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1 from typing import (
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2 Optional,
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3 overload,
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4 List,
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5 Dict,
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6 OrderedDict,
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7 Tuple,
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8 Iterable,
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9 KeysView,
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10 Any,
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11 )
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12
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13 class TupleProxyIterator:
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14 def __init__(self, proxy: Any): ...
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15 def __iter__(self) -> TupleProxyIterator: ...
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16 def __next__(self) -> Optional[str]: ...
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17
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18 class TupleProxy:
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19 def __init__(self, encoding: str = ...) -> None: ...
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20 def __copy__(self) -> TupleProxy: ...
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21 def compare(self, other: TupleProxy) -> int: ...
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22 def getMinFields(self) -> int: ...
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23 def getMaxFields(self) -> int: ...
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24 def _getindex(self, index: int) -> str: ...
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25 @overload
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26 def __getitem__(self, key: slice) -> List[str]: ...
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27 @overload
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28 def __getitem__(self, key: int) -> Any: ...
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29 def _setindex(self, index: int, value: Optional[str]) -> None: ...
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30 def __setitem__(self, index: int, value: Optional[str]) -> None: ...
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31 def __len__(self) -> int: ...
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32 def __iter__(self) -> TupleProxyIterator: ...
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33
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34 class NamedTupleProxy(TupleProxy):
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35 def __setattr__(self, key: str, value: str) -> None: ...
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36 def __getattr__(self, key: str) -> str: ...
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37
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38 class GTFProxy(NamedTupleProxy):
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39 def to_dict(self) -> Dict[str, Any]: ...
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40 def from_dict(self, d: Dict[str, Any]) -> None: ...
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41 def invert(self, lcontig: int) -> None: ...
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42 def keys(self) -> KeysView[str]: ...
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43 def setAttribute(self, key: str, value: Any) -> None: ...
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44 def attribute_string2dict(self, s: str) -> OrderedDict[str, Any]: ...
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45 def dict2attribute_string(self, d: Dict[str, Any]) -> str: ...
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46 def attribute_string2iterator(self, s: str) -> Iterable[Tuple[str, Any]]: ...
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47 def __getattr__(self, key: str) -> Any: ...
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48 def __setattr__(self, key: str, value: Any) -> None: ...
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49 # deprecated:
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50 # def asDict(self) -> Any: ...
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51 # def as_dict(self) -> Any: ...
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52 # def fromDict(self, *args, **kwargs) -> Any: ...
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53
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54 class GFF3Proxy(GTFProxy): ...
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55
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56 class BedProxy(NamedTupleProxy):
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57 def __setattr__(self, key: str, value: Any) -> None: ...
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58
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59 class VCFProxy(NamedTupleProxy):
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60 @property
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61 def pos(self) -> int: ...
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62 def __setattr__(self, key: str, value: Any) -> None: ...
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