Mercurial > repos > rliterman > csp2
annotate CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/bbmap-39.01-1/config/recalibrate.txt @ 68:5028fdace37b
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 16:23:26 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| jpayne@68 | 1 #Quality recalibration parameters for CalcTrueQuality and BBDuk |
| jpayne@68 | 2 recalpasses=2 |
| jpayne@68 | 3 observationcutoff_p1=100 |
| jpayne@68 | 4 observationcutoff_p2=200 |
| jpayne@68 | 5 recalqmax=41 |
| jpayne@68 | 6 recalqmin=2 |
| jpayne@68 | 7 |
| jpayne@68 | 8 #first pass matrices |
| jpayne@68 | 9 loadq102_p1=f |
| jpayne@68 | 10 loadqbp_p1=t |
| jpayne@68 | 11 loadq10_p1=f |
| jpayne@68 | 12 loadq12_p1=f |
| jpayne@68 | 13 loadqb12_p1=f |
| jpayne@68 | 14 loadqb012_p1=f |
| jpayne@68 | 15 loadqb123_p1=t |
| jpayne@68 | 16 loadqb234_p1=f |
| jpayne@68 | 17 loadq12b12_p1=f |
| jpayne@68 | 18 loadqp_p1=f |
| jpayne@68 | 19 loadq_p1=f |
| jpayne@68 | 20 |
| jpayne@68 | 21 #second pass matrices |
| jpayne@68 | 22 loadq102_p2=f |
| jpayne@68 | 23 loadqbp_p2=t |
| jpayne@68 | 24 loadq10_p2=f |
| jpayne@68 | 25 loadq12_p2=f |
| jpayne@68 | 26 loadqb12_p2=f |
| jpayne@68 | 27 loadqb012_p2=f |
| jpayne@68 | 28 loadqb123_p2=f |
| jpayne@68 | 29 loadqb234_p2=f |
| jpayne@68 | 30 loadq12b12_p2=f |
| jpayne@68 | 31 loadqp_p2=f |
| jpayne@68 | 32 loadq_p2=f |