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annotate CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/Makefile @ 69:33d812a61356

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planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author jpayne
date Tue, 18 Mar 2025 17:55:14 -0400
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jpayne@69 1 #-------------------------------------------------------------------------------
jpayne@69 2 # Top level makefile for MUMmer 3.0
jpayne@69 3 #
jpayne@69 4 # Dependencies: '/bin/sh', 'g++', 'gcc', 'csh', 'perl', 'sed'
jpayne@69 5 #
jpayne@69 6 # 'make all' builds all MUMmer code and scripts in the base directory
jpayne@69 7 #
jpayne@69 8 # 'make check' checks for the existance of the MUMmer dependencies
jpayne@69 9 #
jpayne@69 10 # 'make clean' removes *.o *~ core* and executable files
jpayne@69 11 #
jpayne@69 12 # 'make dist' creates a gzipped tarfile of the MUMmer directories
jpayne@69 13 #
jpayne@69 14 # 'make install' alias for 'make all' (for compatibility)
jpayne@69 15 #
jpayne@69 16 # 'make kurtz' builds Stefan's mummer program in the base directory
jpayne@69 17 #
jpayne@69 18 # 'make scripts' builds the MUMmer scripts in the base directory
jpayne@69 19 #
jpayne@69 20 # 'make tigr' builds TIGR's code in the base directory
jpayne@69 21 #
jpayne@69 22 # 'make uninstall' alias for 'make clean' (for compatibility)
jpayne@69 23 #
jpayne@69 24 #-------------------------------------------------------------------------------
jpayne@69 25 SHELL = /bin/sh
jpayne@69 26 VERSION := 3.23
jpayne@69 27
jpayne@69 28
jpayne@69 29 TOP_DIR := $(CURDIR)
jpayne@69 30 BIN_DIR := $(TOP_DIR)
jpayne@69 31 AUX_BIN_DIR := $(TOP_DIR)/aux_bin
jpayne@69 32
jpayne@69 33 DOC_DIR := $(TOP_DIR)/docs
jpayne@69 34 SCRIPT_DIR := $(TOP_DIR)/scripts
jpayne@69 35 TIGR_SRC_DIR := $(TOP_DIR)/src/tigr
jpayne@69 36 KURTZ_SRC_DIR := $(TOP_DIR)/src/kurtz
jpayne@69 37
jpayne@69 38 CC := $(filter /%,$(shell /bin/sh -c 'type gcc'))
jpayne@69 39 CXX := $(filter /%,$(shell /bin/sh -c 'type g++'))
jpayne@69 40 SED := $(filter /%,$(shell /bin/sh -c 'type sed'))
jpayne@69 41 CSH := $(filter /%,$(shell /bin/sh -c 'type csh'))
jpayne@69 42 PERL := $(filter /%,$(shell /bin/sh -c 'type perl'))
jpayne@69 43 AR := $(filter /%,$(shell /bin/sh -c 'type ar'))
jpayne@69 44
jpayne@69 45 CXXFLAGS = -O3
jpayne@69 46 CFLAGS = -O3
jpayne@69 47 LDFLAGS =
jpayne@69 48
jpayne@69 49 FLATS = ACKNOWLEDGEMENTS COPYRIGHT INSTALL LICENSE Makefile README ChangeLog
jpayne@69 50
jpayne@69 51
jpayne@69 52
jpayne@69 53 #-- EXPORT THESE VARIABLES TO OTHER MAKEFILES
jpayne@69 54 export BIN_DIR AUX_BIN_DIR CXX CC CFLAGS CXXFLAGS LDFLAGS
jpayne@69 55
jpayne@69 56
jpayne@69 57
jpayne@69 58
jpayne@69 59 #-- PHONY rules --#
jpayne@69 60 .PHONY: all check clean dist scripts uninstall
jpayne@69 61
jpayne@69 62
jpayne@69 63 all: kurtz tigr scripts
jpayne@69 64
jpayne@69 65
jpayne@69 66 check:
jpayne@69 67 ifndef TOP_DIR
jpayne@69 68 @echo "ERROR: could not find working directory"
jpayne@69 69 endif
jpayne@69 70 ifndef CC
jpayne@69 71 @echo "ERROR: 'gcc' GNU C compiler not found"
jpayne@69 72 endif
jpayne@69 73 ifndef CXX
jpayne@69 74 @echo "ERROR: 'g++' GNU C++ compiler not found"
jpayne@69 75 endif
jpayne@69 76 ifndef SED
jpayne@69 77 @echo "ERROR: 'sed' StreamEDitor not found"
jpayne@69 78 endif
jpayne@69 79 ifndef CSH
jpayne@69 80 @echo "ERROR: 'csh' C-shell not found"
jpayne@69 81 endif
jpayne@69 82 ifndef PERL
jpayne@69 83 @echo "ERROR: 'perl' PERL not found"
jpayne@69 84 endif
jpayne@69 85 ifndef AR
jpayne@69 86 @echo "ERROR: 'ar' GNU archiver not found"
jpayne@69 87 endif
jpayne@69 88 @echo "check complete"
jpayne@69 89
jpayne@69 90
jpayne@69 91 clean:
jpayne@69 92 rm -f *~ core*
jpayne@69 93 cd $(KURTZ_SRC_DIR); $(MAKE) clean
jpayne@69 94 cd $(TIGR_SRC_DIR); $(MAKE) clean
jpayne@69 95 cd $(SCRIPT_DIR); $(MAKE) clean
jpayne@69 96 cd $(DOC_DIR); $(MAKE) clean
jpayne@69 97
jpayne@69 98
jpayne@69 99 dist: DISTDIR = MUMmer$(VERSION)
jpayne@69 100 dist:
jpayne@69 101 mkdir $(DISTDIR)
jpayne@69 102 cp -r aux_bin $(DISTDIR)
jpayne@69 103 cp -r docs $(DISTDIR)
jpayne@69 104 cp -r scripts $(DISTDIR)
jpayne@69 105 cp -r src $(DISTDIR)
jpayne@69 106 cp $(FLATS) $(DISTDIR)
jpayne@69 107 rm -rf `find $(DISTDIR) -name CVS`
jpayne@69 108 tar -cvf $(DISTDIR).tar $(DISTDIR)
jpayne@69 109 gzip $(DISTDIR).tar
jpayne@69 110 rm -rf $(DISTDIR)
jpayne@69 111
jpayne@69 112
jpayne@69 113 install: all
jpayne@69 114
jpayne@69 115
jpayne@69 116 kurtz:
jpayne@69 117 cd $(KURTZ_SRC_DIR); $(MAKE) mummer
jpayne@69 118
jpayne@69 119
jpayne@69 120 scripts:
jpayne@69 121 cd $(SCRIPT_DIR); $(MAKE) all
jpayne@69 122
jpayne@69 123
jpayne@69 124 tigr:
jpayne@69 125 cd $(TIGR_SRC_DIR); $(MAKE) all
jpayne@69 126
jpayne@69 127
jpayne@69 128 uninstall: clean
jpayne@69 129
jpayne@69 130
jpayne@69 131 #-- END OF MAKEFILE --#