Mercurial > repos > rliterman > csp2
comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pysam/libctabixproxies.pyi @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 17:55:14 -0400 |
| parents | |
| children |
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| 67:0e9998148a16 | 69:33d812a61356 |
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| 1 from typing import ( | |
| 2 Optional, | |
| 3 overload, | |
| 4 List, | |
| 5 Dict, | |
| 6 OrderedDict, | |
| 7 Tuple, | |
| 8 Iterable, | |
| 9 KeysView, | |
| 10 Any, | |
| 11 ) | |
| 12 | |
| 13 class TupleProxyIterator: | |
| 14 def __init__(self, proxy: Any): ... | |
| 15 def __iter__(self) -> TupleProxyIterator: ... | |
| 16 def __next__(self) -> Optional[str]: ... | |
| 17 | |
| 18 class TupleProxy: | |
| 19 def __init__(self, encoding: str = ...) -> None: ... | |
| 20 def __copy__(self) -> TupleProxy: ... | |
| 21 def compare(self, other: TupleProxy) -> int: ... | |
| 22 def getMinFields(self) -> int: ... | |
| 23 def getMaxFields(self) -> int: ... | |
| 24 def _getindex(self, index: int) -> str: ... | |
| 25 @overload | |
| 26 def __getitem__(self, key: slice) -> List[str]: ... | |
| 27 @overload | |
| 28 def __getitem__(self, key: int) -> Any: ... | |
| 29 def _setindex(self, index: int, value: Optional[str]) -> None: ... | |
| 30 def __setitem__(self, index: int, value: Optional[str]) -> None: ... | |
| 31 def __len__(self) -> int: ... | |
| 32 def __iter__(self) -> TupleProxyIterator: ... | |
| 33 | |
| 34 class NamedTupleProxy(TupleProxy): | |
| 35 def __setattr__(self, key: str, value: str) -> None: ... | |
| 36 def __getattr__(self, key: str) -> str: ... | |
| 37 | |
| 38 class GTFProxy(NamedTupleProxy): | |
| 39 def to_dict(self) -> Dict[str, Any]: ... | |
| 40 def from_dict(self, d: Dict[str, Any]) -> None: ... | |
| 41 def invert(self, lcontig: int) -> None: ... | |
| 42 def keys(self) -> KeysView[str]: ... | |
| 43 def setAttribute(self, key: str, value: Any) -> None: ... | |
| 44 def attribute_string2dict(self, s: str) -> OrderedDict[str, Any]: ... | |
| 45 def dict2attribute_string(self, d: Dict[str, Any]) -> str: ... | |
| 46 def attribute_string2iterator(self, s: str) -> Iterable[Tuple[str, Any]]: ... | |
| 47 def __getattr__(self, key: str) -> Any: ... | |
| 48 def __setattr__(self, key: str, value: Any) -> None: ... | |
| 49 # deprecated: | |
| 50 # def asDict(self) -> Any: ... | |
| 51 # def as_dict(self) -> Any: ... | |
| 52 # def fromDict(self, *args, **kwargs) -> Any: ... | |
| 53 | |
| 54 class GFF3Proxy(GTFProxy): ... | |
| 55 | |
| 56 class BedProxy(NamedTupleProxy): | |
| 57 def __setattr__(self, key: str, value: Any) -> None: ... | |
| 58 | |
| 59 class VCFProxy(NamedTupleProxy): | |
| 60 @property | |
| 61 def pos(self) -> int: ... | |
| 62 def __setattr__(self, key: str, value: Any) -> None: ... |