Mercurial > repos > rliterman > csp2
annotate CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/src/kurtz/README @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 17:55:14 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| jpayne@69 | 1 /* |
| jpayne@69 | 2 Copyright (c) 2003 by Stefan Kurtz and The Institute for |
| jpayne@69 | 3 Genomic Research. This is OSI Certified Open Source Software. |
| jpayne@69 | 4 Please see the file LICENSE for licensing information and |
| jpayne@69 | 5 the file ACKNOWLEDGEMENTS for names of contributors to the |
| jpayne@69 | 6 code base. |
| jpayne@69 | 7 */ |
| jpayne@69 | 8 |
| jpayne@69 | 9 This directory contains the complete sources for 'mummer' (maxmat3.x) in three |
| jpayne@69 | 10 subdirectories: |
| jpayne@69 | 11 |
| jpayne@69 | 12 - libbasedir contains some basic functions which are used for other programs |
| jpayne@69 | 13 as well. To simplify reusing them I have put them in an extra library. |
| jpayne@69 | 14 |
| jpayne@69 | 15 - streesrc contains the source for the suffix tree library. |
| jpayne@69 | 16 |
| jpayne@69 | 17 - mm3src contains the application specific source code for the |
| jpayne@69 | 18 program maxmat3.x |
| jpayne@69 | 19 |
| jpayne@69 | 20 You can compile it using make. Since we use include statements |
| jpayne@69 | 21 in Makefile's your make has to support this feature. This e.g. |
| jpayne@69 | 22 holds for gnu make. |
| jpayne@69 | 23 |
| jpayne@69 | 24 The code was tested for the following platforms: |
| jpayne@69 | 25 |
| jpayne@69 | 26 - linux on Intel PIII |
| jpayne@69 | 27 - solaris2 on SUN-Sparc |
| jpayne@69 | 28 - tru64 on Compaq-Alpha |
| jpayne@69 | 29 - hp-machine with HP-UX |
| jpayne@69 | 30 |
| jpayne@69 | 31 |
| jpayne@69 | 32 #-- FOR DEVELOPERS --# |
| jpayne@69 | 33 If you would prefer to build the suffix tree source from this directory rather |
| jpayne@69 | 34 than the top level MUMmer directory, please uncomment the lines that begin with |
| jpayne@69 | 35 '##' in the Makefiles for each subdirectory to assure they use the appropriate |
| jpayne@69 | 36 values for compilation. |