuple_Pack(2, py_bytes, order_str);
jpayne@68 28318 if (!arg_tuple) goto limited_bad;
jpayne@68 28319 if (!is_unsigned) {
jpayne@68 28320 kwds = PyDict_New();
jpayne@68 28321 if (!kwds) goto limited_bad;
jpayne@68 28322 if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad;
jpayne@68 28323 }
jpayne@68 28324 result = PyObject_Call(from_bytes, arg_tuple, kwds);
jpayne@68 28325 limited_bad:
jpayne@68 28326 Py_XDECREF(kwds);
jpayne@68 28327 Py_XDECREF(arg_tuple);
jpayne@68 28328 Py_XDECREF(order_str);
jpayne@68 28329 Py_XDECREF(py_bytes);
jpayne@68 28330 Py_XDECREF(from_bytes);
jpayne@68 28331 return result;
jpayne@68 28332 #endif
jpayne@68 28333 }
jpayne@68 28334 }
jpayne@68 28335
jpayne@68 28336 /* CIntToPy */
jpayne@68 28337 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_short(short value) {
jpayne@68 28338 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28339 #pragma GCC diagnostic push
jpayne@68 28340 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 28341 #endif
jpayne@68 28342 const short neg_one = (short) -1, const_zero = (short) 0;
jpayne@68 28343 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28344 #pragma GCC diagnostic pop
jpayne@68 28345 #endif
jpayne@68 28346 const int is_unsigned = neg_one > const_zero;
jpayne@68 28347 if (is_unsigned) {
jpayne@68 28348 if (sizeof(short) < sizeof(long)) {
jpayne@68 28349 return PyInt_FromLong((long) value);
jpayne@68 28350 } else if (sizeof(short) <= sizeof(unsigned long)) {
jpayne@68 28351 return PyLong_FromUnsignedLong((unsigned long) value);
jpayne@68 28352 #ifdef HAVE_LONG_LONG
jpayne@68 28353 } else if (sizeof(short) <= sizeof(unsigned PY_LONG_LONG)) {
jpayne@68 28354 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
jpayne@68 28355 #endif
jpayne@68 28356 }
jpayne@68 28357 } else {
jpayne@68 28358 if (sizeof(short) <= sizeof(long)) {
jpayne@68 28359 return PyInt_FromLong((long) value);
jpayne@68 28360 #ifdef HAVE_LONG_LONG
jpayne@68 28361 } else if (sizeof(short) <= sizeof(PY_LONG_LONG)) {
jpayne@68 28362 return PyLong_FromLongLong((PY_LONG_LONG) value);
jpayne@68 28363 #endif
jpayne@68 28364 }
jpayne@68 28365 }
jpayne@68 28366 {
jpayne@68 28367 unsigned char *bytes = (unsigned char *)&value;
jpayne@68 28368 #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4
jpayne@68 28369 if (is_unsigned) {
jpayne@68 28370 return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28371 } else {
jpayne@68 28372 return PyLong_FromNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28373 }
jpayne@68 28374 #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000
jpayne@68 28375 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28376 return _PyLong_FromByteArray(bytes, sizeof(short),
jpayne@68 28377 little, !is_unsigned);
jpayne@68 28378 #else
jpayne@68 28379 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28380 PyObject *from_bytes, *result = NULL;
jpayne@68 28381 PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL;
jpayne@68 28382 from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes");
jpayne@68 28383 if (!from_bytes) return NULL;
jpayne@68 28384 py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(short));
jpayne@68 28385 if (!py_bytes) goto limited_bad;
jpayne@68 28386 order_str = PyUnicode_FromString(little ? "little" : "big");
jpayne@68 28387 if (!order_str) goto limited_bad;
jpayne@68 28388 arg_tuple = PyTuple_Pack(2, py_bytes, order_str);
jpayne@68 28389 if (!arg_tuple) goto limited_bad;
jpayne@68 28390 if (!is_unsigned) {
jpayne@68 28391 kwds = PyDict_New();
jpayne@68 28392 if (!kwds) goto limited_bad;
jpayne@68 28393 if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad;
jpayne@68 28394 }
jpayne@68 28395 result = PyObject_Call(from_bytes, arg_tuple, kwds);
jpayne@68 28396 limited_bad:
jpayne@68 28397 Py_XDECREF(kwds);
jpayne@68 28398 Py_XDECREF(arg_tuple);
jpayne@68 28399 Py_XDECREF(order_str);
jpayne@68 28400 Py_XDECREF(py_bytes);
jpayne@68 28401 Py_XDECREF(from_bytes);
jpayne@68 28402 return result;
jpayne@68 28403 #endif
jpayne@68 28404 }
jpayne@68 28405 }
jpayne@68 28406
jpayne@68 28407 /* CIntToPy */
jpayne@68 28408 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__htsCompression(enum htsCompression value) {
jpayne@68 28409 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28410 #pragma GCC diagnostic push
jpayne@68 28411 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 28412 #endif
jpayne@68 28413 const enum htsCompression neg_one = (enum htsCompression) -1, const_zero = (enum htsCompression) 0;
jpayne@68 28414 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28415 #pragma GCC diagnostic pop
jpayne@68 28416 #endif
jpayne@68 28417 const int is_unsigned = neg_one > const_zero;
jpayne@68 28418 if (is_unsigned) {
jpayne@68 28419 if (sizeof(enum htsCompression) < sizeof(long)) {
jpayne@68 28420 return PyInt_FromLong((long) value);
jpayne@68 28421 } else if (sizeof(enum htsCompression) <= sizeof(unsigned long)) {
jpayne@68 28422 return PyLong_FromUnsignedLong((unsigned long) value);
jpayne@68 28423 #ifdef HAVE_LONG_LONG
jpayne@68 28424 } else if (sizeof(enum htsCompression) <= sizeof(unsigned PY_LONG_LONG)) {
jpayne@68 28425 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
jpayne@68 28426 #endif
jpayne@68 28427 }
jpayne@68 28428 } else {
jpayne@68 28429 if (sizeof(enum htsCompression) <= sizeof(long)) {
jpayne@68 28430 return PyInt_FromLong((long) value);
jpayne@68 28431 #ifdef HAVE_LONG_LONG
jpayne@68 28432 } else if (sizeof(enum htsCompression) <= sizeof(PY_LONG_LONG)) {
jpayne@68 28433 return PyLong_FromLongLong((PY_LONG_LONG) value);
jpayne@68 28434 #endif
jpayne@68 28435 }
jpayne@68 28436 }
jpayne@68 28437 {
jpayne@68 28438 unsigned char *bytes = (unsigned char *)&value;
jpayne@68 28439 #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4
jpayne@68 28440 if (is_unsigned) {
jpayne@68 28441 return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28442 } else {
jpayne@68 28443 return PyLong_FromNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28444 }
jpayne@68 28445 #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000
jpayne@68 28446 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28447 return _PyLong_FromByteArray(bytes, sizeof(enum htsCompression),
jpayne@68 28448 little, !is_unsigned);
jpayne@68 28449 #else
jpayne@68 28450 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28451 PyObject *from_bytes, *result = NULL;
jpayne@68 28452 PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL;
jpayne@68 28453 from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes");
jpayne@68 28454 if (!from_bytes) return NULL;
jpayne@68 28455 py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(enum htsCompression));
jpayne@68 28456 if (!py_bytes) goto limited_bad;
jpayne@68 28457 order_str = PyUnicode_FromString(little ? "little" : "big");
jpayne@68 28458 if (!order_str) goto limited_bad;
jpayne@68 28459 arg_tuple = PyTuple_Pack(2, py_bytes, order_str);
jpayne@68 28460 if (!arg_tuple) goto limited_bad;
jpayne@68 28461 if (!is_unsigned) {
jpayne@68 28462 kwds = PyDict_New();
jpayne@68 28463 if (!kwds) goto limited_bad;
jpayne@68 28464 if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad;
jpayne@68 28465 }
jpayne@68 28466 result = PyObject_Call(from_bytes, arg_tuple, kwds);
jpayne@68 28467 limited_bad:
jpayne@68 28468 Py_XDECREF(kwds);
jpayne@68 28469 Py_XDECREF(arg_tuple);
jpayne@68 28470 Py_XDECREF(order_str);
jpayne@68 28471 Py_XDECREF(py_bytes);
jpayne@68 28472 Py_XDECREF(from_bytes);
jpayne@68 28473 return result;
jpayne@68 28474 #endif
jpayne@68 28475 }
jpayne@68 28476 }
jpayne@68 28477
jpayne@68 28478 /* CIntToPy */
jpayne@68 28479 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int64_t(int64_t value) {
jpayne@68 28480 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28481 #pragma GCC diagnostic push
jpayne@68 28482 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 28483 #endif
jpayne@68 28484 const int64_t neg_one = (int64_t) -1, const_zero = (int64_t) 0;
jpayne@68 28485 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28486 #pragma GCC diagnostic pop
jpayne@68 28487 #endif
jpayne@68 28488 const int is_unsigned = neg_one > const_zero;
jpayne@68 28489 if (is_unsigned) {
jpayne@68 28490 if (sizeof(int64_t) < sizeof(long)) {
jpayne@68 28491 return PyInt_FromLong((long) value);
jpayne@68 28492 } else if (sizeof(int64_t) <= sizeof(unsigned long)) {
jpayne@68 28493 return PyLong_FromUnsignedLong((unsigned long) value);
jpayne@68 28494 #ifdef HAVE_LONG_LONG
jpayne@68 28495 } else if (sizeof(int64_t) <= sizeof(unsigned PY_LONG_LONG)) {
jpayne@68 28496 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
jpayne@68 28497 #endif
jpayne@68 28498 }
jpayne@68 28499 } else {
jpayne@68 28500 if (sizeof(int64_t) <= sizeof(long)) {
jpayne@68 28501 return PyInt_FromLong((long) value);
jpayne@68 28502 #ifdef HAVE_LONG_LONG
jpayne@68 28503 } else if (sizeof(int64_t) <= sizeof(PY_LONG_LONG)) {
jpayne@68 28504 return PyLong_FromLongLong((PY_LONG_LONG) value);
jpayne@68 28505 #endif
jpayne@68 28506 }
jpayne@68 28507 }
jpayne@68 28508 {
jpayne@68 28509 unsigned char *bytes = (unsigned char *)&value;
jpayne@68 28510 #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4
jpayne@68 28511 if (is_unsigned) {
jpayne@68 28512 return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28513 } else {
jpayne@68 28514 return PyLong_FromNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28515 }
jpayne@68 28516 #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000
jpayne@68 28517 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28518 return _PyLong_FromByteArray(bytes, sizeof(int64_t),
jpayne@68 28519 little, !is_unsigned);
jpayne@68 28520 #else
jpayne@68 28521 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28522 PyObject *from_bytes, *result = NULL;
jpayne@68 28523 PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL;
jpayne@68 28524 from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes");
jpayne@68 28525 if (!from_bytes) return NULL;
jpayne@68 28526 py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int64_t));
jpayne@68 28527 if (!py_bytes) goto limited_bad;
jpayne@68 28528 order_str = PyUnicode_FromString(little ? "little" : "big");
jpayne@68 28529 if (!order_str) goto limited_bad;
jpayne@68 28530 arg_tuple = PyTuple_Pack(2, py_bytes, order_str);
jpayne@68 28531 if (!arg_tuple) goto limited_bad;
jpayne@68 28532 if (!is_unsigned) {
jpayne@68 28533 kwds = PyDict_New();
jpayne@68 28534 if (!kwds) goto limited_bad;
jpayne@68 28535 if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad;
jpayne@68 28536 }
jpayne@68 28537 result = PyObject_Call(from_bytes, arg_tuple, kwds);
jpayne@68 28538 limited_bad:
jpayne@68 28539 Py_XDECREF(kwds);
jpayne@68 28540 Py_XDECREF(arg_tuple);
jpayne@68 28541 Py_XDECREF(order_str);
jpayne@68 28542 Py_XDECREF(py_bytes);
jpayne@68 28543 Py_XDECREF(from_bytes);
jpayne@68 28544 return result;
jpayne@68 28545 #endif
jpayne@68 28546 }
jpayne@68 28547 }
jpayne@68 28548
jpayne@68 28549 /* CIntFromPy */
jpayne@68 28550 static CYTHON_INLINE int32_t __Pyx_PyInt_As_int32_t(PyObject *x) {
jpayne@68 28551 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28552 #pragma GCC diagnostic push
jpayne@68 28553 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 28554 #endif
jpayne@68 28555 const int32_t neg_one = (int32_t) -1, const_zero = (int32_t) 0;
jpayne@68 28556 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28557 #pragma GCC diagnostic pop
jpayne@68 28558 #endif
jpayne@68 28559 const int is_unsigned = neg_one > const_zero;
jpayne@68 28560 #if PY_MAJOR_VERSION < 3
jpayne@68 28561 if (likely(PyInt_Check(x))) {
jpayne@68 28562 if ((sizeof(int32_t) < sizeof(long))) {
jpayne@68 28563 __PYX_VERIFY_RETURN_INT(int32_t, long, PyInt_AS_LONG(x))
jpayne@68 28564 } else {
jpayne@68 28565 long val = PyInt_AS_LONG(x);
jpayne@68 28566 if (is_unsigned && unlikely(val < 0)) {
jpayne@68 28567 goto raise_neg_overflow;
jpayne@68 28568 }
jpayne@68 28569 return (int32_t) val;
jpayne@68 28570 }
jpayne@68 28571 }
jpayne@68 28572 #endif
jpayne@68 28573 if (unlikely(!PyLong_Check(x))) {
jpayne@68 28574 int32_t val;
jpayne@68 28575 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
jpayne@68 28576 if (!tmp) return (int32_t) -1;
jpayne@68 28577 val = __Pyx_PyInt_As_int32_t(tmp);
jpayne@68 28578 Py_DECREF(tmp);
jpayne@68 28579 return val;
jpayne@68 28580 }
jpayne@68 28581 if (is_unsigned) {
jpayne@68 28582 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 28583 if (unlikely(__Pyx_PyLong_IsNeg(x))) {
jpayne@68 28584 goto raise_neg_overflow;
jpayne@68 28585 } else if (__Pyx_PyLong_IsCompact(x)) {
jpayne@68 28586 __PYX_VERIFY_RETURN_INT(int32_t, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x))
jpayne@68 28587 } else {
jpayne@68 28588 const digit* digits = __Pyx_PyLong_Digits(x);
jpayne@68 28589 assert(__Pyx_PyLong_DigitCount(x) > 1);
jpayne@68 28590 switch (__Pyx_PyLong_DigitCount(x)) {
jpayne@68 28591 case 2:
jpayne@68 28592 if ((8 * sizeof(int32_t) > 1 * PyLong_SHIFT)) {
jpayne@68 28593 if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) {
jpayne@68 28594 __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 28595 } else if ((8 * sizeof(int32_t) >= 2 * PyLong_SHIFT)) {
jpayne@68 28596 return (int32_t) (((((int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]));
jpayne@68 28597 }
jpayne@68 28598 }
jpayne@68 28599 break;
jpayne@68 28600 case 3:
jpayne@68 28601 if ((8 * sizeof(int32_t) > 2 * PyLong_SHIFT)) {
jpayne@68 28602 if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) {
jpayne@68 28603 __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 28604 } else if ((8 * sizeof(int32_t) >= 3 * PyLong_SHIFT)) {
jpayne@68 28605 return (int32_t) (((((((int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]));
jpayne@68 28606 }
jpayne@68 28607 }
jpayne@68 28608 break;
jpayne@68 28609 case 4:
jpayne@68 28610 if ((8 * sizeof(int32_t) > 3 * PyLong_SHIFT)) {
jpayne@68 28611 if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) {
jpayne@68 28612 __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 28613 } else if ((8 * sizeof(int32_t) >= 4 * PyLong_SHIFT)) {
jpayne@68 28614 return (int32_t) (((((((((int32_t)digits[3]) << PyLong_SHIFT) | (int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]));
jpayne@68 28615 }
jpayne@68 28616 }
jpayne@68 28617 break;
jpayne@68 28618 }
jpayne@68 28619 }
jpayne@68 28620 #endif
jpayne@68 28621 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7
jpayne@68 28622 if (unlikely(Py_SIZE(x) < 0)) {
jpayne@68 28623 goto raise_neg_overflow;
jpayne@68 28624 }
jpayne@68 28625 #else
jpayne@68 28626 {
jpayne@68 28627 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
jpayne@68 28628 if (unlikely(result < 0))
jpayne@68 28629 return (int32_t) -1;
jpayne@68 28630 if (unlikely(result == 1))
jpayne@68 28631 goto raise_neg_overflow;
jpayne@68 28632 }
jpayne@68 28633 #endif
jpayne@68 28634 if ((sizeof(int32_t) <= sizeof(unsigned long))) {
jpayne@68 28635 __PYX_VERIFY_RETURN_INT_EXC(int32_t, unsigned long, PyLong_AsUnsignedLong(x))
jpayne@68 28636 #ifdef HAVE_LONG_LONG
jpayne@68 28637 } else if ((sizeof(int32_t) <= sizeof(unsigned PY_LONG_LONG))) {
jpayne@68 28638 __PYX_VERIFY_RETURN_INT_EXC(int32_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
jpayne@68 28639 #endif
jpayne@68 28640 }
jpayne@68 28641 } else {
jpayne@68 28642 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 28643 if (__Pyx_PyLong_IsCompact(x)) {
jpayne@68 28644 __PYX_VERIFY_RETURN_INT(int32_t, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x))
jpayne@68 28645 } else {
jpayne@68 28646 const digit* digits = __Pyx_PyLong_Digits(x);
jpayne@68 28647 assert(__Pyx_PyLong_DigitCount(x) > 1);
jpayne@68 28648 switch (__Pyx_PyLong_SignedDigitCount(x)) {
jpayne@68 28649 case -2:
jpayne@68 28650 if ((8 * sizeof(int32_t) - 1 > 1 * PyLong_SHIFT)) {
jpayne@68 28651 if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) {
jpayne@68 28652 __PYX_VERIFY_RETURN_INT(int32_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 28653 } else if ((8 * sizeof(int32_t) - 1 > 2 * PyLong_SHIFT)) {
jpayne@68 28654 return (int32_t) (((int32_t)-1)*(((((int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])));
jpayne@68 28655 }
jpayne@68 28656 }
jpayne@68 28657 break;
jpayne@68 28658 case 2:
jpayne@68 28659 if ((8 * sizeof(int32_t) > 1 * PyLong_SHIFT)) {
jpayne@68 28660 if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) {
jpayne@68 28661 __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 28662 } else if ((8 * sizeof(int32_t) - 1 > 2 * PyLong_SHIFT)) {
jpayne@68 28663 return (int32_t) ((((((int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])));
jpayne@68 28664 }
jpayne@68 28665 }
jpayne@68 28666 break;
jpayne@68 28667 case -3:
jpayne@68 28668 if ((8 * sizeof(int32_t) - 1 > 2 * PyLong_SHIFT)) {
jpayne@68 28669 if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) {
jpayne@68 28670 __PYX_VERIFY_RETURN_INT(int32_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 28671 } else if ((8 * sizeof(int32_t) - 1 > 3 * PyLong_SHIFT)) {
jpayne@68 28672 return (int32_t) (((int32_t)-1)*(((((((int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])));
jpayne@68 28673 }
jpayne@68 28674 }
jpayne@68 28675 break;
jpayne@68 28676 case 3:
jpayne@68 28677 if ((8 * sizeof(int32_t) > 2 * PyLong_SHIFT)) {
jpayne@68 28678 if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) {
jpayne@68 28679 __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 28680 } else if ((8 * sizeof(int32_t) - 1 > 3 * PyLong_SHIFT)) {
jpayne@68 28681 return (int32_t) ((((((((int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])));
jpayne@68 28682 }
jpayne@68 28683 }
jpayne@68 28684 break;
jpayne@68 28685 case -4:
jpayne@68 28686 if ((8 * sizeof(int32_t) - 1 > 3 * PyLong_SHIFT)) {
jpayne@68 28687 if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) {
jpayne@68 28688 __PYX_VERIFY_RETURN_INT(int32_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 28689 } else if ((8 * sizeof(int32_t) - 1 > 4 * PyLong_SHIFT)) {
jpayne@68 28690 return (int32_t) (((int32_t)-1)*(((((((((int32_t)digits[3]) << PyLong_SHIFT) | (int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])));
jpayne@68 28691 }
jpayne@68 28692 }
jpayne@68 28693 break;
jpayne@68 28694 case 4:
jpayne@68 28695 if ((8 * sizeof(int32_t) > 3 * PyLong_SHIFT)) {
jpayne@68 28696 if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) {
jpayne@68 28697 __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 28698 } else if ((8 * sizeof(int32_t) - 1 > 4 * PyLong_SHIFT)) {
jpayne@68 28699 return (int32_t) ((((((((((int32_t)digits[3]) << PyLong_SHIFT) | (int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])));
jpayne@68 28700 }
jpayne@68 28701 }
jpayne@68 28702 break;
jpayne@68 28703 }
jpayne@68 28704 }
jpayne@68 28705 #endif
jpayne@68 28706 if ((sizeof(int32_t) <= sizeof(long))) {
jpayne@68 28707 __PYX_VERIFY_RETURN_INT_EXC(int32_t, long, PyLong_AsLong(x))
jpayne@68 28708 #ifdef HAVE_LONG_LONG
jpayne@68 28709 } else if ((sizeof(int32_t) <= sizeof(PY_LONG_LONG))) {
jpayne@68 28710 __PYX_VERIFY_RETURN_INT_EXC(int32_t, PY_LONG_LONG, PyLong_AsLongLong(x))
jpayne@68 28711 #endif
jpayne@68 28712 }
jpayne@68 28713 }
jpayne@68 28714 {
jpayne@68 28715 int32_t val;
jpayne@68 28716 int ret = -1;
jpayne@68 28717 #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 28718 Py_ssize_t bytes_copied = PyLong_AsNativeBytes(
jpayne@68 28719 x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0));
jpayne@68 28720 if (unlikely(bytes_copied == -1)) {
jpayne@68 28721 } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) {
jpayne@68 28722 goto raise_overflow;
jpayne@68 28723 } else {
jpayne@68 28724 ret = 0;
jpayne@68 28725 }
jpayne@68 28726 #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray)
jpayne@68 28727 int one = 1; int is_little = (int)*(unsigned char *)&one;
jpayne@68 28728 unsigned char *bytes = (unsigned char *)&val;
jpayne@68 28729 ret = _PyLong_AsByteArray((PyLongObject *)x,
jpayne@68 28730 bytes, sizeof(val),
jpayne@68 28731 is_little, !is_unsigned);
jpayne@68 28732 #else
jpayne@68 28733 PyObject *v;
jpayne@68 28734 PyObject *stepval = NULL, *mask = NULL, *shift = NULL;
jpayne@68 28735 int bits, remaining_bits, is_negative = 0;
jpayne@68 28736 int chunk_size = (sizeof(long) < 8) ? 30 : 62;
jpayne@68 28737 if (likely(PyLong_CheckExact(x))) {
jpayne@68 28738 v = __Pyx_NewRef(x);
jpayne@68 28739 } else {
jpayne@68 28740 v = PyNumber_Long(x);
jpayne@68 28741 if (unlikely(!v)) return (int32_t) -1;
jpayne@68 28742 assert(PyLong_CheckExact(v));
jpayne@68 28743 }
jpayne@68 28744 {
jpayne@68 28745 int result = PyObject_RichCompareBool(v, Py_False, Py_LT);
jpayne@68 28746 if (unlikely(result < 0)) {
jpayne@68 28747 Py_DECREF(v);
jpayne@68 28748 return (int32_t) -1;
jpayne@68 28749 }
jpayne@68 28750 is_negative = result == 1;
jpayne@68 28751 }
jpayne@68 28752 if (is_unsigned && unlikely(is_negative)) {
jpayne@68 28753 Py_DECREF(v);
jpayne@68 28754 goto raise_neg_overflow;
jpayne@68 28755 } else if (is_negative) {
jpayne@68 28756 stepval = PyNumber_Invert(v);
jpayne@68 28757 Py_DECREF(v);
jpayne@68 28758 if (unlikely(!stepval))
jpayne@68 28759 return (int32_t) -1;
jpayne@68 28760 } else {
jpayne@68 28761 stepval = v;
jpayne@68 28762 }
jpayne@68 28763 v = NULL;
jpayne@68 28764 val = (int32_t) 0;
jpayne@68 28765 mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done;
jpayne@68 28766 shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done;
jpayne@68 28767 for (bits = 0; bits < (int) sizeof(int32_t) * 8 - chunk_size; bits += chunk_size) {
jpayne@68 28768 PyObject *tmp, *digit;
jpayne@68 28769 long idigit;
jpayne@68 28770 digit = PyNumber_And(stepval, mask);
jpayne@68 28771 if (unlikely(!digit)) goto done;
jpayne@68 28772 idigit = PyLong_AsLong(digit);
jpayne@68 28773 Py_DECREF(digit);
jpayne@68 28774 if (unlikely(idigit < 0)) goto done;
jpayne@68 28775 val |= ((int32_t) idigit) << bits;
jpayne@68 28776 tmp = PyNumber_Rshift(stepval, shift);
jpayne@68 28777 if (unlikely(!tmp)) goto done;
jpayne@68 28778 Py_DECREF(stepval); stepval = tmp;
jpayne@68 28779 }
jpayne@68 28780 Py_DECREF(shift); shift = NULL;
jpayne@68 28781 Py_DECREF(mask); mask = NULL;
jpayne@68 28782 {
jpayne@68 28783 long idigit = PyLong_AsLong(stepval);
jpayne@68 28784 if (unlikely(idigit < 0)) goto done;
jpayne@68 28785 remaining_bits = ((int) sizeof(int32_t) * 8) - bits - (is_unsigned ? 0 : 1);
jpayne@68 28786 if (unlikely(idigit >= (1L << remaining_bits)))
jpayne@68 28787 goto raise_overflow;
jpayne@68 28788 val |= ((int32_t) idigit) << bits;
jpayne@68 28789 }
jpayne@68 28790 if (!is_unsigned) {
jpayne@68 28791 if (unlikely(val & (((int32_t) 1) << (sizeof(int32_t) * 8 - 1))))
jpayne@68 28792 goto raise_overflow;
jpayne@68 28793 if (is_negative)
jpayne@68 28794 val = ~val;
jpayne@68 28795 }
jpayne@68 28796 ret = 0;
jpayne@68 28797 done:
jpayne@68 28798 Py_XDECREF(shift);
jpayne@68 28799 Py_XDECREF(mask);
jpayne@68 28800 Py_XDECREF(stepval);
jpayne@68 28801 #endif
jpayne@68 28802 if (unlikely(ret))
jpayne@68 28803 return (int32_t) -1;
jpayne@68 28804 return val;
jpayne@68 28805 }
jpayne@68 28806 raise_overflow:
jpayne@68 28807 PyErr_SetString(PyExc_OverflowError,
jpayne@68 28808 "value too large to convert to int32_t");
jpayne@68 28809 return (int32_t) -1;
jpayne@68 28810 raise_neg_overflow:
jpayne@68 28811 PyErr_SetString(PyExc_OverflowError,
jpayne@68 28812 "can't convert negative value to int32_t");
jpayne@68 28813 return (int32_t) -1;
jpayne@68 28814 }
jpayne@68 28815
jpayne@68 28816 /* CIntToPy */
jpayne@68 28817 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
jpayne@68 28818 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28819 #pragma GCC diagnostic push
jpayne@68 28820 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 28821 #endif
jpayne@68 28822 const long neg_one = (long) -1, const_zero = (long) 0;
jpayne@68 28823 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28824 #pragma GCC diagnostic pop
jpayne@68 28825 #endif
jpayne@68 28826 const int is_unsigned = neg_one > const_zero;
jpayne@68 28827 if (is_unsigned) {
jpayne@68 28828 if (sizeof(long) < sizeof(long)) {
jpayne@68 28829 return PyInt_FromLong((long) value);
jpayne@68 28830 } else if (sizeof(long) <= sizeof(unsigned long)) {
jpayne@68 28831 return PyLong_FromUnsignedLong((unsigned long) value);
jpayne@68 28832 #ifdef HAVE_LONG_LONG
jpayne@68 28833 } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
jpayne@68 28834 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
jpayne@68 28835 #endif
jpayne@68 28836 }
jpayne@68 28837 } else {
jpayne@68 28838 if (sizeof(long) <= sizeof(long)) {
jpayne@68 28839 return PyInt_FromLong((long) value);
jpayne@68 28840 #ifdef HAVE_LONG_LONG
jpayne@68 28841 } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
jpayne@68 28842 return PyLong_FromLongLong((PY_LONG_LONG) value);
jpayne@68 28843 #endif
jpayne@68 28844 }
jpayne@68 28845 }
jpayne@68 28846 {
jpayne@68 28847 unsigned char *bytes = (unsigned char *)&value;
jpayne@68 28848 #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4
jpayne@68 28849 if (is_unsigned) {
jpayne@68 28850 return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28851 } else {
jpayne@68 28852 return PyLong_FromNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28853 }
jpayne@68 28854 #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000
jpayne@68 28855 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28856 return _PyLong_FromByteArray(bytes, sizeof(long),
jpayne@68 28857 little, !is_unsigned);
jpayne@68 28858 #else
jpayne@68 28859 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28860 PyObject *from_bytes, *result = NULL;
jpayne@68 28861 PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL;
jpayne@68 28862 from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes");
jpayne@68 28863 if (!from_bytes) return NULL;
jpayne@68 28864 py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(long));
jpayne@68 28865 if (!py_bytes) goto limited_bad;
jpayne@68 28866 order_str = PyUnicode_FromString(little ? "little" : "big");
jpayne@68 28867 if (!order_str) goto limited_bad;
jpayne@68 28868 arg_tuple = PyTuple_Pack(2, py_bytes, order_str);
jpayne@68 28869 if (!arg_tuple) goto limited_bad;
jpayne@68 28870 if (!is_unsigned) {
jpayne@68 28871 kwds = PyDict_New();
jpayne@68 28872 if (!kwds) goto limited_bad;
jpayne@68 28873 if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad;
jpayne@68 28874 }
jpayne@68 28875 result = PyObject_Call(from_bytes, arg_tuple, kwds);
jpayne@68 28876 limited_bad:
jpayne@68 28877 Py_XDECREF(kwds);
jpayne@68 28878 Py_XDECREF(arg_tuple);
jpayne@68 28879 Py_XDECREF(order_str);
jpayne@68 28880 Py_XDECREF(py_bytes);
jpayne@68 28881 Py_XDECREF(from_bytes);
jpayne@68 28882 return result;
jpayne@68 28883 #endif
jpayne@68 28884 }
jpayne@68 28885 }
jpayne@68 28886
jpayne@68 28887 /* CIntToPy */
jpayne@68 28888 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int32_t(int32_t value) {
jpayne@68 28889 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28890 #pragma GCC diagnostic push
jpayne@68 28891 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 28892 #endif
jpayne@68 28893 const int32_t neg_one = (int32_t) -1, const_zero = (int32_t) 0;
jpayne@68 28894 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28895 #pragma GCC diagnostic pop
jpayne@68 28896 #endif
jpayne@68 28897 const int is_unsigned = neg_one > const_zero;
jpayne@68 28898 if (is_unsigned) {
jpayne@68 28899 if (sizeof(int32_t) < sizeof(long)) {
jpayne@68 28900 return PyInt_FromLong((long) value);
jpayne@68 28901 } else if (sizeof(int32_t) <= sizeof(unsigned long)) {
jpayne@68 28902 return PyLong_FromUnsignedLong((unsigned long) value);
jpayne@68 28903 #ifdef HAVE_LONG_LONG
jpayne@68 28904 } else if (sizeof(int32_t) <= sizeof(unsigned PY_LONG_LONG)) {
jpayne@68 28905 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
jpayne@68 28906 #endif
jpayne@68 28907 }
jpayne@68 28908 } else {
jpayne@68 28909 if (sizeof(int32_t) <= sizeof(long)) {
jpayne@68 28910 return PyInt_FromLong((long) value);
jpayne@68 28911 #ifdef HAVE_LONG_LONG
jpayne@68 28912 } else if (sizeof(int32_t) <= sizeof(PY_LONG_LONG)) {
jpayne@68 28913 return PyLong_FromLongLong((PY_LONG_LONG) value);
jpayne@68 28914 #endif
jpayne@68 28915 }
jpayne@68 28916 }
jpayne@68 28917 {
jpayne@68 28918 unsigned char *bytes = (unsigned char *)&value;
jpayne@68 28919 #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4
jpayne@68 28920 if (is_unsigned) {
jpayne@68 28921 return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28922 } else {
jpayne@68 28923 return PyLong_FromNativeBytes(bytes, sizeof(value), -1);
jpayne@68 28924 }
jpayne@68 28925 #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000
jpayne@68 28926 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28927 return _PyLong_FromByteArray(bytes, sizeof(int32_t),
jpayne@68 28928 little, !is_unsigned);
jpayne@68 28929 #else
jpayne@68 28930 int one = 1; int little = (int)*(unsigned char *)&one;
jpayne@68 28931 PyObject *from_bytes, *result = NULL;
jpayne@68 28932 PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL;
jpayne@68 28933 from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes");
jpayne@68 28934 if (!from_bytes) return NULL;
jpayne@68 28935 py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int32_t));
jpayne@68 28936 if (!py_bytes) goto limited_bad;
jpayne@68 28937 order_str = PyUnicode_FromString(little ? "little" : "big");
jpayne@68 28938 if (!order_str) goto limited_bad;
jpayne@68 28939 arg_tuple = PyTuple_Pack(2, py_bytes, order_str);
jpayne@68 28940 if (!arg_tuple) goto limited_bad;
jpayne@68 28941 if (!is_unsigned) {
jpayne@68 28942 kwds = PyDict_New();
jpayne@68 28943 if (!kwds) goto limited_bad;
jpayne@68 28944 if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad;
jpayne@68 28945 }
jpayne@68 28946 result = PyObject_Call(from_bytes, arg_tuple, kwds);
jpayne@68 28947 limited_bad:
jpayne@68 28948 Py_XDECREF(kwds);
jpayne@68 28949 Py_XDECREF(arg_tuple);
jpayne@68 28950 Py_XDECREF(order_str);
jpayne@68 28951 Py_XDECREF(py_bytes);
jpayne@68 28952 Py_XDECREF(from_bytes);
jpayne@68 28953 return result;
jpayne@68 28954 #endif
jpayne@68 28955 }
jpayne@68 28956 }
jpayne@68 28957
jpayne@68 28958 /* FormatTypeName */
jpayne@68 28959 #if CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 28960 static __Pyx_TypeName
jpayne@68 28961 __Pyx_PyType_GetName(PyTypeObject* tp)
jpayne@68 28962 {
jpayne@68 28963 PyObject *name = __Pyx_PyObject_GetAttrStr((PyObject *)tp,
jpayne@68 28964 __pyx_n_s_name_2);
jpayne@68 28965 if (unlikely(name == NULL) || unlikely(!PyUnicode_Check(name))) {
jpayne@68 28966 PyErr_Clear();
jpayne@68 28967 Py_XDECREF(name);
jpayne@68 28968 name = __Pyx_NewRef(__pyx_n_s__97);
jpayne@68 28969 }
jpayne@68 28970 return name;
jpayne@68 28971 }
jpayne@68 28972 #endif
jpayne@68 28973
jpayne@68 28974 /* CIntFromPy */
jpayne@68 28975 static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
jpayne@68 28976 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28977 #pragma GCC diagnostic push
jpayne@68 28978 #pragma GCC diagnostic ignored "-Wconversion"
jpayne@68 28979 #endif
jpayne@68 28980 const long neg_one = (long) -1, const_zero = (long) 0;
jpayne@68 28981 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
jpayne@68 28982 #pragma GCC diagnostic pop
jpayne@68 28983 #endif
jpayne@68 28984 const int is_unsigned = neg_one > const_zero;
jpayne@68 28985 #if PY_MAJOR_VERSION < 3
jpayne@68 28986 if (likely(PyInt_Check(x))) {
jpayne@68 28987 if ((sizeof(long) < sizeof(long))) {
jpayne@68 28988 __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
jpayne@68 28989 } else {
jpayne@68 28990 long val = PyInt_AS_LONG(x);
jpayne@68 28991 if (is_unsigned && unlikely(val < 0)) {
jpayne@68 28992 goto raise_neg_overflow;
jpayne@68 28993 }
jpayne@68 28994 return (long) val;
jpayne@68 28995 }
jpayne@68 28996 }
jpayne@68 28997 #endif
jpayne@68 28998 if (unlikely(!PyLong_Check(x))) {
jpayne@68 28999 long val;
jpayne@68 29000 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
jpayne@68 29001 if (!tmp) return (long) -1;
jpayne@68 29002 val = __Pyx_PyInt_As_long(tmp);
jpayne@68 29003 Py_DECREF(tmp);
jpayne@68 29004 return val;
jpayne@68 29005 }
jpayne@68 29006 if (is_unsigned) {
jpayne@68 29007 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 29008 if (unlikely(__Pyx_PyLong_IsNeg(x))) {
jpayne@68 29009 goto raise_neg_overflow;
jpayne@68 29010 } else if (__Pyx_PyLong_IsCompact(x)) {
jpayne@68 29011 __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x))
jpayne@68 29012 } else {
jpayne@68 29013 const digit* digits = __Pyx_PyLong_Digits(x);
jpayne@68 29014 assert(__Pyx_PyLong_DigitCount(x) > 1);
jpayne@68 29015 switch (__Pyx_PyLong_DigitCount(x)) {
jpayne@68 29016 case 2:
jpayne@68 29017 if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) {
jpayne@68 29018 if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) {
jpayne@68 29019 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 29020 } else if ((8 * sizeof(long) >= 2 * PyLong_SHIFT)) {
jpayne@68 29021 return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
jpayne@68 29022 }
jpayne@68 29023 }
jpayne@68 29024 break;
jpayne@68 29025 case 3:
jpayne@68 29026 if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) {
jpayne@68 29027 if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) {
jpayne@68 29028 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 29029 } else if ((8 * sizeof(long) >= 3 * PyLong_SHIFT)) {
jpayne@68 29030 return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
jpayne@68 29031 }
jpayne@68 29032 }
jpayne@68 29033 break;
jpayne@68 29034 case 4:
jpayne@68 29035 if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) {
jpayne@68 29036 if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) {
jpayne@68 29037 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 29038 } else if ((8 * sizeof(long) >= 4 * PyLong_SHIFT)) {
jpayne@68 29039 return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
jpayne@68 29040 }
jpayne@68 29041 }
jpayne@68 29042 break;
jpayne@68 29043 }
jpayne@68 29044 }
jpayne@68 29045 #endif
jpayne@68 29046 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7
jpayne@68 29047 if (unlikely(Py_SIZE(x) < 0)) {
jpayne@68 29048 goto raise_neg_overflow;
jpayne@68 29049 }
jpayne@68 29050 #else
jpayne@68 29051 {
jpayne@68 29052 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
jpayne@68 29053 if (unlikely(result < 0))
jpayne@68 29054 return (long) -1;
jpayne@68 29055 if (unlikely(result == 1))
jpayne@68 29056 goto raise_neg_overflow;
jpayne@68 29057 }
jpayne@68 29058 #endif
jpayne@68 29059 if ((sizeof(long) <= sizeof(unsigned long))) {
jpayne@68 29060 __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x))
jpayne@68 29061 #ifdef HAVE_LONG_LONG
jpayne@68 29062 } else if ((sizeof(long) <= sizeof(unsigned PY_LONG_LONG))) {
jpayne@68 29063 __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
jpayne@68 29064 #endif
jpayne@68 29065 }
jpayne@68 29066 } else {
jpayne@68 29067 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 29068 if (__Pyx_PyLong_IsCompact(x)) {
jpayne@68 29069 __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x))
jpayne@68 29070 } else {
jpayne@68 29071 const digit* digits = __Pyx_PyLong_Digits(x);
jpayne@68 29072 assert(__Pyx_PyLong_DigitCount(x) > 1);
jpayne@68 29073 switch (__Pyx_PyLong_SignedDigitCount(x)) {
jpayne@68 29074 case -2:
jpayne@68 29075 if ((8 * sizeof(long) - 1 > 1 * PyLong_SHIFT)) {
jpayne@68 29076 if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) {
jpayne@68 29077 __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 29078 } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) {
jpayne@68 29079 return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
jpayne@68 29080 }
jpayne@68 29081 }
jpayne@68 29082 break;
jpayne@68 29083 case 2:
jpayne@68 29084 if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) {
jpayne@68 29085 if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) {
jpayne@68 29086 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 29087 } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) {
jpayne@68 29088 return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
jpayne@68 29089 }
jpayne@68 29090 }
jpayne@68 29091 break;
jpayne@68 29092 case -3:
jpayne@68 29093 if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) {
jpayne@68 29094 if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) {
jpayne@68 29095 __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 29096 } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) {
jpayne@68 29097 return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
jpayne@68 29098 }
jpayne@68 29099 }
jpayne@68 29100 break;
jpayne@68 29101 case 3:
jpayne@68 29102 if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) {
jpayne@68 29103 if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) {
jpayne@68 29104 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 29105 } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) {
jpayne@68 29106 return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
jpayne@68 29107 }
jpayne@68 29108 }
jpayne@68 29109 break;
jpayne@68 29110 case -4:
jpayne@68 29111 if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) {
jpayne@68 29112 if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) {
jpayne@68 29113 __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 29114 } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) {
jpayne@68 29115 return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
jpayne@68 29116 }
jpayne@68 29117 }
jpayne@68 29118 break;
jpayne@68 29119 case 4:
jpayne@68 29120 if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) {
jpayne@68 29121 if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) {
jpayne@68 29122 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
jpayne@68 29123 } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) {
jpayne@68 29124 return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
jpayne@68 29125 }
jpayne@68 29126 }
jpayne@68 29127 break;
jpayne@68 29128 }
jpayne@68 29129 }
jpayne@68 29130 #endif
jpayne@68 29131 if ((sizeof(long) <= sizeof(long))) {
jpayne@68 29132 __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x))
jpayne@68 29133 #ifdef HAVE_LONG_LONG
jpayne@68 29134 } else if ((sizeof(long) <= sizeof(PY_LONG_LONG))) {
jpayne@68 29135 __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x))
jpayne@68 29136 #endif
jpayne@68 29137 }
jpayne@68 29138 }
jpayne@68 29139 {
jpayne@68 29140 long val;
jpayne@68 29141 int ret = -1;
jpayne@68 29142 #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API
jpayne@68 29143 Py_ssize_t bytes_copied = PyLong_AsNativeBytes(
jpayne@68 29144 x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0));
jpayne@68 29145 if (unlikely(bytes_copied == -1)) {
jpayne@68 29146 } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) {
jpayne@68 29147 goto raise_overflow;
jpayne@68 29148 } else {
jpayne@68 29149 ret = 0;
jpayne@68 29150 }
jpayne@68 29151 #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray)
jpayne@68 29152 int one = 1; int is_little = (int)*(unsigned char *)&one;
jpayne@68 29153 unsigned char *bytes = (unsigned char *)&val;
jpayne@68 29154 ret = _PyLong_AsByteArray((PyLongObject *)x,
jpayne@68 29155 bytes, sizeof(val),
jpayne@68 29156 is_little, !is_unsigned);
jpayne@68 29157 #else
jpayne@68 29158 PyObject *v;
jpayne@68 29159 PyObject *stepval = NULL, *mask = NULL, *shift = NULL;
jpayne@68 29160 int bits, remaining_bits, is_negative = 0;
jpayne@68 29161 int chunk_size = (sizeof(long) < 8) ? 30 : 62;
jpayne@68 29162 if (likely(PyLong_CheckExact(x))) {
jpayne@68 29163 v = __Pyx_NewRef(x);
jpayne@68 29164 } else {
jpayne@68 29165 v = PyNumber_Long(x);
jpayne@68 29166 if (unlikely(!v)) return (long) -1;
jpayne@68 29167 assert(PyLong_CheckExact(v));
jpayne@68 29168 }
jpayne@68 29169 {
jpayne@68 29170 int result = PyObject_RichCompareBool(v, Py_False, Py_LT);
jpayne@68 29171 if (unlikely(result < 0)) {
jpayne@68 29172 Py_DECREF(v);
jpayne@68 29173 return (long) -1;
jpayne@68 29174 }
jpayne@68 29175 is_negative = result == 1;
jpayne@68 29176 }
jpayne@68 29177 if (is_unsigned && unlikely(is_negative)) {
jpayne@68 29178 Py_DECREF(v);
jpayne@68 29179 goto raise_neg_overflow;
jpayne@68 29180 } else if (is_negative) {
jpayne@68 29181 stepval = PyNumber_Invert(v);
jpayne@68 29182 Py_DECREF(v);
jpayne@68 29183 if (unlikely(!stepval))
jpayne@68 29184 return (long) -1;
jpayne@68 29185 } else {
jpayne@68 29186 stepval = v;
jpayne@68 29187 }
jpayne@68 29188 v = NULL;
jpayne@68 29189 val = (long) 0;
jpayne@68 29190 mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done;
jpayne@68 29191 shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done;
jpayne@68 29192 for (bits = 0; bits < (int) sizeof(long) * 8 - chunk_size; bits += chunk_size) {
jpayne@68 29193 PyObject *tmp, *digit;
jpayne@68 29194 long idigit;
jpayne@68 29195 digit = PyNumber_And(stepval, mask);
jpayne@68 29196 if (unlikely(!digit)) goto done;
jpayne@68 29197 idigit = PyLong_AsLong(digit);
jpayne@68 29198 Py_DECREF(digit);
jpayne@68 29199 if (unlikely(idigit < 0)) goto done;
jpayne@68 29200 val |= ((long) idigit) << bits;
jpayne@68 29201 tmp = PyNumber_Rshift(stepval, shift);
jpayne@68 29202 if (unlikely(!tmp)) goto done;
jpayne@68 29203 Py_DECREF(stepval); stepval = tmp;
jpayne@68 29204 }
jpayne@68 29205 Py_DECREF(shift); shift = NULL;
jpayne@68 29206 Py_DECREF(mask); mask = NULL;
jpayne@68 29207 {
jpayne@68 29208 long idigit = PyLong_AsLong(stepval);
jpayne@68 29209 if (unlikely(idigit < 0)) goto done;
jpayne@68 29210 remaining_bits = ((int) sizeof(long) * 8) - bits - (is_unsigned ? 0 : 1);
jpayne@68 29211 if (unlikely(idigit >= (1L << remaining_bits)))
jpayne@68 29212 goto raise_overflow;
jpayne@68 29213 val |= ((long) idigit) << bits;
jpayne@68 29214 }
jpayne@68 29215 if (!is_unsigned) {
jpayne@68 29216 if (unlikely(val & (((long) 1) << (sizeof(long) * 8 - 1))))
jpayne@68 29217 goto raise_overflow;
jpayne@68 29218 if (is_negative)
jpayne@68 29219 val = ~val;
jpayne@68 29220 }
jpayne@68 29221 ret = 0;
jpayne@68 29222 done:
jpayne@68 29223 Py_XDECREF(shift);
jpayne@68 29224 Py_XDECREF(mask);
jpayne@68 29225 Py_XDECREF(stepval);
jpayne@68 29226 #endif
jpayne@68 29227 if (unlikely(ret))
jpayne@68 29228 return (long) -1;
jpayne@68 29229 return val;
jpayne@68 29230 }
jpayne@68 29231 raise_overflow:
jpayne@68 29232 PyErr_SetString(PyExc_OverflowError,
jpayne@68 29233 "value too large to convert to long");
jpayne@68 29234 return (long) -1;
jpayne@68 29235 raise_neg_overflow:
jpayne@68 29236 PyErr_SetString(PyExc_OverflowError,
jpayne@68 29237 "can't convert negative value to long");
jpayne@68 29238 return (long) -1;
jpayne@68 29239 }
jpayne@68 29240
jpayne@68 29241 /* FastTypeChecks */
jpayne@68 29242 #if CYTHON_COMPILING_IN_CPYTHON
jpayne@68 29243 static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) {
jpayne@68 29244 while (a) {
jpayne@68 29245 a = __Pyx_PyType_GetSlot(a, tp_base, PyTypeObject*);
jpayne@68 29246 if (a == b)
jpayne@68 29247 return 1;
jpayne@68 29248 }
jpayne@68 29249 return b == &PyBaseObject_Type;
jpayne@68 29250 }
jpayne@68 29251 static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) {
jpayne@68 29252 PyObject *mro;
jpayne@68 29253 if (a == b) return 1;
jpayne@68 29254 mro = a->tp_mro;
jpayne@68 29255 if (likely(mro)) {
jpayne@68 29256 Py_ssize_t i, n;
jpayne@68 29257 n = PyTuple_GET_SIZE(mro);
jpayne@68 29258 for (i = 0; i < n; i++) {
jpayne@68 29259 if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b)
jpayne@68 29260 return 1;
jpayne@68 29261 }
jpayne@68 29262 return 0;
jpayne@68 29263 }
jpayne@68 29264 return __Pyx_InBases(a, b);
jpayne@68 29265 }
jpayne@68 29266 static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b) {
jpayne@68 29267 PyObject *mro;
jpayne@68 29268 if (cls == a || cls == b) return 1;
jpayne@68 29269 mro = cls->tp_mro;
jpayne@68 29270 if (likely(mro)) {
jpayne@68 29271 Py_ssize_t i, n;
jpayne@68 29272 n = PyTuple_GET_SIZE(mro);
jpayne@68 29273 for (i = 0; i < n; i++) {
jpayne@68 29274 PyObject *base = PyTuple_GET_ITEM(mro, i);
jpayne@68 29275 if (base == (PyObject *)a || base == (PyObject *)b)
jpayne@68 29276 return 1;
jpayne@68 29277 }
jpayne@68 29278 return 0;
jpayne@68 29279 }
jpayne@68 29280 return __Pyx_InBases(cls, a) || __Pyx_InBases(cls, b);
jpayne@68 29281 }
jpayne@68 29282 #if PY_MAJOR_VERSION == 2
jpayne@68 29283 static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) {
jpayne@68 29284 PyObject *exception, *value, *tb;
jpayne@68 29285 int res;
jpayne@68 29286 __Pyx_PyThreadState_declare
jpayne@68 29287 __Pyx_PyThreadState_assign
jpayne@68 29288 __Pyx_ErrFetch(&exception, &value, &tb);
jpayne@68 29289 res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0;
jpayne@68 29290 if (unlikely(res == -1)) {
jpayne@68 29291 PyErr_WriteUnraisable(err);
jpayne@68 29292 res = 0;
jpayne@68 29293 }
jpayne@68 29294 if (!res) {
jpayne@68 29295 res = PyObject_IsSubclass(err, exc_type2);
jpayne@68 29296 if (unlikely(res == -1)) {
jpayne@68 29297 PyErr_WriteUnraisable(err);
jpayne@68 29298 res = 0;
jpayne@68 29299 }
jpayne@68 29300 }
jpayne@68 29301 __Pyx_ErrRestore(exception, value, tb);
jpayne@68 29302 return res;
jpayne@68 29303 }
jpayne@68 29304 #else
jpayne@68 29305 static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) {
jpayne@68 29306 if (exc_type1) {
jpayne@68 29307 return __Pyx_IsAnySubtype2((PyTypeObject*)err, (PyTypeObject*)exc_type1, (PyTypeObject*)exc_type2);
jpayne@68 29308 } else {
jpayne@68 29309 return __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2);
jpayne@68 29310 }
jpayne@68 29311 }
jpayne@68 29312 #endif
jpayne@68 29313 static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
jpayne@68 29314 Py_ssize_t i, n;
jpayne@68 29315 assert(PyExceptionClass_Check(exc_type));
jpayne@68 29316 n = PyTuple_GET_SIZE(tuple);
jpayne@68 29317 #if PY_MAJOR_VERSION >= 3
jpayne@68 29318 for (i=0; i<n; i++) {
jpayne@68 29319 if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
jpayne@68 29320 }
jpayne@68 29321 #endif
jpayne@68 29322 for (i=0; i<n; i++) {
jpayne@68 29323 PyObject *t = PyTuple_GET_ITEM(tuple, i);
jpayne@68 29324 #if PY_MAJOR_VERSION < 3
jpayne@68 29325 if (likely(exc_type == t)) return 1;
jpayne@68 29326 #endif
jpayne@68 29327 if (likely(PyExceptionClass_Check(t))) {
jpayne@68 29328 if (__Pyx_inner_PyErr_GivenExceptionMatches2(exc_type, NULL, t)) return 1;
jpayne@68 29329 } else {
jpayne@68 29330 }
jpayne@68 29331 }
jpayne@68 29332 return 0;
jpayne@68 29333 }
jpayne@68 29334 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject* exc_type) {
jpayne@68 29335 if (likely(err == exc_type)) return 1;
jpayne@68 29336 if (likely(PyExceptionClass_Check(err))) {
jpayne@68 29337 if (likely(PyExceptionClass_Check(exc_type))) {
jpayne@68 29338 return __Pyx_inner_PyErr_GivenExceptionMatches2(err, NULL, exc_type);
jpayne@68 29339 } else if (likely(PyTuple_Check(exc_type))) {
jpayne@68 29340 return __Pyx_PyErr_GivenExceptionMatchesTuple(err, exc_type);
jpayne@68 29341 } else {
jpayne@68 29342 }
jpayne@68 29343 }
jpayne@68 29344 return PyErr_GivenExceptionMatches(err, exc_type);
jpayne@68 29345 }
jpayne@68 29346 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *exc_type1, PyObject *exc_type2) {
jpayne@68 29347 assert(PyExceptionClass_Check(exc_type1));
jpayne@68 29348 assert(PyExceptionClass_Check(exc_type2));
jpayne@68 29349 if (likely(err == exc_type1 || err == exc_type2)) return 1;
jpayne@68 29350 if (likely(PyExceptionClass_Check(err))) {
jpayne@68 29351 return __Pyx_inner_PyErr_GivenExceptionMatches2(err, exc_type1, exc_type2);
jpayne@68 29352 }
jpayne@68 29353 return (PyErr_GivenExceptionMatches(err, exc_type1) || PyErr_GivenExceptionMatches(err, exc_type2));
jpayne@68 29354 }
jpayne@68 29355 #endif
jpayne@68 29356
jpayne@68 29357 /* CheckBinaryVersion */
jpayne@68 29358 static unsigned long __Pyx_get_runtime_version(void) {
jpayne@68 29359 #if __PYX_LIMITED_VERSION_HEX >= 0x030B00A4
jpayne@68 29360 return Py_Version & ~0xFFUL;
jpayne@68 29361 #else
jpayne@68 29362 const char* rt_version = Py_GetVersion();
jpayne@68 29363 unsigned long version = 0;
jpayne@68 29364 unsigned long factor = 0x01000000UL;
jpayne@68 29365 unsigned int digit = 0;
jpayne@68 29366 int i = 0;
jpayne@68 29367 while (factor) {
jpayne@68 29368 while ('0' <= rt_version[i] && rt_version[i] <= '9') {
jpayne@68 29369 digit = digit * 10 + (unsigned int) (rt_version[i] - '0');
jpayne@68 29370 ++i;
jpayne@68 29371 }
jpayne@68 29372 version += factor * digit;
jpayne@68 29373 if (rt_version[i] != '.')
jpayne@68 29374 break;
jpayne@68 29375 digit = 0;
jpayne@68 29376 factor >>= 8;
jpayne@68 29377 ++i;
jpayne@68 29378 }
jpayne@68 29379 return version;
jpayne@68 29380 #endif
jpayne@68 29381 }
jpayne@68 29382 static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer) {
jpayne@68 29383 const unsigned long MAJOR_MINOR = 0xFFFF0000UL;
jpayne@68 29384 if ((rt_version & MAJOR_MINOR) == (ct_version & MAJOR_MINOR))
jpayne@68 29385 return 0;
jpayne@68 29386 if (likely(allow_newer && (rt_version & MAJOR_MINOR) > (ct_version & MAJOR_MINOR)))
jpayne@68 29387 return 1;
jpayne@68 29388 {
jpayne@68 29389 char message[200];
jpayne@68 29390 PyOS_snprintf(message, sizeof(message),
jpayne@68 29391 "compile time Python version %d.%d "
jpayne@68 29392 "of module '%.100s' "
jpayne@68 29393 "%s "
jpayne@68 29394 "runtime version %d.%d",
jpayne@68 29395 (int) (ct_version >> 24), (int) ((ct_version >> 16) & 0xFF),
jpayne@68 29396 __Pyx_MODULE_NAME,
jpayne@68 29397 (allow_newer) ? "was newer than" : "does not match",
jpayne@68 29398 (int) (rt_version >> 24), (int) ((rt_version >> 16) & 0xFF)
jpayne@68 29399 );
jpayne@68 29400 return PyErr_WarnEx(NULL, message, 1);
jpayne@68 29401 }
jpayne@68 29402 }
jpayne@68 29403
jpayne@68 29404 /* FunctionImport */
jpayne@68 29405 #ifndef __PYX_HAVE_RT_ImportFunction_3_0_11
jpayne@68 29406 #define __PYX_HAVE_RT_ImportFunction_3_0_11
jpayne@68 29407 static int __Pyx_ImportFunction_3_0_11(PyObject *module, const char *funcname, void (**f)(void), const char *sig) {
jpayne@68 29408 PyObject *d = 0;
jpayne@68 29409 PyObject *cobj = 0;
jpayne@68 29410 union {
jpayne@68 29411 void (*fp)(void);
jpayne@68 29412 void *p;
jpayne@68 29413 } tmp;
jpayne@68 29414 d = PyObject_GetAttrString(module, (char *)"__pyx_capi__");
jpayne@68 29415 if (!d)
jpayne@68 29416 goto bad;
jpayne@68 29417 cobj = PyDict_GetItemString(d, funcname);
jpayne@68 29418 if (!cobj) {
jpayne@68 29419 PyErr_Format(PyExc_ImportError,
jpayne@68 29420 "%.200s does not export expected C function %.200s",
jpayne@68 29421 PyModule_GetName(module), funcname);
jpayne@68 29422 goto bad;
jpayne@68 29423 }
jpayne@68 29424 if (!PyCapsule_IsValid(cobj, sig)) {
jpayne@68 29425 PyErr_Format(PyExc_TypeError,
jpayne@68 29426 "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)",
jpayne@68 29427 PyModule_GetName(module), funcname, sig, PyCapsule_GetName(cobj));
jpayne@68 29428 goto bad;
jpayne@68 29429 }
jpayne@68 29430 tmp.p = PyCapsule_GetPointer(cobj, sig);
jpayne@68 29431 *f = tmp.fp;
jpayne@68 29432 if (!(*f))
jpayne@68 29433 goto bad;
jpayne@68 29434 Py_DECREF(d);
jpayne@68 29435 return 0;
jpayne@68 29436 bad:
jpayne@68 29437 Py_XDECREF(d);
jpayne@68 29438 return -1;
jpayne@68 29439 }
jpayne@68 29440 #endif
jpayne@68 29441
jpayne@68 29442 /* InitStrings */
jpayne@68 29443 #if PY_MAJOR_VERSION >= 3
jpayne@68 29444 static int __Pyx_InitString(__Pyx_StringTabEntry t, PyObject **str) {
jpayne@68 29445 if (t.is_unicode | t.is_str) {
jpayne@68 29446 if (t.intern) {
jpayne@68 29447 *str = PyUnicode_InternFromString(t.s);
jpayne@68 29448 } else if (t.encoding) {
jpayne@68 29449 *str = PyUnicode_Decode(t.s, t.n - 1, t.encoding, NULL);
jpayne@68 29450 } else {
jpayne@68 29451 *str = PyUnicode_FromStringAndSize(t.s, t.n - 1);
jpayne@68 29452 }
jpayne@68 29453 } else {
jpayne@68 29454 *str = PyBytes_FromStringAndSize(t.s, t.n - 1);
jpayne@68 29455 }
jpayne@68 29456 if (!*str)
jpayne@68 29457 return -1;
jpayne@68 29458 if (PyObject_Hash(*str) == -1)
jpayne@68 29459 return -1;
jpayne@68 29460 return 0;
jpayne@68 29461 }
jpayne@68 29462 #endif
jpayne@68 29463 static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
jpayne@68 29464 while (t->p) {
jpayne@68 29465 #if PY_MAJOR_VERSION >= 3
jpayne@68 29466 __Pyx_InitString(*t, t->p);
jpayne@68 29467 #else
jpayne@68 29468 if (t->is_unicode) {
jpayne@68 29469 *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
jpayne@68 29470 } else if (t->intern) {
jpayne@68 29471 *t->p = PyString_InternFromString(t->s);
jpayne@68 29472 } else {
jpayne@68 29473 *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
jpayne@68 29474 }
jpayne@68 29475 if (!*t->p)
jpayne@68 29476 return -1;
jpayne@68 29477 if (PyObject_Hash(*t->p) == -1)
jpayne@68 29478 return -1;
jpayne@68 29479 #endif
jpayne@68 29480 ++t;
jpayne@68 29481 }
jpayne@68 29482 return 0;
jpayne@68 29483 }
jpayne@68 29484
jpayne@68 29485 #include <string.h>
jpayne@68 29486 static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s) {
jpayne@68 29487 size_t len = strlen(s);
jpayne@68 29488 if (unlikely(len > (size_t) PY_SSIZE_T_MAX)) {
jpayne@68 29489 PyErr_SetString(PyExc_OverflowError, "byte string is too long");
jpayne@68 29490 return -1;
jpayne@68 29491 }
jpayne@68 29492 return (Py_ssize_t) len;
jpayne@68 29493 }
jpayne@68 29494 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
jpayne@68 29495 Py_ssize_t len = __Pyx_ssize_strlen(c_str);
jpayne@68 29496 if (unlikely(len < 0)) return NULL;
jpayne@68 29497 return __Pyx_PyUnicode_FromStringAndSize(c_str, len);
jpayne@68 29498 }
jpayne@68 29499 static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char* c_str) {
jpayne@68 29500 Py_ssize_t len = __Pyx_ssize_strlen(c_str);
jpayne@68 29501 if (unlikely(len < 0)) return NULL;
jpayne@68 29502 return PyByteArray_FromStringAndSize(c_str, len);
jpayne@68 29503 }
jpayne@68 29504 static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) {
jpayne@68 29505 Py_ssize_t ignore;
jpayne@68 29506 return __Pyx_PyObject_AsStringAndSize(o, &ignore);
jpayne@68 29507 }
jpayne@68 29508 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
jpayne@68 29509 #if !CYTHON_PEP393_ENABLED
jpayne@68 29510 static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
jpayne@68 29511 char* defenc_c;
jpayne@68 29512 PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
jpayne@68 29513 if (!defenc) return NULL;
jpayne@68 29514 defenc_c = PyBytes_AS_STRING(defenc);
jpayne@68 29515 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
jpayne@68 29516 {
jpayne@68 29517 char* end = defenc_c + PyBytes_GET_SIZE(defenc);
jpayne@68 29518 char* c;
jpayne@68 29519 for (c = defenc_c; c < end; c++) {
jpayne@68 29520 if ((unsigned char) (*c) >= 128) {
jpayne@68 29521 PyUnicode_AsASCIIString(o);
jpayne@68 29522 return NULL;
jpayne@68 29523 }
jpayne@68 29524 }
jpayne@68 29525 }
jpayne@68 29526 #endif
jpayne@68 29527 *length = PyBytes_GET_SIZE(defenc);
jpayne@68 29528 return defenc_c;
jpayne@68 29529 }
jpayne@68 29530 #else
jpayne@68 29531 static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
jpayne@68 29532 if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL;
jpayne@68 29533 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
jpayne@68 29534 if (likely(PyUnicode_IS_ASCII(o))) {
jpayne@68 29535 *length = PyUnicode_GET_LENGTH(o);
jpayne@68 29536 return PyUnicode_AsUTF8(o);
jpayne@68 29537 } else {
jpayne@68 29538 PyUnicode_AsASCIIString(o);
jpayne@68 29539 return NULL;
jpayne@68 29540 }
jpayne@68 29541 #else
jpayne@68 29542 return PyUnicode_AsUTF8AndSize(o, length);
jpayne@68 29543 #endif
jpayne@68 29544 }
jpayne@68 29545 #endif
jpayne@68 29546 #endif
jpayne@68 29547 static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
jpayne@68 29548 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
jpayne@68 29549 if (
jpayne@68 29550 #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
jpayne@68 29551 __Pyx_sys_getdefaultencoding_not_ascii &&
jpayne@68 29552 #endif
jpayne@68 29553 PyUnicode_Check(o)) {
jpayne@68 29554 return __Pyx_PyUnicode_AsStringAndSize(o, length);
jpayne@68 29555 } else
jpayne@68 29556 #endif
jpayne@68 29557 #if (!CYTHON_COMPILING_IN_PYPY && !CYTHON_COMPILING_IN_LIMITED_API) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))
jpayne@68 29558 if (PyByteArray_Check(o)) {
jpayne@68 29559 *length = PyByteArray_GET_SIZE(o);
jpayne@68 29560 return PyByteArray_AS_STRING(o);
jpayne@68 29561 } else
jpayne@68 29562 #endif
jpayne@68 29563 {
jpayne@68 29564 char* result;
jpayne@68 29565 int r = PyBytes_AsStringAndSize(o, &result, length);
jpayne@68 29566 if (unlikely(r < 0)) {
jpayne@68 29567 return NULL;
jpayne@68 29568 } else {
jpayne@68 29569 return result;
jpayne@68 29570 }
jpayne@68 29571 }
jpayne@68 29572 }
jpayne@68 29573 static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
jpayne@68 29574 int is_true = x == Py_True;
jpayne@68 29575 if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
jpayne@68 29576 else return PyObject_IsTrue(x);
jpayne@68 29577 }
jpayne@68 29578 static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) {
jpayne@68 29579 int retval;
jpayne@68 29580 if (unlikely(!x)) return -1;
jpayne@68 29581 retval = __Pyx_PyObject_IsTrue(x);
jpayne@68 29582 Py_DECREF(x);
jpayne@68 29583 return retval;
jpayne@68 29584 }
jpayne@68 29585 static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) {
jpayne@68 29586 __Pyx_TypeName result_type_name = __Pyx_PyType_GetName(Py_TYPE(result));
jpayne@68 29587 #if PY_MAJOR_VERSION >= 3
jpayne@68 29588 if (PyLong_Check(result)) {
jpayne@68 29589 if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1,
jpayne@68 29590 "__int__ returned non-int (type " __Pyx_FMT_TYPENAME "). "
jpayne@68 29591 "The ability to return an instance of a strict subclass of int is deprecated, "
jpayne@68 29592 "and may be removed in a future version of Python.",
jpayne@68 29593 result_type_name)) {
jpayne@68 29594 __Pyx_DECREF_TypeName(result_type_name);
jpayne@68 29595 Py_DECREF(result);
jpayne@68 29596 return NULL;
jpayne@68 29597 }
jpayne@68 29598 __Pyx_DECREF_TypeName(result_type_name);
jpayne@68 29599 return result;
jpayne@68 29600 }
jpayne@68 29601 #endif
jpayne@68 29602 PyErr_Format(PyExc_TypeError,
jpayne@68 29603 "__%.4s__ returned non-%.4s (type " __Pyx_FMT_TYPENAME ")",
jpayne@68 29604 type_name, type_name, result_type_name);
jpayne@68 29605 __Pyx_DECREF_TypeName(result_type_name);
jpayne@68 29606 Py_DECREF(result);
jpayne@68 29607 return NULL;
jpayne@68 29608 }
jpayne@68 29609 static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) {
jpayne@68 29610 #if CYTHON_USE_TYPE_SLOTS
jpayne@68 29611 PyNumberMethods *m;
jpayne@68 29612 #endif
jpayne@68 29613 const char *name = NULL;
jpayne@68 29614 PyObject *res = NULL;
jpayne@68 29615 #if PY_MAJOR_VERSION < 3
jpayne@68 29616 if (likely(PyInt_Check(x) || PyLong_Check(x)))
jpayne@68 29617 #else
jpayne@68 29618 if (likely(PyLong_Check(x)))
jpayne@68 29619 #endif
jpayne@68 29620 return __Pyx_NewRef(x);
jpayne@68 29621 #if CYTHON_USE_TYPE_SLOTS
jpayne@68 29622 m = Py_TYPE(x)->tp_as_number;
jpayne@68 29623 #if PY_MAJOR_VERSION < 3
jpayne@68 29624 if (m && m->nb_int) {
jpayne@68 29625 name = "int";
jpayne@68 29626 res = m->nb_int(x);
jpayne@68 29627 }
jpayne@68 29628 else if (m && m->nb_long) {
jpayne@68 29629 name = "long";
jpayne@68 29630 res = m->nb_long(x);
jpayne@68 29631 }
jpayne@68 29632 #else
jpayne@68 29633 if (likely(m && m->nb_int)) {
jpayne@68 29634 name = "int";
jpayne@68 29635 res = m->nb_int(x);
jpayne@68 29636 }
jpayne@68 29637 #endif
jpayne@68 29638 #else
jpayne@68 29639 if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) {
jpayne@68 29640 res = PyNumber_Int(x);
jpayne@68 29641 }
jpayne@68 29642 #endif
jpayne@68 29643 if (likely(res)) {
jpayne@68 29644 #if PY_MAJOR_VERSION < 3
jpayne@68 29645 if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) {
jpayne@68 29646 #else
jpayne@68 29647 if (unlikely(!PyLong_CheckExact(res))) {
jpayne@68 29648 #endif
jpayne@68 29649 return __Pyx_PyNumber_IntOrLongWrongResultType(res, name);
jpayne@68 29650 }
jpayne@68 29651 }
jpayne@68 29652 else if (!PyErr_Occurred()) {
jpayne@68 29653 PyErr_SetString(PyExc_TypeError,
jpayne@68 29654 "an integer is required");
jpayne@68 29655 }
jpayne@68 29656 return res;
jpayne@68 29657 }
jpayne@68 29658 static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
jpayne@68 29659 Py_ssize_t ival;
jpayne@68 29660 PyObject *x;
jpayne@68 29661 #if PY_MAJOR_VERSION < 3
jpayne@68 29662 if (likely(PyInt_CheckExact(b))) {
jpayne@68 29663 if (sizeof(Py_ssize_t) >= sizeof(long))
jpayne@68 29664 return PyInt_AS_LONG(b);
jpayne@68 29665 else
jpayne@68 29666 return PyInt_AsSsize_t(b);
jpayne@68 29667 }
jpayne@68 29668 #endif
jpayne@68 29669 if (likely(PyLong_CheckExact(b))) {
jpayne@68 29670 #if CYTHON_USE_PYLONG_INTERNALS
jpayne@68 29671 if (likely(__Pyx_PyLong_IsCompact(b))) {
jpayne@68 29672 return __Pyx_PyLong_CompactValue(b);
jpayne@68 29673 } else {
jpayne@68 29674 const digit* digits = __Pyx_PyLong_Digits(b);
jpayne@68 29675 const Py_ssize_t size = __Pyx_PyLong_SignedDigitCount(b);
jpayne@68 29676 switch (size) {
jpayne@68 29677 case 2:
jpayne@68 29678 if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
jpayne@68 29679 return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
jpayne@68 29680 }
jpayne@68 29681 break;
jpayne@68 29682 case -2:
jpayne@68 29683 if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
jpayne@68 29684 return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
jpayne@68 29685 }
jpayne@68 29686 break;
jpayne@68 29687 case 3:
jpayne@68 29688 if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
jpayne@68 29689 return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
jpayne@68 29690 }
jpayne@68 29691 break;
jpayne@68 29692 case -3:
jpayne@68 29693 if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
jpayne@68 29694 return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
jpayne@68 29695 }
jpayne@68 29696 break;
jpayne@68 29697 case 4:
jpayne@68 29698 if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
jpayne@68 29699 return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
jpayne@68 29700 }
jpayne@68 29701 break;
jpayne@68 29702 case -4:
jpayne@68 29703 if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
jpayne@68 29704 return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
jpayne@68 29705 }
jpayne@68 29706 break;
jpayne@68 29707 }
jpayne@68 29708 }
jpayne@68 29709 #endif
jpayne@68 29710 return PyLong_AsSsize_t(b);
jpayne@68 29711 }
jpayne@68 29712 x = PyNumber_Index(b);
jpayne@68 29713 if (!x) return -1;
jpayne@68 29714 ival = PyInt_AsSsize_t(x);
jpayne@68 29715 Py_DECREF(x);
jpayne@68 29716 return ival;
jpayne@68 29717 }
jpayne@68 29718 static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject* o) {
jpayne@68 29719 if (sizeof(Py_hash_t) == sizeof(Py_ssize_t)) {
jpayne@68 29720 return (Py_hash_t) __Pyx_PyIndex_AsSsize_t(o);
jpayne@68 29721 #if PY_MAJOR_VERSION < 3
jpayne@68 29722 } else if (likely(PyInt_CheckExact(o))) {
jpayne@68 29723 return PyInt_AS_LONG(o);
jpayne@68 29724 #endif
jpayne@68 29725 } else {
jpayne@68 29726 Py_ssize_t ival;
jpayne@68 29727 PyObject *x;
jpayne@68 29728 x = PyNumber_Index(o);
jpayne@68 29729 if (!x) return -1;
jpayne@68 29730 ival = PyInt_AsLong(x);
jpayne@68 29731 Py_DECREF(x);
jpayne@68 29732 return ival;
jpayne@68 29733 }
jpayne@68 29734 }
jpayne@68 29735 static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) {
jpayne@68 29736 return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False);
jpayne@68 29737 }
jpayne@68 29738 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
jpayne@68 29739 return PyInt_FromSize_t(ival);
jpayne@68 29740 }
jpayne@68 29741
jpayne@68 29742
jpayne@68 29743 /* #### Code section: utility_code_pragmas_end ### */
jpayne@68 29744 #ifdef _MSC_VER
jpayne@68 29745 #pragma warning( pop )
jpayne@68 29746 #endif
jpayne@68 29747
jpayne@68 29748
jpayne@68 29749
jpayne@68 29750 /* #### Code section: end ### */
jpayne@68 29751 #endif /* Py_PYTHON_H */