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comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/src/kurtz/README @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
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| date | Tue, 18 Mar 2025 17:55:14 -0400 |
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| 67:0e9998148a16 | 69:33d812a61356 |
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| 1 /* | |
| 2 Copyright (c) 2003 by Stefan Kurtz and The Institute for | |
| 3 Genomic Research. This is OSI Certified Open Source Software. | |
| 4 Please see the file LICENSE for licensing information and | |
| 5 the file ACKNOWLEDGEMENTS for names of contributors to the | |
| 6 code base. | |
| 7 */ | |
| 8 | |
| 9 This directory contains the complete sources for 'mummer' (maxmat3.x) in three | |
| 10 subdirectories: | |
| 11 | |
| 12 - libbasedir contains some basic functions which are used for other programs | |
| 13 as well. To simplify reusing them I have put them in an extra library. | |
| 14 | |
| 15 - streesrc contains the source for the suffix tree library. | |
| 16 | |
| 17 - mm3src contains the application specific source code for the | |
| 18 program maxmat3.x | |
| 19 | |
| 20 You can compile it using make. Since we use include statements | |
| 21 in Makefile's your make has to support this feature. This e.g. | |
| 22 holds for gnu make. | |
| 23 | |
| 24 The code was tested for the following platforms: | |
| 25 | |
| 26 - linux on Intel PIII | |
| 27 - solaris2 on SUN-Sparc | |
| 28 - tru64 on Compaq-Alpha | |
| 29 - hp-machine with HP-UX | |
| 30 | |
| 31 | |
| 32 #-- FOR DEVELOPERS --# | |
| 33 If you would prefer to build the suffix tree source from this directory rather | |
| 34 than the top level MUMmer directory, please uncomment the lines that begin with | |
| 35 '##' in the Makefiles for each subdirectory to assure they use the appropriate | |
| 36 values for compilation. |