| Previous changeset 19:4bb7e4a360bc (2018-01-31) Next changeset 21:46b274d082a9 (2018-01-31) |
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Commit message:
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty |
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modified:
6_merge_vcfs.xml |
| 6_merge_vcfs.xml |
| diff -r 4bb7e4a360bc -r baf9ccfae6f0 6_merge_vcfs.xml |
| 6_merge_vcfs.xml |
| --- a/6_merge_vcfs.xml Wed Jan 31 12:38:03 2018 -0500 +++ b/6_merge_vcfs.xml Wed Jan 31 12:45:53 2018 -0500 @@ -8,6 +8,12 @@ <requirement type="package" version="3.4">python3</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ + env && + which bcftools && + which bunzip && + which snp-pipeline && + which python && + ldconfig -p | grep "libbz2.so*" && python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf" #for $vcf in $vcfs -n $vcf.element_identifier -f $vcf |