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1 package icecream;
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2
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3 import shared.Parse;
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4
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5 public class PBHeader {
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6
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7 public PBHeader(String s){
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8 setFrom(s);
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9 }
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10
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11 //m64021_190821_100154/102/32038_35649
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12 //m64021_190821_100154 is run id
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13 //102 is zmw id
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14 //32038_35649 are movie coordinates
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15 //This function allows extra stuff like whitespace after the end of the formal header.
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16 public void setFrom(final String header){
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17 original=header;
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18 int slash1=header.indexOf('/');
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19 assert(slash1>=0) : "Misformatted PBHeader: "+header;
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20 int slash2=header.indexOf('/', slash1+1);
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21 assert(slash2>=0) : "Misformatted PBHeader: "+header;
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22 int under3=header.indexOf('_', slash2+1);
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23 assert(under3>=0) : "Misformatted PBHeader: "+header;
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24 int terminator=under3+1;
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25 while(terminator<header.length() && Character.isDigit(header.charAt(terminator))){terminator++;}
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26 runID=header.substring(0, slash1);
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27 // System.err.println("\n"+header+"\n"+slash1+","+slash2);
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28 zmwID=Parse.parseInt(header, slash1+1, slash2);
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29 start=Parse.parseInt(header, slash2+1, under3);
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30 stop=Parse.parseInt(header, under3+1, terminator);
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31 }
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32
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33 public static int parseZMW(final String header){
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34 int slash1=header.indexOf('/');
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35 assert(slash1>=0) : "Misformatted PBHeader: "+header;
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36 int slash2=header.indexOf('/', slash1+1);
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37 assert(slash2>=0) : "Misformatted PBHeader: "+header;
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38 int zmwID=Parse.parseInt(header, slash1+1, slash2);
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39 return zmwID;
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40 }
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41
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42 public String original;
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43 public String runID;
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44 public int zmwID;
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45 public int start;
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46 public int stop;
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47
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48 }
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