Mercurial > repos > jpayne > refchooser
diff test-data/test/resistance/UCLA_1626_resfinder/ResFinder_results_table.txt @ 0:91bc7378c1c5 draft
planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
| author | jpayne |
|---|---|
| date | Mon, 11 Aug 2025 15:37:26 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test/resistance/UCLA_1626_resfinder/ResFinder_results_table.txt Mon Aug 11 15:37:26 2025 +0000 @@ -0,0 +1,59 @@ +Aminoglycoside +No hit found + +Beta-lactam +Resistance gene Identity Alignment Length/Gene Length Coverage Position in reference Contig Position in contig Phenotype Accession no. +blaOXA-193 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam CP013032 +blaOXA-61 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid AY587956 +blaOXA-489 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam CP013733 +blaOXA-453 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061507 +blaOXA-452 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061505 +blaOXA-451 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061504 +blaOXA-450 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061502 + +Colistin +No hit found + +Fosfomycin +No hit found + +Fusidic Acid +No hit found + +MLS - Macrolide, Lincosamide and Streptogramin B +No hit found + +Misc +No hit found + +Nitroimidazole +No hit found + +Oxazolidinone +No hit found + +Phenicol +No hit found + +Fluoroquinolone +No hit found + +Rifampicin +No hit found + +Sulphonamide +No hit found + +Tetracycline +Resistance gene Identity Alignment Length/Gene Length Coverage Position in reference Contig Position in contig Phenotype Accession no. +tet(O) 100.00 1920/1920 100.0 1..1920 Contig_1_168.009_Circ [topology=circular] 27131..29050 Doxycycline, Tetracycline, Minocycline M18896 + +Trimethoprim +No hit found + +Glycopeptide +No hit found + +Pseudomonic Acid +No hit found +