--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/Makefile	Tue Mar 18 17:55:14 2025 -0400
@@ -0,0 +1,131 @@
+#-------------------------------------------------------------------------------
+#  Top level makefile for MUMmer 3.0
+#
+#  Dependencies: '/bin/sh', 'g++', 'gcc', 'csh', 'perl', 'sed'
+#
+#  'make all' builds all MUMmer code and scripts in the base directory
+#
+#  'make check' checks for the existance of the MUMmer dependencies
+#
+#  'make clean' removes *.o *~ core* and executable files
+#
+#  'make dist' creates a gzipped tarfile of the MUMmer directories
+#
+#  'make install' alias for 'make all' (for compatibility)
+#
+#  'make kurtz' builds Stefan's mummer program in the base directory
+#
+#  'make scripts' builds the MUMmer scripts in the base directory
+#
+#  'make tigr' builds TIGR's code in the base directory
+#
+#  'make uninstall' alias for 'make clean' (for compatibility)
+#
+#-------------------------------------------------------------------------------
+SHELL = /bin/sh
+VERSION := 3.23
+
+
+TOP_DIR     := $(CURDIR)
+BIN_DIR     := $(TOP_DIR)
+AUX_BIN_DIR := $(TOP_DIR)/aux_bin
+
+DOC_DIR       := $(TOP_DIR)/docs
+SCRIPT_DIR    := $(TOP_DIR)/scripts
+TIGR_SRC_DIR  := $(TOP_DIR)/src/tigr
+KURTZ_SRC_DIR := $(TOP_DIR)/src/kurtz
+
+CC   := $(filter /%,$(shell /bin/sh -c 'type gcc'))
+CXX  := $(filter /%,$(shell /bin/sh -c 'type g++'))
+SED  := $(filter /%,$(shell /bin/sh -c 'type sed'))
+CSH  := $(filter /%,$(shell /bin/sh -c 'type csh'))
+PERL := $(filter /%,$(shell /bin/sh -c 'type perl'))
+AR   := $(filter /%,$(shell /bin/sh -c 'type ar'))
+
+CXXFLAGS = -O3
+CFLAGS = -O3
+LDFLAGS  =
+
+FLATS = ACKNOWLEDGEMENTS COPYRIGHT INSTALL LICENSE Makefile README ChangeLog
+
+
+
+#-- EXPORT THESE VARIABLES TO OTHER MAKEFILES
+export BIN_DIR AUX_BIN_DIR CXX CC CFLAGS CXXFLAGS LDFLAGS
+
+
+
+
+#-- PHONY rules --#
+.PHONY: all check clean dist scripts uninstall
+
+
+all: kurtz tigr scripts
+
+
+check:
+ifndef TOP_DIR
+	@echo "ERROR: could not find working directory"
+endif
+ifndef CC
+	@echo "ERROR: 'gcc' GNU C compiler not found"
+endif
+ifndef CXX
+	@echo "ERROR: 'g++' GNU C++ compiler not found"
+endif
+ifndef SED
+	@echo "ERROR: 'sed' StreamEDitor not found"
+endif
+ifndef CSH
+	@echo "ERROR: 'csh' C-shell not found"
+endif
+ifndef PERL
+	@echo "ERROR: 'perl' PERL not found"
+endif
+ifndef AR
+	@echo "ERROR: 'ar' GNU archiver not found"
+endif
+	@echo "check complete"
+
+
+clean:
+	rm -f *~ core*
+	cd $(KURTZ_SRC_DIR); $(MAKE) clean
+	cd $(TIGR_SRC_DIR); $(MAKE) clean
+	cd $(SCRIPT_DIR); $(MAKE) clean
+	cd $(DOC_DIR); $(MAKE) clean
+
+
+dist: DISTDIR = MUMmer$(VERSION)
+dist:
+	mkdir $(DISTDIR)
+	cp -r aux_bin $(DISTDIR)
+	cp -r docs $(DISTDIR)
+	cp -r scripts $(DISTDIR)
+	cp -r src $(DISTDIR)
+	cp $(FLATS) $(DISTDIR)
+	rm -rf `find $(DISTDIR) -name CVS`
+	tar -cvf $(DISTDIR).tar $(DISTDIR)
+	gzip $(DISTDIR).tar
+	rm -rf $(DISTDIR)
+
+
+install: all
+
+
+kurtz:
+	cd $(KURTZ_SRC_DIR); $(MAKE) mummer
+
+
+scripts:
+	cd $(SCRIPT_DIR); $(MAKE) all
+
+
+tigr:
+	cd $(TIGR_SRC_DIR); $(MAKE) all
+
+
+uninstall: clean
+
+
+#-- END OF MAKEFILE --#