--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pysam/libctabixproxies.pyi	Tue Mar 18 17:55:14 2025 -0400
@@ -0,0 +1,62 @@
+from typing import (
+    Optional,
+    overload,
+    List,
+    Dict,
+    OrderedDict,
+    Tuple,
+    Iterable,
+    KeysView,
+    Any,
+)
+
+class TupleProxyIterator:
+    def __init__(self, proxy: Any): ...
+    def __iter__(self) -> TupleProxyIterator: ...
+    def __next__(self) -> Optional[str]: ...
+
+class TupleProxy:
+    def __init__(self, encoding: str = ...) -> None: ...
+    def __copy__(self) -> TupleProxy: ...
+    def compare(self, other: TupleProxy) -> int: ...
+    def getMinFields(self) -> int: ...
+    def getMaxFields(self) -> int: ...
+    def _getindex(self, index: int) -> str: ...
+    @overload
+    def __getitem__(self, key: slice) -> List[str]: ...
+    @overload
+    def __getitem__(self, key: int) -> Any: ...
+    def _setindex(self, index: int, value: Optional[str]) -> None: ...
+    def __setitem__(self, index: int, value: Optional[str]) -> None: ...
+    def __len__(self) -> int: ...
+    def __iter__(self) -> TupleProxyIterator: ...
+
+class NamedTupleProxy(TupleProxy):
+    def __setattr__(self, key: str, value: str) -> None: ...
+    def __getattr__(self, key: str) -> str: ...
+
+class GTFProxy(NamedTupleProxy):
+    def to_dict(self) -> Dict[str, Any]: ...
+    def from_dict(self, d: Dict[str, Any]) -> None: ...
+    def invert(self, lcontig: int) -> None: ...
+    def keys(self) -> KeysView[str]: ...
+    def setAttribute(self, key: str, value: Any) -> None: ...
+    def attribute_string2dict(self, s: str) -> OrderedDict[str, Any]: ...
+    def dict2attribute_string(self, d: Dict[str, Any]) -> str: ...
+    def attribute_string2iterator(self, s: str) -> Iterable[Tuple[str, Any]]: ...
+    def __getattr__(self, key: str) -> Any: ...
+    def __setattr__(self, key: str, value: Any) -> None: ...
+    # deprecated:
+    # def asDict(self) -> Any: ...
+    # def as_dict(self) -> Any: ...
+    # def fromDict(self, *args, **kwargs) -> Any: ...
+
+class GFF3Proxy(GTFProxy): ...
+
+class BedProxy(NamedTupleProxy):
+    def __setattr__(self, key: str, value: Any) -> None: ...
+
+class VCFProxy(NamedTupleProxy):
+    @property
+    def pos(self) -> int: ...
+    def __setattr__(self, key: str, value: Any) -> None: ...