Mercurial > repos > jpayne > refchooser

annotate test-data/test/resistance/UCLA_1626_resfinder/ResFinder_results_table.txt @ 0:91bc7378c1c5 draft

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planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
author jpayne
date Mon, 11 Aug 2025 15:37:26 +0000
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1 Aminoglycoside
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2 No hit found
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3
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4 Beta-lactam
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5 Resistance gene Identity Alignment Length/Gene Length Coverage Position in reference Contig Position in contig Phenotype Accession no.
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6 blaOXA-193 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam CP013032
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7 blaOXA-61 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid AY587956
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8 blaOXA-489 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam CP013733
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9 blaOXA-453 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061507
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10 blaOXA-452 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061505
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11 blaOXA-451 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061504
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12 blaOXA-450 99.87 774/774 100.0 1..774 Contig_17_116.474 33449..34222 Unknown Beta-lactam KR061502
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13
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14 Colistin
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15 No hit found
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16
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17 Fosfomycin
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18 No hit found
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19
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20 Fusidic Acid
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21 No hit found
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22
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23 MLS - Macrolide, Lincosamide and Streptogramin B
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24 No hit found
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25
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26 Misc
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27 No hit found
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28
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29 Nitroimidazole
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30 No hit found
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31
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32 Oxazolidinone
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33 No hit found
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34
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35 Phenicol
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36 No hit found
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37
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38 Fluoroquinolone
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39 No hit found
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40
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41 Rifampicin
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42 No hit found
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43
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44 Sulphonamide
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45 No hit found
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46
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47 Tetracycline
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48 Resistance gene Identity Alignment Length/Gene Length Coverage Position in reference Contig Position in contig Phenotype Accession no.
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49 tet(O) 100.00 1920/1920 100.0 1..1920 Contig_1_168.009_Circ [topology=circular] 27131..29050 Doxycycline, Tetracycline, Minocycline M18896
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50
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51 Trimethoprim
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52 No hit found
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53
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54 Glycopeptide
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55 No hit found
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56
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57 Pseudomonic Acid
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58 No hit found
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59