Mercurial > repos > jpayne > refchooser
comparison test-data/test/resistance/UCLA_1626_resfinder/ResFinder_results_table.txt @ 0:91bc7378c1c5 draft
planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
| author | jpayne |
|---|---|
| date | Mon, 11 Aug 2025 15:37:26 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:91bc7378c1c5 |
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| 1 Aminoglycoside | |
| 2 No hit found | |
| 3 | |
| 4 Beta-lactam | |
| 5 Resistance gene Identity Alignment Length/Gene Length Coverage Position in reference Contig Position in contig Phenotype Accession no. | |
| 6 blaOXA-193 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam CP013032 | |
| 7 blaOXA-61 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid AY587956 | |
| 8 blaOXA-489 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam CP013733 | |
| 9 blaOXA-453 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061507 | |
| 10 blaOXA-452 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061505 | |
| 11 blaOXA-451 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061504 | |
| 12 blaOXA-450 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061502 | |
| 13 | |
| 14 Colistin | |
| 15 No hit found | |
| 16 | |
| 17 Fosfomycin | |
| 18 No hit found | |
| 19 | |
| 20 Fusidic Acid | |
| 21 No hit found | |
| 22 | |
| 23 MLS - Macrolide, Lincosamide and Streptogramin B | |
| 24 No hit found | |
| 25 | |
| 26 Misc | |
| 27 No hit found | |
| 28 | |
| 29 Nitroimidazole | |
| 30 No hit found | |
| 31 | |
| 32 Oxazolidinone | |
| 33 No hit found | |
| 34 | |
| 35 Phenicol | |
| 36 No hit found | |
| 37 | |
| 38 Fluoroquinolone | |
| 39 No hit found | |
| 40 | |
| 41 Rifampicin | |
| 42 No hit found | |
| 43 | |
| 44 Sulphonamide | |
| 45 No hit found | |
| 46 | |
| 47 Tetracycline | |
| 48 Resistance gene Identity Alignment Length/Gene Length Coverage Position in reference Contig Position in contig Phenotype Accession no. | |
| 49 tet(O) 100.00 1920/1920 100.0 1..1920 Contig_1_168.009_Circ [topology=circular] 27131..29050 Doxycycline, Tetracycline, Minocycline M18896 | |
| 50 | |
| 51 Trimethoprim | |
| 52 No hit found | |
| 53 | |
| 54 Glycopeptide | |
| 55 No hit found | |
| 56 | |
| 57 Pseudomonic Acid | |
| 58 No hit found | |
| 59 |