| Previous changeset 18:97abaa8b8384 (2018-01-31) Next changeset 20:baf9ccfae6f0 (2018-01-31) |
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Commit message:
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty |
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modified:
6_merge_vcfs.xml 7_smp_matrix.xml |
| 6_merge_vcfs.xml |
| diff -r 97abaa8b8384 -r 4bb7e4a360bc 6_merge_vcfs.xml |
| 6_merge_vcfs.xml |
| --- a/6_merge_vcfs.xml Wed Jan 31 12:33:00 2018 -0500 +++ b/6_merge_vcfs.xml Wed Jan 31 12:38:03 2018 -0500 @@ -1,7 +1,7 @@ <tool id="merge_vcfs" name="6. Merge VCFs" version="1.0.1" profile="16.10"> <description>into a multi-sample VCF with consensus SNPs</description> <requirements> - <!-- <requirement type="package" version="1.6">bcftools</requirement> --> + <requirement type="package" version="1.6">bcftools</requirement> <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="1.0.1">snp-pipeline</requirement> <requirement type="package">tabix</requirement> |
| 7_smp_matrix.xml |
| diff -r 97abaa8b8384 -r 4bb7e4a360bc 7_smp_matrix.xml |
| 7_smp_matrix.xml |
| --- a/7_smp_matrix.xml Wed Jan 31 12:33:00 2018 -0500 +++ b/7_smp_matrix.xml Wed Jan 31 12:38:03 2018 -0500 @@ -8,11 +8,6 @@ <requirement type="package" version="3.4">python3</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ - env && - which bcftools && - which bunzip && - which snp-pipeline && - which python && python $__tool_directory__/snp-wind.py ./ -p "consensus.fasta" #for $fa in sorted($cons, key=lambda f: f.element_identifier) -n $fa.element_identifier -f $fa |