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comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/Makefile @ 69:33d812a61356

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planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author jpayne
date Tue, 18 Mar 2025 17:55:14 -0400
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67:0e9998148a16 69:33d812a61356
1 #-------------------------------------------------------------------------------
2 # Top level makefile for MUMmer 3.0
3 #
4 # Dependencies: '/bin/sh', 'g++', 'gcc', 'csh', 'perl', 'sed'
5 #
6 # 'make all' builds all MUMmer code and scripts in the base directory
7 #
8 # 'make check' checks for the existance of the MUMmer dependencies
9 #
10 # 'make clean' removes *.o *~ core* and executable files
11 #
12 # 'make dist' creates a gzipped tarfile of the MUMmer directories
13 #
14 # 'make install' alias for 'make all' (for compatibility)
15 #
16 # 'make kurtz' builds Stefan's mummer program in the base directory
17 #
18 # 'make scripts' builds the MUMmer scripts in the base directory
19 #
20 # 'make tigr' builds TIGR's code in the base directory
21 #
22 # 'make uninstall' alias for 'make clean' (for compatibility)
23 #
24 #-------------------------------------------------------------------------------
25 SHELL = /bin/sh
26 VERSION := 3.23
27
28
29 TOP_DIR := $(CURDIR)
30 BIN_DIR := $(TOP_DIR)
31 AUX_BIN_DIR := $(TOP_DIR)/aux_bin
32
33 DOC_DIR := $(TOP_DIR)/docs
34 SCRIPT_DIR := $(TOP_DIR)/scripts
35 TIGR_SRC_DIR := $(TOP_DIR)/src/tigr
36 KURTZ_SRC_DIR := $(TOP_DIR)/src/kurtz
37
38 CC := $(filter /%,$(shell /bin/sh -c 'type gcc'))
39 CXX := $(filter /%,$(shell /bin/sh -c 'type g++'))
40 SED := $(filter /%,$(shell /bin/sh -c 'type sed'))
41 CSH := $(filter /%,$(shell /bin/sh -c 'type csh'))
42 PERL := $(filter /%,$(shell /bin/sh -c 'type perl'))
43 AR := $(filter /%,$(shell /bin/sh -c 'type ar'))
44
45 CXXFLAGS = -O3
46 CFLAGS = -O3
47 LDFLAGS =
48
49 FLATS = ACKNOWLEDGEMENTS COPYRIGHT INSTALL LICENSE Makefile README ChangeLog
50
51
52
53 #-- EXPORT THESE VARIABLES TO OTHER MAKEFILES
54 export BIN_DIR AUX_BIN_DIR CXX CC CFLAGS CXXFLAGS LDFLAGS
55
56
57
58
59 #-- PHONY rules --#
60 .PHONY: all check clean dist scripts uninstall
61
62
63 all: kurtz tigr scripts
64
65
66 check:
67 ifndef TOP_DIR
68 @echo "ERROR: could not find working directory"
69 endif
70 ifndef CC
71 @echo "ERROR: 'gcc' GNU C compiler not found"
72 endif
73 ifndef CXX
74 @echo "ERROR: 'g++' GNU C++ compiler not found"
75 endif
76 ifndef SED
77 @echo "ERROR: 'sed' StreamEDitor not found"
78 endif
79 ifndef CSH
80 @echo "ERROR: 'csh' C-shell not found"
81 endif
82 ifndef PERL
83 @echo "ERROR: 'perl' PERL not found"
84 endif
85 ifndef AR
86 @echo "ERROR: 'ar' GNU archiver not found"
87 endif
88 @echo "check complete"
89
90
91 clean:
92 rm -f *~ core*
93 cd $(KURTZ_SRC_DIR); $(MAKE) clean
94 cd $(TIGR_SRC_DIR); $(MAKE) clean
95 cd $(SCRIPT_DIR); $(MAKE) clean
96 cd $(DOC_DIR); $(MAKE) clean
97
98
99 dist: DISTDIR = MUMmer$(VERSION)
100 dist:
101 mkdir $(DISTDIR)
102 cp -r aux_bin $(DISTDIR)
103 cp -r docs $(DISTDIR)
104 cp -r scripts $(DISTDIR)
105 cp -r src $(DISTDIR)
106 cp $(FLATS) $(DISTDIR)
107 rm -rf `find $(DISTDIR) -name CVS`
108 tar -cvf $(DISTDIR).tar $(DISTDIR)
109 gzip $(DISTDIR).tar
110 rm -rf $(DISTDIR)
111
112
113 install: all
114
115
116 kurtz:
117 cd $(KURTZ_SRC_DIR); $(MAKE) mummer
118
119
120 scripts:
121 cd $(SCRIPT_DIR); $(MAKE) all
122
123
124 tigr:
125 cd $(TIGR_SRC_DIR); $(MAKE) all
126
127
128 uninstall: clean
129
130
131 #-- END OF MAKEFILE --#